Strain Fitness in Erwinia amylovora T8 around OLJFJH_02495

Experiment: Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_02490 and OLJFJH_02495 are separated by 117 nucleotidesOLJFJH_02495 and OLJFJH_02500 are separated by 230 nucleotidesOLJFJH_02500 and OLJFJH_02505 are separated by 102 nucleotides OLJFJH_02490: OLJFJH_02490 - FtsH protease activity modulator HflK, at 447,149 to 448,402 _02490 OLJFJH_02495: OLJFJH_02495 - GTPase HflX, at 448,520 to 449,800 _02495 OLJFJH_02500: OLJFJH_02500 - RNA chaperone Hfq, at 450,031 to 450,342 _02500 OLJFJH_02505: OLJFJH_02505 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 450,445 to 451,350 _02505 Position (kb) 448 449 450Strain fitness (log2 ratio) -2 -1 0 1 2at 447.535 kb on - strand, within OLJFJH_02490at 447.600 kb on + strand, within OLJFJH_02490at 447.600 kb on + strand, within OLJFJH_02490at 447.601 kb on - strand, within OLJFJH_02490at 447.601 kb on - strand, within OLJFJH_02490at 447.601 kb on - strand, within OLJFJH_02490at 447.733 kb on - strand, within OLJFJH_02490at 447.942 kb on - strand, within OLJFJH_02490at 447.962 kb on - strand, within OLJFJH_02490at 447.962 kb on - strand, within OLJFJH_02490at 448.028 kb on - strand, within OLJFJH_02490at 448.118 kb on - strand, within OLJFJH_02490at 448.118 kb on - strand, within OLJFJH_02490at 448.119 kb on + strand, within OLJFJH_02490at 448.119 kb on + strand, within OLJFJH_02490at 448.119 kb on + strand, within OLJFJH_02490at 448.120 kb on - strand, within OLJFJH_02490at 448.120 kb on - strand, within OLJFJH_02490at 448.120 kb on - strand, within OLJFJH_02490at 448.120 kb on - strand, within OLJFJH_02490at 448.142 kb on - strand, within OLJFJH_02490at 448.232 kb on - strand, within OLJFJH_02490at 448.232 kb on - strand, within OLJFJH_02490at 448.315 kb on + strandat 448.406 kb on + strandat 448.406 kb on + strandat 448.407 kb on - strandat 448.408 kb on + strandat 448.419 kb on + strandat 448.419 kb on + strandat 448.420 kb on - strandat 448.512 kb on + strandat 448.512 kb on + strandat 448.530 kb on + strandat 448.531 kb on - strandat 448.555 kb on + strandat 448.556 kb on - strandat 448.556 kb on - strandat 448.585 kb on + strandat 448.585 kb on + strandat 448.586 kb on - strandat 448.586 kb on - strandat 448.586 kb on - strandat 448.589 kb on + strandat 448.589 kb on + strandat 448.589 kb on + strandat 448.589 kb on + strandat 448.590 kb on - strandat 448.650 kb on + strand, within OLJFJH_02495at 448.691 kb on + strand, within OLJFJH_02495at 449.000 kb on - strand, within OLJFJH_02495at 449.057 kb on + strand, within OLJFJH_02495at 449.058 kb on - strand, within OLJFJH_02495at 449.133 kb on + strand, within OLJFJH_02495at 449.134 kb on - strand, within OLJFJH_02495at 449.185 kb on + strand, within OLJFJH_02495at 449.185 kb on + strand, within OLJFJH_02495at 449.192 kb on + strand, within OLJFJH_02495at 449.224 kb on + strand, within OLJFJH_02495at 449.224 kb on + strand, within OLJFJH_02495at 449.225 kb on - strand, within OLJFJH_02495at 449.225 kb on - strand, within OLJFJH_02495at 449.225 kb on - strand, within OLJFJH_02495at 449.634 kb on + strand, within OLJFJH_02495at 449.634 kb on + strand, within OLJFJH_02495at 449.634 kb on + strand, within OLJFJH_02495at 449.635 kb on - strand, within OLJFJH_02495at 449.720 kb on + strandat 449.751 kb on + strandat 449.804 kb on + strandat 449.804 kb on + strandat 449.817 kb on + strandat 449.818 kb on - strandat 449.949 kb on - strandat 449.949 kb on - strandat 449.970 kb on - strandat 450.090 kb on + strand, within OLJFJH_02500at 450.091 kb on - strand, within OLJFJH_02500at 450.098 kb on + strand, within OLJFJH_02500at 450.099 kb on - strand, within OLJFJH_02500at 450.099 kb on - strand, within OLJFJH_02500at 450.099 kb on - strand, within OLJFJH_02500at 450.121 kb on - strand, within OLJFJH_02500at 450.124 kb on - strand, within OLJFJH_02500at 450.129 kb on + strand, within OLJFJH_02500at 450.178 kb on - strand, within OLJFJH_02500at 450.179 kb on + strand, within OLJFJH_02500at 450.180 kb on - strand, within OLJFJH_02500at 450.323 kb on - strandat 450.356 kb on + strandat 450.356 kb on + strandat 450.358 kb on + strandat 450.358 kb on + strandat 450.359 kb on - strandat 450.400 kb on - strandat 450.424 kb on + strandat 450.425 kb on - strandat 450.425 kb on - strandat 450.425 kb on - strandat 450.438 kb on + strandat 450.462 kb on + strandat 450.473 kb on - strandat 450.483 kb on + strandat 450.486 kb on - strandat 450.559 kb on - strand, within OLJFJH_02505at 450.559 kb on - strand, within OLJFJH_02505at 450.562 kb on + strand, within OLJFJH_02505at 450.563 kb on - strand, within OLJFJH_02505at 450.609 kb on + strand, within OLJFJH_02505

