Strain Fitness in Erwinia amylovora T8 around OLJFJH_02500

Experiment: Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_02495 and OLJFJH_02500 are separated by 230 nucleotidesOLJFJH_02500 and OLJFJH_02505 are separated by 102 nucleotides OLJFJH_02495: OLJFJH_02495 - GTPase HflX, at 448,520 to 449,800 _02495 OLJFJH_02500: OLJFJH_02500 - RNA chaperone Hfq, at 450,031 to 450,342 _02500 OLJFJH_02505: OLJFJH_02505 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 450,445 to 451,350 _02505 Position (kb) 450 451Strain fitness (log2 ratio) -2 -1 0 1 2at 449.057 kb on + strand, within OLJFJH_02495at 449.058 kb on - strand, within OLJFJH_02495at 449.133 kb on + strand, within OLJFJH_02495at 449.134 kb on - strand, within OLJFJH_02495at 449.185 kb on + strand, within OLJFJH_02495at 449.185 kb on + strand, within OLJFJH_02495at 449.192 kb on + strand, within OLJFJH_02495at 449.224 kb on + strand, within OLJFJH_02495at 449.224 kb on + strand, within OLJFJH_02495at 449.225 kb on - strand, within OLJFJH_02495at 449.225 kb on - strand, within OLJFJH_02495at 449.225 kb on - strand, within OLJFJH_02495at 449.634 kb on + strand, within OLJFJH_02495at 449.634 kb on + strand, within OLJFJH_02495at 449.634 kb on + strand, within OLJFJH_02495at 449.635 kb on - strand, within OLJFJH_02495at 449.720 kb on + strandat 449.751 kb on + strandat 449.804 kb on + strandat 449.804 kb on + strandat 449.817 kb on + strandat 449.818 kb on - strandat 449.949 kb on - strandat 449.949 kb on - strandat 449.970 kb on - strandat 450.090 kb on + strand, within OLJFJH_02500at 450.091 kb on - strand, within OLJFJH_02500at 450.098 kb on + strand, within OLJFJH_02500at 450.099 kb on - strand, within OLJFJH_02500at 450.099 kb on - strand, within OLJFJH_02500at 450.099 kb on - strand, within OLJFJH_02500at 450.121 kb on - strand, within OLJFJH_02500at 450.124 kb on - strand, within OLJFJH_02500at 450.129 kb on + strand, within OLJFJH_02500at 450.178 kb on - strand, within OLJFJH_02500at 450.179 kb on + strand, within OLJFJH_02500at 450.180 kb on - strand, within OLJFJH_02500at 450.323 kb on - strandat 450.356 kb on + strandat 450.356 kb on + strandat 450.358 kb on + strandat 450.358 kb on + strandat 450.359 kb on - strandat 450.400 kb on - strandat 450.424 kb on + strandat 450.425 kb on - strandat 450.425 kb on - strandat 450.425 kb on - strandat 450.438 kb on + strandat 450.462 kb on + strandat 450.473 kb on - strandat 450.483 kb on + strandat 450.486 kb on - strandat 450.559 kb on - strand, within OLJFJH_02505at 450.559 kb on - strand, within OLJFJH_02505at 450.562 kb on + strand, within OLJFJH_02505at 450.563 kb on - strand, within OLJFJH_02505at 450.609 kb on + strand, within OLJFJH_02505at 450.918 kb on + strand, within OLJFJH_02505at 450.940 kb on + strand, within OLJFJH_02505at 450.940 kb on + strand, within OLJFJH_02505at 450.940 kb on + strand, within OLJFJH_02505at 450.940 kb on + strand, within OLJFJH_02505at 450.940 kb on + strand, within OLJFJH_02505at 450.941 kb on - strand, within OLJFJH_02505at 450.941 kb on - strand, within OLJFJH_02505at 450.950 kb on - strand, within OLJFJH_02505at 450.950 kb on - strand, within OLJFJH_02505at 450.961 kb on + strand, within OLJFJH_02505at 450.962 kb on - strand, within OLJFJH_02505at 450.998 kb on - strand, within OLJFJH_02505at 451.000 kb on - strand, within OLJFJH_02505at 451.061 kb on + strand, within OLJFJH_02505at 451.061 kb on + strand, within OLJFJH_02505at 451.062 kb on - strand, within OLJFJH_02505at 451.062 kb on - strand, within OLJFJH_02505at 451.062 kb on - strand, within OLJFJH_02505at 451.062 kb on - strand, within OLJFJH_02505at 451.062 kb on - strand, within OLJFJH_02505at 451.064 kb on + strand, within OLJFJH_02505at 451.065 kb on - strand, within OLJFJH_02505at 451.160 kb on + strand, within OLJFJH_02505

