Experiment: Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_03560 and OLJFJH_03565 are separated by 474 nucleotides OLJFJH_03565 and OLJFJH_03570 are separated by 81 nucleotides OLJFJH_03570 and OLJFJH_03575 are separated by 213 nucleotides
OLJFJH_03560: OLJFJH_03560 - conjugal transfer protein TraF, at 686,353 to 687,585
_03560
OLJFJH_03565: OLJFJH_03565 - zinc uptake transcriptional repressor Zur, at 688,060 to 688,569
_03565
OLJFJH_03570: OLJFJH_03570 - CsbD domain-containing protein, at 688,651 to 688,860
_03570
OLJFJH_03575: OLJFJH_03575 - MATE family efflux transporter DinF, at 689,074 to 690,396
_03575
Position (kb) 688
689 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 687.076 kb on - strand, within OLJFJH_03560 at 687.108 kb on + strand, within OLJFJH_03560 at 687.108 kb on + strand, within OLJFJH_03560 at 687.108 kb on + strand, within OLJFJH_03560 at 687.282 kb on - strand, within OLJFJH_03560 at 687.366 kb on + strand, within OLJFJH_03560 at 687.366 kb on + strand, within OLJFJH_03560 at 687.367 kb on - strand, within OLJFJH_03560 at 687.434 kb on + strand, within OLJFJH_03560 at 687.434 kb on + strand, within OLJFJH_03560 at 687.489 kb on - strand at 687.489 kb on - strand at 687.662 kb on + strand at 687.663 kb on - strand at 687.718 kb on - strand at 687.739 kb on + strand at 687.739 kb on + strand at 687.775 kb on - strand at 687.903 kb on - strand at 687.939 kb on - strand at 688.055 kb on + strand at 688.056 kb on - strand at 688.203 kb on - strand, within OLJFJH_03565 at 688.278 kb on + strand, within OLJFJH_03565 at 688.302 kb on + strand, within OLJFJH_03565 at 688.306 kb on + strand, within OLJFJH_03565 at 688.306 kb on + strand, within OLJFJH_03565 at 688.306 kb on + strand, within OLJFJH_03565 at 688.307 kb on - strand, within OLJFJH_03565 at 688.307 kb on - strand, within OLJFJH_03565 at 688.307 kb on - strand, within OLJFJH_03565 at 688.341 kb on + strand, within OLJFJH_03565 at 688.341 kb on + strand, within OLJFJH_03565 at 688.342 kb on - strand, within OLJFJH_03565 at 688.358 kb on + strand, within OLJFJH_03565 at 688.410 kb on + strand, within OLJFJH_03565 at 688.411 kb on - strand, within OLJFJH_03565 at 688.411 kb on - strand, within OLJFJH_03565 at 688.412 kb on + strand, within OLJFJH_03565 at 688.412 kb on + strand, within OLJFJH_03565 at 688.412 kb on + strand, within OLJFJH_03565 at 688.412 kb on + strand, within OLJFJH_03565 at 688.499 kb on + strand, within OLJFJH_03565 at 688.500 kb on - strand, within OLJFJH_03565 at 688.500 kb on - strand, within OLJFJH_03565 at 688.500 kb on - strand, within OLJFJH_03565 at 688.500 kb on - strand, within OLJFJH_03565 at 688.500 kb on - strand, within OLJFJH_03565 at 688.500 kb on - strand, within OLJFJH_03565 at 688.500 kb on - strand, within OLJFJH_03565 at 688.510 kb on - strand, within OLJFJH_03565 