Strain Fitness in Escherichia coli ECRC100 around OKFHMN_00205

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntehxD and ehxB are separated by 3 nucleotidesehxB and ehxA are separated by 49 nucleotides OKFHMN_00200: ehxD - enterohemolysin T1SS ABC transporter subunit EhxD, at 39,955 to 41,394 ehxD OKFHMN_00205: ehxB - enterohemolysin T1SS ABC transporter permease/ATPase EhxB, at 41,398 to 43,518 ehxB OKFHMN_00210: ehxA - enterohemolysin EhxA, at 43,568 to 46,564 ehxA Position (kb) 41 42 43 44Strain fitness (log2 ratio) -1 0 1at 41.279 kb on + strandat 41.500 kb on + strandat 41.728 kb on - strand, within ehxBat 41.805 kb on + strand, within ehxBat 41.987 kb on - strand, within ehxBat 42.276 kb on + strand, within ehxBat 42.341 kb on - strand, within ehxBat 42.377 kb on - strand, within ehxBat 42.457 kb on - strand, within ehxBat 42.499 kb on + strand, within ehxBat 42.604 kb on - strand, within ehxBat 42.628 kb on + strand, within ehxBat 42.861 kb on + strand, within ehxBat 42.864 kb on + strand, within ehxBat 42.865 kb on - strand, within ehxBat 43.010 kb on - strand, within ehxBat 43.224 kb on - strand, within ehxBat 43.268 kb on + strand, within ehxBat 43.343 kb on + strandat 43.492 kb on - strandat 43.518 kb on + strandat 43.519 kb on - strandat 43.948 kb on + strand, within ehxAat 44.074 kb on + strand, within ehxAat 44.240 kb on - strand, within ehxAat 44.350 kb on + strand, within ehxA

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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41,279 + -0.0
41,500 + -1.4
41,728 - ehxB OKFHMN_00205 0.16 +1.4
41,805 + ehxB OKFHMN_00205 0.19 -1.1
41,987 - ehxB OKFHMN_00205 0.28 +0.8
42,276 + ehxB OKFHMN_00205 0.41 -0.1
42,341 - ehxB OKFHMN_00205 0.44 +0.1
42,377 - ehxB OKFHMN_00205 0.46 -0.2
42,457 - ehxB OKFHMN_00205 0.50 +0.9
42,499 + ehxB OKFHMN_00205 0.52 +0.0
42,604 - ehxB OKFHMN_00205 0.57 +1.1
42,628 + ehxB OKFHMN_00205 0.58 +0.3
42,861 + ehxB OKFHMN_00205 0.69 -1.0
42,864 + ehxB OKFHMN_00205 0.69 -1.6
42,865 - ehxB OKFHMN_00205 0.69 -0.8
43,010 - ehxB OKFHMN_00205 0.76 +0.7
43,224 - ehxB OKFHMN_00205 0.86 -0.1
43,268 + ehxB OKFHMN_00205 0.88 +0.2
43,343 + -0.1
43,492 - +1.0
43,518 + +1.0
43,519 - -0.7
43,948 + ehxA OKFHMN_00210 0.13 -1.7
44,074 + ehxA OKFHMN_00210 0.17 -1.6
44,240 - ehxA OKFHMN_00210 0.22 -0.4
44,350 + ehxA OKFHMN_00210 0.26 +0.0

Or see this region's nucleotide sequence