Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt repA and OKFHMN_00190 are separated by 75 nucleotides OKFHMN_00190 and xerD are separated by 89 nucleotides
OKFHMN_00185: repA - RepFIB replication protein A, at 36,858 to 37,835
repA
OKFHMN_00190: OKFHMN_00190 - hypothetical protein, at 37,911 to 38,030
_00190
OKFHMN_00195: xerD - recombinase, at 38,120 to 38,860
xerD
Position (kb) 38
39 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 37.144 kb on + strand, within repA at 37.144 kb on + strand, within repA at 37.144 kb on + strand, within repA at 37.197 kb on - strand, within repA at 37.197 kb on - strand, within repA at 37.338 kb on + strand, within repA at 37.338 kb on + strand, within repA at 37.339 kb on - strand, within repA at 37.341 kb on + strand, within repA at 37.341 kb on + strand, within repA at 37.341 kb on + strand, within repA at 37.342 kb on - strand, within repA at 37.342 kb on - strand, within repA at 37.398 kb on + strand, within repA at 37.431 kb on - strand, within repA at 37.431 kb on - strand, within repA at 37.476 kb on + strand, within repA at 37.476 kb on + strand, within repA at 37.476 kb on + strand, within repA at 37.477 kb on - strand, within repA at 37.477 kb on - strand, within repA at 37.477 kb on - strand, within repA at 37.486 kb on + strand, within repA at 37.487 kb on - strand, within repA at 37.840 kb on - strand at 37.847 kb on - strand at 37.882 kb on + strand at 37.882 kb on + strand at 37.883 kb on - strand at 37.883 kb on - strand at 37.888 kb on - strand at 37.922 kb on + strand at 37.950 kb on + strand, within OKFHMN_00190 at 37.950 kb on + strand, within OKFHMN_00190 at 37.951 kb on - strand, within OKFHMN_00190 at 37.951 kb on - strand, within OKFHMN_00190 at 37.978 kb on - strand, within OKFHMN_00190 at 37.993 kb on + strand, within OKFHMN_00190 at 38.024 kb on - strand at 38.036 kb on - strand at 38.073 kb on - strand at 38.097 kb on + strand at 38.098 kb on - strand at 38.098 kb on - strand at 38.098 kb on - strand at 38.100 kb on - strand at 38.101 kb on + strand at 38.101 kb on + strand at 38.102 kb on - strand at 38.102 kb on - strand at 38.114 kb on - strand at 38.140 kb on + strand at 38.141 kb on - strand at 38.225 kb on - strand, within xerD at 38.227 kb on - strand, within xerD at 38.227 kb on - strand, within xerD at 38.302 kb on + strand, within xerD at 38.302 kb on + strand, within xerD at 38.302 kb on + strand, within xerD at 38.303 kb on - strand, within xerD at 38.303 kb on - strand, within xerD at 38.303 kb on - strand, within xerD at 38.303 kb on - strand, within xerD at 38.303 kb on - strand, within xerD at 38.303 kb on - strand, within xerD at 38.311 kb on + strand, within xerD at 38.312 kb on - strand, within xerD at 38.312 kb on - strand, within xerD at 38.313 kb on + strand, within xerD at 38.313 kb on + strand, within xerD at 38.313 kb on + strand, within xerD at 38.313 kb on + strand, within xerD at 38.313 kb on + strand, within xerD at 38.313 kb on + strand, within xerD at 38.314 kb on - strand, within xerD at 38.314 kb on - strand, within xerD at 38.314 kb on - strand, within xerD at 38.314 kb on - strand, within xerD at 38.314 kb on - strand, within xerD at 38.314 kb on - strand, within xerD at 38.487 kb on + strand, within xerD at 38.488 kb on - strand, within xerD at 38.488 kb on - strand, within xerD at 38.488 kb on - strand, within xerD at 38.492 kb on + strand, within xerD at 38.492 kb on + strand, within xerD at 38.492 kb on + strand, within xerD at 38.492 kb on + strand, within xerD at 38.492 kb on + strand, within xerD at 38.492 kb on + strand, within xerD at 38.492 kb on + strand, within xerD at 38.492 kb on + strand, within xerD at 38.493 kb on - strand, within xerD at 38.493 kb on - strand, within xerD at 38.493 kb on - strand, within xerD at 38.493 kb on - strand, within xerD at 38.493 kb on - strand, within xerD at 38.493 kb on - strand, within xerD at 38.493 kb on - strand, within xerD at 38.494 kb on + strand, within xerD at 38.671 kb on + strand, within xerD at 38.671 kb on + strand, within xerD at 38.671 kb on + strand, within xerD at 38.671 kb on + strand, within xerD at 38.671 kb on + strand, within xerD at 38.672 kb on - strand, within xerD at 38.693 kb on - strand, within xerD at 38.695 kb on - strand, within xerD at 38.731 kb on - strand, within xerD at 38.940 kb on + strand at 39.094 kb on - strand at 39.181 kb on + strand at 39.182 kb on - strand at 39.217 kb on - strand at 39.260 kb on + strand at 39.579 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 37,144 + repA OKFHMN_00185 0.29 -0.4 37,144 + repA OKFHMN_00185 0.29 +3.7 37,144 + repA OKFHMN_00185 0.29 -2.9 37,197 - repA OKFHMN_00185 0.35 -0.2 37,197 - repA OKFHMN_00185 0.35 +4.1 37,338 + repA OKFHMN_00185 0.49 -1.6 37,338 + repA OKFHMN_00185 0.49 -0.9 37,339 - repA OKFHMN_00185 0.49 +0.4 37,341 + repA OKFHMN_00185 0.49 +1.1 37,341 + repA OKFHMN_00185 0.49 +1.0 37,341 + repA OKFHMN_00185 0.49 -0.4 37,342 - repA OKFHMN_00185 0.49 +0.2 37,342 - repA OKFHMN_00185 0.49 +0.6 37,398 + repA OKFHMN_00185 0.55 +0.7 37,431 - repA OKFHMN_00185 0.59 -1.3 37,431 - repA OKFHMN_00185 0.59 -0.4 37,476 + repA OKFHMN_00185 0.63 +2.6 37,476 + repA OKFHMN_00185 0.63 +2.7 37,476 + repA OKFHMN_00185 0.63 +0.3 37,477 - repA OKFHMN_00185 0.63 -0.4 37,477 - repA OKFHMN_00185 0.63 +1.5 37,477 - repA OKFHMN_00185 0.63 +0.6 37,486 + repA OKFHMN_00185 0.64 +0.7 37,487 - repA OKFHMN_00185 0.64 +0.7 