Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt roxA and OKFHMN_00640 are separated by 248 nucleotides OKFHMN_00640 and OKFHMN_00645 are separated by 610 nucleotides
OKFHMN_00635: roxA - [50S ribosomal protein L16]-arginine 3-hydroxylase, at 34,085 to 35,206
roxA
OKFHMN_00640: OKFHMN_00640 - integrase, at 35,455 to 36,684
_00640
OKFHMN_00645: OKFHMN_00645 - host cell division inhibitor Icd-like protein, at 37,295 to 38,239
_00645
Position (kb) 35
36
37 Strain fitness (log2 ratio) -2
-1
0
1
2 at 34.667 kb on - strand, within roxA at 35.209 kb on + strand at 35.227 kb on + strand at 35.242 kb on - strand at 35.254 kb on + strand at 35.425 kb on + strand at 35.582 kb on + strand, within OKFHMN_00640 at 35.591 kb on - strand, within OKFHMN_00640 at 35.743 kb on - strand, within OKFHMN_00640 at 35.859 kb on + strand, within OKFHMN_00640 at 35.870 kb on + strand, within OKFHMN_00640 at 36.160 kb on + strand, within OKFHMN_00640 at 36.218 kb on + strand, within OKFHMN_00640 at 36.998 kb on - strand at 37.047 kb on + strand at 37.288 kb on + strand at 37.441 kb on - strand, within OKFHMN_00645 at 37.447 kb on - strand, within OKFHMN_00645 at 37.447 kb on - strand, within OKFHMN_00645 at 37.449 kb on - strand, within OKFHMN_00645 at 37.463 kb on - strand, within OKFHMN_00645 at 37.463 kb on - strand, within OKFHMN_00645 at 37.505 kb on + strand, within OKFHMN_00645 at 37.532 kb on - strand, within OKFHMN_00645
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 34,667 - roxA OKFHMN_00635 0.52 +0.4 35,209 + +0.7 35,227 + +0.9 35,242 - -1.5 35,254 + -0.5 35,425 + -0.1 35,582 + OKFHMN_00640 0.10 +1.1 35,591 - OKFHMN_00640 0.11 -1.4 35,743 - OKFHMN_00640 0.23 -0.1 35,859 + OKFHMN_00640 0.33 +1.0 35,870 + OKFHMN_00640 0.34 +0.8 36,160 + OKFHMN_00640 0.57 -2.7 36,218 + OKFHMN_00640 0.62 +1.6 36,998 - +0.8 37,047 + +1.5 37,288 + -0.3 37,441 - OKFHMN_00645 0.15 -0.8 37,447 - OKFHMN_00645 0.16 +0.7 37,447 - OKFHMN_00645 0.16 +1.8 37,449 - OKFHMN_00645 0.16 +0.5 37,463 - OKFHMN_00645 0.18 -0.9 37,463 - OKFHMN_00645 0.18 +0.2 37,505 + OKFHMN_00645 0.22 -2.5 37,532 - OKFHMN_00645 0.25 +2.6
Or see this region's nucleotide sequence