at 688.652 kb on + strand at 688.810 kb on - strand, within OLJFJH_03570 at 688.816 kb on - strand, within OLJFJH_03570 at 688.860 kb on + strand at 688.864 kb on - strand at 688.864 kb on - strand at 688.864 kb on - strand at 688.864 kb on - strand at 688.864 kb on - strand at 688.864 kb on - strand at 688.875 kb on - strand at 688.915 kb on + strand at 688.915 kb on + strand at 688.915 kb on + strand at 688.929 kb on + strand at 688.956 kb on + strand at 688.962 kb on + strand at 688.963 kb on - strand at 689.066 kb on - strand at 689.116 kb on + strand at 689.148 kb on + strand at 689.238 kb on + strand, within OLJFJH_03575 at 689.294 kb on + strand, within OLJFJH_03575 at 689.468 kb on - strand, within OLJFJH_03575 at 689.565 kb on + strand, within OLJFJH_03575
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-3 remove 687,076 - OLJFJH_03560 0.59 -0.8 687,108 + OLJFJH_03560 0.61 -0.7 687,108 + OLJFJH_03560 0.61 -0.4 687,108 + OLJFJH_03560 0.61 -0.1 687,282 - OLJFJH_03560 0.75 +0.2 687,366 + OLJFJH_03560 0.82 -0.6 687,366 + OLJFJH_03560 0.82 -0.0 687,367 - OLJFJH_03560 0.82 -0.2 687,434 + OLJFJH_03560 0.88 -0.7 687,434 + OLJFJH_03560 0.88 +1.9 687,489 - -0.1 687,489 - -1.8 687,662 + -0.2 687,663 - -0.7 687,718 - +0.7 687,739 + +0.0 687,739 + +0.1 687,775 - +0.2 687,903 - -1.0 687,939 - -0.1 688,055 + -1.0 688,056 - -3.3 688,203 - OLJFJH_03565 0.28 -0.9 688,278 + OLJFJH_03565 0.43 -2.5 688,302 + OLJFJH_03565 0.47 -2.1 688,306 + OLJFJH_03565 0.48 -0.2 688,306 + OLJFJH_03565 0.48 -1.2 688,306 + OLJFJH_03565 0.48 -0.9 688,307 - OLJFJH_03565 0.48 -0.9 688,307 - OLJFJH_03565 0.48 -1.5 688,307 - OLJFJH_03565 0.48 -1.4 688,341 + OLJFJH_03565 0.55 -0.6 688,341 + OLJFJH_03565 0.55 -0.1 688,342 - OLJFJH_03565 0.55 -1.0 688,358 + OLJFJH_03565 0.58 -1.7 688,410 + OLJFJH_03565 0.69 -1.5 688,411 - OLJFJH_03565 0.69 -1.3 688,411 - OLJFJH_03565 0.69 -0.6 688,412 + OLJFJH_03565 0.69 -0.8 688,412 + OLJFJH_03565 0.69 -0.9 688,412 + OLJFJH_03565 0.69 -0.6 688,412 + OLJFJH_03565 0.69 -0.6 688,499 + OLJFJH_03565 0.86 -0.9 688,500 - OLJFJH_03565 0.86 +0.0 688,500 - OLJFJH_03565 0.86 +1.5 688,500 - OLJFJH_03565 0.86 -2.2 688,500 - OLJFJH_03565 0.86 -0.1 688,500 - OLJFJH_03565 0.86 +0.0 688,500 - OLJFJH_03565 0.86 -2.4 688,500 - OLJFJH_03565 0.86 -1.2 688,510 - OLJFJH_03565 0.88 -0.1 688,652 + +0.7 688,810 - OLJFJH_03570 0.76 +0.7 688,816 - OLJFJH_03570 0.79 -0.0 688,860 + +2.4 688,864 - -0.5 688,864 - -0.6 688,864 - +0.1 688,864 - -0.1 688,864 - +0.0 688,864 - +1.5 688,875 - -0.1 688,915 + +0.5 688,915 + -0.1 688,915 + -0.8 688,929 + -0.2 688,956 + -0.9 688,962 + +0.2 688,963 - +2.0 689,066 - -1.5 689,116 + -0.8 689,148 + -1.0 689,238 + OLJFJH_03575 0.12 +0.4 689,294 + OLJFJH_03575 0.17 -0.8 689,468 - OLJFJH_03575 0.30 +0.0 689,565 + OLJFJH_03575 0.37 -0.2
Or see this region's nucleotide sequence