37,840 - +0.3 37,847 - -3.0 37,882 + -0.0 37,882 + -0.5 37,883 - +0.2 37,883 - -4.0 37,888 - -2.1 37,922 + -1.0 37,950 + OKFHMN_00190 0.33 -0.1 37,950 + OKFHMN_00190 0.33 -2.3 37,951 - OKFHMN_00190 0.33 -2.1 37,951 - OKFHMN_00190 0.33 +0.6 37,978 - OKFHMN_00190 0.56 +0.5 37,993 + OKFHMN_00190 0.68 -0.5 38,024 - -2.3 38,036 - -1.3 38,073 - -0.1 38,097 + -0.4 38,098 - -1.9 38,098 - -3.1 38,098 - +0.7 38,100 - +1.0 38,101 + -0.5 38,101 + +0.7 38,102 - +1.5 38,102 - -1.9 38,114 - -0.4 38,140 + -0.6 38,141 - +0.3 38,225 - xerD OKFHMN_00195 0.14 +0.8 38,227 - xerD OKFHMN_00195 0.14 +0.3 38,227 - xerD OKFHMN_00195 0.14 +1.3 38,302 + xerD OKFHMN_00195 0.25 -0.3 38,302 + xerD OKFHMN_00195 0.25 -1.1 38,302 + xerD OKFHMN_00195 0.25 +0.9 38,303 - xerD OKFHMN_00195 0.25 -2.9 38,303 - xerD OKFHMN_00195 0.25 -0.4 38,303 - xerD OKFHMN_00195 0.25 -0.2 38,303 - xerD OKFHMN_00195 0.25 -0.4 38,303 - xerD OKFHMN_00195 0.25 -0.0 38,303 - xerD OKFHMN_00195 0.25 +0.3 38,311 + xerD OKFHMN_00195 0.26 +0.8 38,312 - xerD OKFHMN_00195 0.26 +1.9 38,312 - xerD OKFHMN_00195 0.26 +1.2 38,313 + xerD OKFHMN_00195 0.26 +2.3 38,313 + xerD OKFHMN_00195 0.26 -0.4 38,313 + xerD OKFHMN_00195 0.26 +0.0 38,313 + xerD OKFHMN_00195 0.26 -0.2 38,313 + xerD OKFHMN_00195 0.26 -2.7 38,313 + xerD OKFHMN_00195 0.26 +0.8 38,314 - xerD OKFHMN_00195 0.26 +0.2 38,314 - xerD OKFHMN_00195 0.26 +1.8 38,314 - xerD OKFHMN_00195 0.26 +0.1 38,314 - xerD OKFHMN_00195 0.26 -1.5 38,314 - xerD OKFHMN_00195 0.26 +0.4 38,314 - xerD OKFHMN_00195 0.26 -1.3 38,487 + xerD OKFHMN_00195 0.50 -0.7 38,488 - xerD OKFHMN_00195 0.50 -1.9 38,488 - xerD OKFHMN_00195 0.50 +0.4 38,488 - xerD OKFHMN_00195 0.50 +0.6 38,492 + xerD OKFHMN_00195 0.50 +0.4 38,492 + xerD OKFHMN_00195 0.50 +0.5 38,492 + xerD OKFHMN_00195 0.50 -2.6 38,492 + xerD OKFHMN_00195 0.50 +0.3 38,492 + xerD OKFHMN_00195 0.50 +0.6 38,492 + xerD OKFHMN_00195 0.50 -0.2 38,492 + xerD OKFHMN_00195 0.50 +1.3 38,492 + xerD OKFHMN_00195 0.50 -1.5 38,493 - xerD OKFHMN_00195 0.50 +1.7 38,493 - xerD OKFHMN_00195 0.50 +1.3 38,493 - xerD OKFHMN_00195 0.50 -0.6 38,493 - xerD OKFHMN_00195 0.50 +0.2 38,493 - xerD OKFHMN_00195 0.50 -0.3 38,493 - xerD OKFHMN_00195 0.50 +1.5 38,493 - xerD OKFHMN_00195 0.50 +0.1 38,494 + xerD OKFHMN_00195 0.50 -0.5 38,671 + xerD OKFHMN_00195 0.74 -1.3 38,671 + xerD OKFHMN_00195 0.74 -0.2 38,671 + xerD OKFHMN_00195 0.74 -1.1 38,671 + xerD OKFHMN_00195 0.74 +0.6 38,671 + xerD OKFHMN_00195 0.74 -0.0 38,672 - xerD OKFHMN_00195 0.74 -0.7 38,693 - xerD OKFHMN_00195 0.77 +0.4 38,695 - xerD OKFHMN_00195 0.78 -1.2 38,731 - xerD OKFHMN_00195 0.82 +0.7 38,940 + -0.0 39,094 - +0.4 39,181 + -1.0 39,182 - -0.5 39,217 - +1.0 39,260 + -0.3 39,579 + +0.7
Or see this region's nucleotide sequence