Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01285

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpqqL and gadB are separated by 360 nucleotidesgadB and gadC are separated by 155 nucleotides OKFHMN_01280: pqqL - putative zinc protease PqqL, at 154,622 to 157,405 pqqL OKFHMN_01285: gadB - glutamate decarboxylase, at 157,766 to 159,166 gadB OKFHMN_01290: gadC - acid resistance gamma-aminobutyrate antiporter GadC, at 159,322 to 160,857 gadC Position (kb) 157 158 159 160Strain fitness (log2 ratio) -1 0 1 2at 156.769 kb on + strand, within pqqLat 156.862 kb on - strand, within pqqLat 158.748 kb on - strand, within gadBat 159.252 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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156,769 + pqqL OKFHMN_01280 0.77 -0.1
156,862 - pqqL OKFHMN_01280 0.80 -1.1
158,748 - gadB OKFHMN_01285 0.70 +0.5
159,252 + +1.9

Or see this region's nucleotide sequence