Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_00125 and sopA are separated by 627 nucleotides sopA and sopA overlap by 1 nucleotides
OKFHMN_00125: OKFHMN_00125 - DUF1281 domain-containing protein, at 26,795 to 27,721
_00125
OKFHMN_00130: sopA - plasmid-partitioning protein SopA, at 28,349 to 29,320
sopA
OKFHMN_00135: sopA - plasmid-partitioning protein SopA, at 29,320 to 30,486
sopA
Position (kb) 28
29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 27.501 kb on - strand, within OKFHMN_00125 at 27.601 kb on + strand, within OKFHMN_00125 at 27.601 kb on + strand, within OKFHMN_00125 at 27.658 kb on + strand at 27.693 kb on + strand at 27.693 kb on + strand at 27.693 kb on + strand at 27.997 kb on + strand at 27.997 kb on + strand at 27.997 kb on + strand at 27.998 kb on - strand at 27.998 kb on - strand at 27.998 kb on - strand at 27.998 kb on - strand at 28.080 kb on + strand at 28.080 kb on + strand at 28.095 kb on - strand at 28.110 kb on - strand at 28.268 kb on - strand at 28.268 kb on - strand at 28.280 kb on + strand at 28.280 kb on + strand at 28.280 kb on + strand at 28.281 kb on - strand at 28.281 kb on - strand at 28.281 kb on - strand at 28.313 kb on + strand at 28.313 kb on + strand at 28.314 kb on - strand at 28.323 kb on + strand at 28.323 kb on + strand at 28.330 kb on - strand at 28.334 kb on + strand at 28.397 kb on + strand at 28.454 kb on - strand, within sopA at 28.454 kb on - strand, within sopA at 28.454 kb on - strand, within sopA at 28.456 kb on - strand, within sopA at 28.497 kb on - strand, within sopA at 28.502 kb on - strand, within sopA at 28.539 kb on - strand, within sopA at 28.569 kb on - strand, within sopA at 28.620 kb on - strand, within sopA at 28.674 kb on - strand, within sopA at 28.980 kb on - strand, within sopA at 29.069 kb on - strand, within sopA at 29.093 kb on - strand, within sopA at 29.150 kb on - strand, within sopA at 29.183 kb on - strand, within sopA at 29.264 kb on - strand at 29.303 kb on - strand at 29.569 kb on - strand, within sopA at 29.569 kb on - strand, within sopA at 29.593 kb on - strand, within sopA at 29.734 kb on - strand, within sopA at 29.734 kb on - strand, within sopA at 29.784 kb on - strand, within sopA at 29.908 kb on - strand, within sopA at 29.946 kb on - strand, within sopA at 30.029 kb on + strand, within sopA at 30.080 kb on - strand, within sopA at 30.293 kb on - strand, within sopA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 27,501 - OKFHMN_00125 0.76 +1.0 27,601 + OKFHMN_00125 0.87 -1.9 27,601 + OKFHMN_00125 0.87 -0.8 27,658 + +0.6 27,693 + -0.1 27,693 + +0.1 27,693 + -0.2 27,997 + +0.2 27,997 + -0.1 27,997 + +0.5 27,998 - +0.3 27,998 - -1.1 27,998 - +0.5 27,998 - +1.3 28,080 + +1.3 28,080 + +0.1 28,095 - +0.1 28,110 - +0.7 28,268 - -0.3 28,268 - +1.2 28,280 + +0.5 28,280 + -0.3 28,280 + +1.1 28,281 - +0.5 28,281 - -1.1 28,281 - -2.8 28,313 + +1.2 28,313 + +0.6 28,314 - +0.4 28,323 + +0.2 28,323 + +0.2 28,330 - +0.2 28,334 + +0.1 28,397 + -1.0 28,454 - sopA OKFHMN_00130 0.11 -2.1 28,454 - sopA OKFHMN_00130 0.11 -0.5 28,454 - sopA OKFHMN_00130 0.11 -1.8 28,456 - sopA OKFHMN_00130 0.11 -0.9 28,497 - sopA OKFHMN_00130 0.15 -0.9 28,502 - sopA OKFHMN_00130 0.16 -0.5 28,539 - sopA OKFHMN_00130 0.20 -0.6 28,569 - sopA OKFHMN_00130 0.23 -1.9 28,620 - sopA OKFHMN_00130 0.28 -0.3 28,674 - sopA OKFHMN_00130 0.33 -2.4 28,980 - sopA OKFHMN_00130 0.65 +0.1 29,069 - sopA OKFHMN_00130 0.74 -2.2 29,093 - sopA OKFHMN_00130 0.77 -0.4 29,150 - sopA OKFHMN_00130 0.82 -0.3 29,183 - sopA OKFHMN_00130 0.86 -0.7 29,264 - -0.9 29,303 - -0.9 29,569 - sopA OKFHMN_00135 0.21 -1.7 29,569 - sopA OKFHMN_00135 0.21 -1.8 29,593 - sopA OKFHMN_00135 0.23 -1.7 29,734 - sopA OKFHMN_00135 0.35 -1.1 29,734 - sopA OKFHMN_00135 0.35 -1.4 29,784 - sopA OKFHMN_00135 0.40 -1.1 29,908 - sopA OKFHMN_00135 0.50 -0.5 29,946 - sopA OKFHMN_00135 0.54 -2.2 30,029 + sopA OKFHMN_00135 0.61 -1.0 30,080 - sopA OKFHMN_00135 0.65 -1.0 30,293 - sopA OKFHMN_00135 0.83 -1.6
Or see this region's nucleotide sequence