Strain Fitness in Erwinia amylovora T8 around OLJFJH_03725

Experiment: Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_03720 and OLJFJH_03725 are separated by 58 nucleotidesOLJFJH_03725 and OLJFJH_03730 are separated by 143 nucleotides OLJFJH_03720: OLJFJH_03720 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 720,147 to 721,469 _03720 OLJFJH_03725: OLJFJH_03725 - Trk system potassium transporter TrkA, at 721,528 to 722,904 _03725 OLJFJH_03730: OLJFJH_03730 - large-conductance mechanosensitive channel protein MscL, at 723,048 to 723,461 _03730 Position (kb) 721 722 723Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 720.541 kb on + strand, within OLJFJH_03720at 720.606 kb on + strand, within OLJFJH_03720at 720.606 kb on + strand, within OLJFJH_03720at 720.607 kb on - strand, within OLJFJH_03720at 720.607 kb on - strand, within OLJFJH_03720at 720.968 kb on + strand, within OLJFJH_03720at 720.968 kb on + strand, within OLJFJH_03720at 720.998 kb on - strand, within OLJFJH_03720at 721.062 kb on - strand, within OLJFJH_03720at 721.190 kb on - strand, within OLJFJH_03720at 721.246 kb on + strand, within OLJFJH_03720at 721.336 kb on + strand, within OLJFJH_03720at 721.336 kb on + strand, within OLJFJH_03720at 721.336 kb on + strand, within OLJFJH_03720at 721.337 kb on - strandat 721.444 kb on - strandat 721.446 kb on + strandat 721.447 kb on - strandat 721.603 kb on - strandat 721.764 kb on + strand, within OLJFJH_03725at 721.765 kb on - strand, within OLJFJH_03725at 721.765 kb on - strand, within OLJFJH_03725at 721.837 kb on + strand, within OLJFJH_03725at 721.837 kb on + strand, within OLJFJH_03725at 721.837 kb on + strand, within OLJFJH_03725at 721.837 kb on + strand, within OLJFJH_03725at 721.838 kb on - strand, within OLJFJH_03725at 721.838 kb on - strand, within OLJFJH_03725at 721.838 kb on - strand, within OLJFJH_03725at 721.841 kb on + strand, within OLJFJH_03725at 721.841 kb on + strand, within OLJFJH_03725at 721.841 kb on + strand, within OLJFJH_03725at 721.841 kb on + strand, within OLJFJH_03725at 721.841 kb on + strand, within OLJFJH_03725at 721.841 kb on + strand, within OLJFJH_03725at 721.841 kb on + strand, within OLJFJH_03725at 721.841 kb on + strand, within OLJFJH_03725at 721.842 kb on - strand, within OLJFJH_03725at 721.842 kb on - strand, within OLJFJH_03725at 721.842 kb on - strand, within OLJFJH_03725at 721.842 kb on - strand, within OLJFJH_03725at 721.842 kb on - strand, within OLJFJH_03725at 721.842 kb on - strand, within OLJFJH_03725at 721.842 kb on - strand, within OLJFJH_03725at 721.842 kb on - strand, within OLJFJH_03725at 721.842 kb on - strand, within OLJFJH_03725at 721.842 kb on - strand, within OLJFJH_03725at 721.860 kb on - strand, within OLJFJH_03725at 721.860 kb on - strand, within OLJFJH_03725at 721.860 kb on - strand, within OLJFJH_03725at 721.860 kb on - strand, within OLJFJH_03725at 721.864 kb on - strand, within OLJFJH_03725at 721.864 kb on - strand, within OLJFJH_03725at 721.893 kb on + strand, within OLJFJH_03725at 721.893 kb on + strand, within OLJFJH_03725at 721.893 kb on + strand, within OLJFJH_03725at 721.894 kb on - strand, within OLJFJH_03725at 721.894 kb on - strand, within OLJFJH_03725at 722.009 kb on - strand, within OLJFJH_03725at 722.058 kb on + strand, within OLJFJH_03725at 722.058 kb on + strand, within OLJFJH_03725at 722.059 kb on - strand, within OLJFJH_03725at 722.059 kb on - strand, within OLJFJH_03725at 722.059 kb on - strand, within OLJFJH_03725at 722.059 kb on - strand, within OLJFJH_03725at 722.059 kb on - strand, within OLJFJH_03725at 722.059 kb on - strand, within OLJFJH_03725at 722.067 kb on + strand, within OLJFJH_03725at 722.178 kb on + strand, within OLJFJH_03725at 722.221 kb on + strand, within OLJFJH_03725at 722.221 kb on + strand, within OLJFJH_03725at 722.222 kb on - strand, within OLJFJH_03725at 722.232 kb on + strand, within OLJFJH_03725at 722.233 kb on - strand, within OLJFJH_03725at 722.233 kb on - strand, within OLJFJH_03725at 722.291 kb on - strand, within OLJFJH_03725at 722.291 kb on - strand, within OLJFJH_03725at 722.291 kb on - strand, within OLJFJH_03725at 722.348 kb on + strand, within OLJFJH_03725at 722.356 kb on - strand, within OLJFJH_03725at 722.457 kb on + strand, within OLJFJH_03725at 722.458 kb on - strand, within OLJFJH_03725at 722.513 kb on + strand, within OLJFJH_03725at 722.530 kb on + strand, within OLJFJH_03725at 722.531 kb on - strand, within OLJFJH_03725at 722.731 kb on - strand, within OLJFJH_03725at 722.926 kb on + strandat 722.927 kb on - strandat 723.026 kb on - strandat 723.187 kb on + strand, within OLJFJH_03730at 723.229 kb on + strand, within OLJFJH_03730at 723.263 kb on + strand, within OLJFJH_03730at 723.270 kb on + strand, within OLJFJH_03730at 723.271 kb on - strand, within OLJFJH_03730at 723.271 kb on - strand, within OLJFJH_03730at 723.355 kb on - strand, within OLJFJH_03730at 723.355 kb on - strand, within OLJFJH_03730at 723.356 kb on + strand, within OLJFJH_03730at 723.357 kb on - strand, within OLJFJH_03730at 723.489 kb on + strandat 723.490 kb on - strandat 723.497 kb on + strandat 723.554 kb on + strandat 723.622 kb on + strandat 723.792 kb on + strandat 723.794 kb on + strandat 723.798 kb on - strandat 723.801 kb on - strandat 723.852 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-3
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720,541 + OLJFJH_03720 0.30 -0.3
720,606 + OLJFJH_03720 0.35 -0.7
720,606 + OLJFJH_03720 0.35 -1.0
720,607 - OLJFJH_03720 0.35 -0.4
720,607 - OLJFJH_03720 0.35 -0.8
720,968 + OLJFJH_03720 0.62 +0.9
720,968 + OLJFJH_03720 0.62 +0.5
720,998 - OLJFJH_03720 0.64 -0.7
721,062 - OLJFJH_03720 0.69 -1.1
721,190 - OLJFJH_03720 0.79 -1.5
721,246 + OLJFJH_03720 0.83 -1.3
721,336 + OLJFJH_03720 0.90 +0.0
721,336 + OLJFJH_03720 0.90 -1.0