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-3
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447,535 - OLJFJH_02490 0.31 -0.1
447,600 + OLJFJH_02490 0.36 -0.4
447,600 + OLJFJH_02490 0.36 -2.1
447,601 - OLJFJH_02490 0.36 -0.6
447,601 - OLJFJH_02490 0.36 -1.6
447,601 - OLJFJH_02490 0.36 -2.0
447,733 - OLJFJH_02490 0.47 -0.8
447,942 - OLJFJH_02490 0.63 -0.3
447,962 - OLJFJH_02490 0.65 -0.6
447,962 - OLJFJH_02490 0.65 -2.2
448,028 - OLJFJH_02490 0.70 +0.9
448,118 - OLJFJH_02490 0.77 -0.4
448,118 - OLJFJH_02490 0.77 -0.9
448,119 + OLJFJH_02490 0.77 +0.1
448,119 + OLJFJH_02490 0.77 -0.6
448,119 + OLJFJH_02490 0.77 +0.4
448,120 - OLJFJH_02490 0.77 -0.3
448,120 - OLJFJH_02490 0.77 -1.3
448,120 - OLJFJH_02490 0.77 -0.6
448,120 - OLJFJH_02490 0.77 -0.5
448,142 - OLJFJH_02490 0.79 -0.8
448,232 - OLJFJH_02490 0.86 -0.2
448,232 - OLJFJH_02490 0.86 -0.2
448,315 + +2.0
448,406 + -0.5
448,406 + -0.8
448,407 - -2.0
448,408 + +0.3
448,419 + -0.8
448,419 + -1.7
448,420 - -0.4
448,512 + -1.0
448,512 + -0.4
448,530 + +0.5
448,531 - +0.8
448,555 + -0.7
448,556 - -0.8
448,556 - -1.1
448,585 + +1.1
448,585 + -0.4
448,586 - -1.1
448,586 - -0.3
448,586 - +1.0
448,589 + -1.9
448,589 + +1.7
448,589 + +0.1
448,589 + -0.6
448,590 - -0.8
448,650 + OLJFJH_02495 0.10 -1.3
448,691 + OLJFJH_02495 0.13 -1.0
449,000 - OLJFJH_02495 0.37 -1.8
449,057 + OLJFJH_02495 0.42 -0.8
449,058 - OLJFJH_02495 0.42 +0.4
449,133 + OLJFJH_02495 0.48 -1.0
449,134 - OLJFJH_02495 0.48 -2.1
449,185 + OLJFJH_02495 0.52 -0.5
449,185 + OLJFJH_02495 0.52 -0.8
449,192 + OLJFJH_02495 0.52 +0.2
449,224 + OLJFJH_02495 0.55 -1.6
449,224 + OLJFJH_02495 0.55 -1.8
449,225 - OLJFJH_02495 0.55 -0.4
449,225 - OLJFJH_02495 0.55 -0.9
449,225 - OLJFJH_02495 0.55 -1.0
449,634 + OLJFJH_02495 0.87 -0.6
449,634 + OLJFJH_02495 0.87 -1.0
449,634 + OLJFJH_02495 0.87 -2.2
449,635 - OLJFJH_02495 0.87 +0.3
449,720 + +1.1
449,751 + -1.8
449,804 + -0.3
449,804 + +0.4
449,817 + -0.4
449,818 - -0.1
449,949 - +0.4
449,949 - -0.2
449,970 - -0.8
450,090 + OLJFJH_02500 0.19 -0.1
450,091 - OLJFJH_02500 0.19 -1.3
450,098 + OLJFJH_02500 0.21 +0.8
450,099 - OLJFJH_02500 0.22 +0.5
450,099 - OLJFJH_02500 0.22 -0.4
450,099 - OLJFJH_02500 0.22 +0.1
450,121 - OLJFJH_02500 0.29 -1.1
450,124 - OLJFJH_02500 0.30 -0.9
450,129 + OLJFJH_02500 0.31 +1.0
450,178 - OLJFJH_02500 0.47 +0.5
450,179 + OLJFJH_02500 0.47 -1.1
450,180 - OLJFJH_02500 0.48 -2.0
450,323 - -0.9
450,356 + -0.0
450,356 + +0.3
450,358 + -1.3
450,358 + +1.2
450,359 - +1.9
450,400 - -0.1
450,424 + -0.2
450,425 - +0.2
450,425 - -1.1
450,425 - -0.5
450,438 + -0.6
450,462 + -0.4
450,473 - -0.3
450,483 + +0.1
450,486 - -1.7
450,559 - OLJFJH_02505 0.13 +0.4
450,559 - OLJFJH_02505 0.13 +1.0
450,562 + OLJFJH_02505 0.13 -0.7
450,563 - OLJFJH_02505 0.13 -1.0
450,609 + OLJFJH_02505 0.18 -1.5

Or see this region's nucleotide sequence