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-3
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449,057 + OLJFJH_02495 0.42 -0.8
449,058 - OLJFJH_02495 0.42 +0.4
449,133 + OLJFJH_02495 0.48 -1.0
449,134 - OLJFJH_02495 0.48 -2.1
449,185 + OLJFJH_02495 0.52 -0.5
449,185 + OLJFJH_02495 0.52 -0.8
449,192 + OLJFJH_02495 0.52 +0.2
449,224 + OLJFJH_02495 0.55 -1.6
449,224 + OLJFJH_02495 0.55 -1.8
449,225 - OLJFJH_02495 0.55 -0.4
449,225 - OLJFJH_02495 0.55 -0.9
449,225 - OLJFJH_02495 0.55 -1.0
449,634 + OLJFJH_02495 0.87 -0.6
449,634 + OLJFJH_02495 0.87 -1.0
449,634 + OLJFJH_02495 0.87 -2.2
449,635 - OLJFJH_02495 0.87 +0.3
449,720 + +1.1
449,751 + -1.8
449,804 + -0.3
449,804 + +0.4
449,817 + -0.4
449,818 - -0.1
449,949 - +0.4
449,949 - -0.2
449,970 - -0.8
450,090 + OLJFJH_02500 0.19 -0.1
450,091 - OLJFJH_02500 0.19 -1.3
450,098 + OLJFJH_02500 0.21 +0.8
450,099 - OLJFJH_02500 0.22 +0.5
450,099 - OLJFJH_02500 0.22 -0.4
450,099 - OLJFJH_02500 0.22 +0.1
450,121 - OLJFJH_02500 0.29 -1.1
450,124 - OLJFJH_02500 0.30 -0.9
450,129 + OLJFJH_02500 0.31 +1.0
450,178 - OLJFJH_02500 0.47 +0.5
450,179 + OLJFJH_02500 0.47 -1.1
450,180 - OLJFJH_02500 0.48 -2.0
450,323 - -0.9
450,356 + -0.0
450,356 + +0.3
450,358 + -1.3
450,358 + +1.2
450,359 - +1.9
450,400 - -0.1
450,424 + -0.2
450,425 - +0.2
450,425 - -1.1
450,425 - -0.5
450,438 + -0.6
450,462 + -0.4
450,473 - -0.3
450,483 + +0.1
450,486 - -1.7
450,559 - OLJFJH_02505 0.13 +0.4
450,559 - OLJFJH_02505 0.13 +1.0
450,562 + OLJFJH_02505 0.13 -0.7
450,563 - OLJFJH_02505 0.13 -1.0
450,609 + OLJFJH_02505 0.18 -1.5
450,918 + OLJFJH_02505 0.52 +1.4
450,940 + OLJFJH_02505 0.55 +0.7
450,940 + OLJFJH_02505 0.55 +1.1
450,940 + OLJFJH_02505 0.55 +0.5
450,940 + OLJFJH_02505 0.55 -0.2
450,940 + OLJFJH_02505 0.55 -1.0
450,941 - OLJFJH_02505 0.55 -0.6
450,941 - OLJFJH_02505 0.55 +1.7
450,950 - OLJFJH_02505 0.56 -1.3
450,950 - OLJFJH_02505 0.56 +1.4
450,961 + OLJFJH_02505 0.57 +1.2
450,962 - OLJFJH_02505 0.57 +1.3
450,998 - OLJFJH_02505 0.61 -0.7
451,000 - OLJFJH_02505 0.61 -0.1
451,061 + OLJFJH_02505 0.68 -1.1
451,061 + OLJFJH_02505 0.68 -0.6
451,062 - OLJFJH_02505 0.68 -0.4
451,062 - OLJFJH_02505 0.68 -0.3
451,062 - OLJFJH_02505 0.68 +0.7
451,062 - OLJFJH_02505 0.68 -0.6
451,062 - OLJFJH_02505 0.68 -1.0
451,064 + OLJFJH_02505 0.68 -0.3
451,065 - OLJFJH_02505 0.68 -0.8
451,160 + OLJFJH_02505 0.79 -1.3

Or see this region's nucleotide sequence