721,336 + OLJFJH_03720 0.90 -0.3
721,337 - -1.5
721,444 - -1.4
721,446 + -0.3
721,447 - -1.2
721,603 - -0.9
721,764 + OLJFJH_03725 0.17 -2.4
721,765 - OLJFJH_03725 0.17 -2.5
721,765 - OLJFJH_03725 0.17 -1.3
721,837 + OLJFJH_03725 0.22 -0.5
721,837 + OLJFJH_03725 0.22 -1.5
721,837 + OLJFJH_03725 0.22 -2.0
721,837 + OLJFJH_03725 0.22 -1.5
721,838 - OLJFJH_03725 0.23 -1.0
721,838 - OLJFJH_03725 0.23 -1.4
721,838 - OLJFJH_03725 0.23 -2.5
721,841 + OLJFJH_03725 0.23 -0.3
721,841 + OLJFJH_03725 0.23 -1.1
721,841 + OLJFJH_03725 0.23 -1.7
721,841 + OLJFJH_03725 0.23 +1.1
721,841 + OLJFJH_03725 0.23 +0.5
721,841 + OLJFJH_03725 0.23 -1.1
721,841 + OLJFJH_03725 0.23 -0.9
721,841 + OLJFJH_03725 0.23 +0.1
721,842 - OLJFJH_03725 0.23 -0.9
721,842 - OLJFJH_03725 0.23 -0.8
721,842 - OLJFJH_03725 0.23 -1.8
721,842 - OLJFJH_03725 0.23 -2.3
721,842 - OLJFJH_03725 0.23 +0.8
721,842 - OLJFJH_03725 0.23 -0.5
721,842 - OLJFJH_03725 0.23 -1.0
721,842 - OLJFJH_03725 0.23 -2.1
721,842 - OLJFJH_03725 0.23 -0.6
721,842 - OLJFJH_03725 0.23 -0.4
721,860 - OLJFJH_03725 0.24 -2.1
721,860 - OLJFJH_03725 0.24 -2.2
721,860 - OLJFJH_03725 0.24 -2.8
721,860 - OLJFJH_03725 0.24 +0.0
721,864 - OLJFJH_03725 0.24 -1.6
721,864 - OLJFJH_03725 0.24 -0.6
721,893 + OLJFJH_03725 0.27 -0.8
721,893 + OLJFJH_03725 0.27 -1.0
721,893 + OLJFJH_03725 0.27 -1.1
721,894 - OLJFJH_03725 0.27 +0.2
721,894 - OLJFJH_03725 0.27 -0.6
722,009 - OLJFJH_03725 0.35 -0.4
722,058 + OLJFJH_03725 0.38 +0.1
722,058 + OLJFJH_03725 0.38 -1.5
722,059 - OLJFJH_03725 0.39 -0.2
722,059 - OLJFJH_03725 0.39 -1.3
722,059 - OLJFJH_03725 0.39 -2.1
722,059 - OLJFJH_03725 0.39 -0.7
722,059 - OLJFJH_03725 0.39 -1.3
722,059 - OLJFJH_03725 0.39 -1.1
722,067 + OLJFJH_03725 0.39 -1.8
722,178 + OLJFJH_03725 0.47 -1.4
722,221 + OLJFJH_03725 0.50 +0.3
722,221 + OLJFJH_03725 0.50 -0.3
722,222 - OLJFJH_03725 0.50 -1.2
722,232 + OLJFJH_03725 0.51 -1.1
722,233 - OLJFJH_03725 0.51 -1.0
722,233 - OLJFJH_03725 0.51 -2.1
722,291 - OLJFJH_03725 0.55 -0.8
722,291 - OLJFJH_03725 0.55 -1.1
722,291 - OLJFJH_03725 0.55 -1.3
722,348 + OLJFJH_03725 0.60 -0.6
722,356 - OLJFJH_03725 0.60 -1.4
722,457 + OLJFJH_03725 0.67 -1.0
722,458 - OLJFJH_03725 0.68 -1.6
722,513 + OLJFJH_03725 0.72 -1.1
722,530 + OLJFJH_03725 0.73 +0.5
722,531 - OLJFJH_03725 0.73 -0.8
722,731 - OLJFJH_03725 0.87 -0.5
722,926 + -1.0
722,927 - +0.2
723,026 - -0.3
723,187 + OLJFJH_03730 0.34 +0.8
723,229 + OLJFJH_03730 0.44 -0.2
723,263 + OLJFJH_03730 0.52 -1.3
723,270 + OLJFJH_03730 0.54 -0.1
723,271 - OLJFJH_03730 0.54 +0.1
723,271 - OLJFJH_03730 0.54 -1.4
723,355 - OLJFJH_03730 0.74 -2.4
723,355 - OLJFJH_03730 0.74 +0.6
723,356 + OLJFJH_03730 0.74 +0.1
723,357 - OLJFJH_03730 0.75 -0.9
723,489 + +0.2
723,490 - -0.2
723,497 + +0.8
723,554 + -0.1
723,622 + +2.0
723,792 + +0.1
723,794 + -1.1
723,798 - -0.2
723,801 - -0.5
723,852 - -0.7

Or see this region's nucleotide sequence