Strain Fitness in Erwinia amylovora T8 around OLJFJH_01285

Experiment: Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_01280 and OLJFJH_01285 are separated by 903 nucleotidesOLJFJH_01285 and OLJFJH_01290 are separated by 1 nucleotides OLJFJH_01280: OLJFJH_01280 - acetolactate synthase 3 large subunit, at 190,022 to 191,746 _01280 OLJFJH_01285: OLJFJH_01285 - 2-isopropylmalate synthase, at 192,650 to 194,218 _01285 OLJFJH_01290: OLJFJH_01290 - 3-isopropylmalate dehydrogenase, at 194,220 to 195,308 _01290 Position (kb) 192 193 194 195Strain fitness (log2 ratio) -3 -2 -1 0 1at 191.681 kb on + strandat 191.682 kb on - strandat 191.682 kb on - strandat 191.682 kb on - strandat 191.690 kb on + strandat 191.763 kb on + strandat 191.763 kb on + strandat 191.838 kb on + strandat 191.839 kb on - strandat 191.912 kb on - strandat 191.912 kb on - strandat 191.912 kb on - strandat 192.011 kb on - strandat 192.023 kb on - strandat 192.032 kb on + strandat 192.045 kb on + strandat 192.051 kb on + strandat 192.084 kb on - strandat 192.440 kb on + strandat 192.458 kb on - strandat 192.458 kb on - strandat 192.605 kb on - strandat 192.628 kb on - strandat 192.705 kb on + strandat 192.902 kb on + strand, within OLJFJH_01285at 192.903 kb on - strand, within OLJFJH_01285at 192.934 kb on + strand, within OLJFJH_01285at 192.934 kb on + strand, within OLJFJH_01285at 192.968 kb on - strand, within OLJFJH_01285at 193.044 kb on - strand, within OLJFJH_01285at 193.172 kb on - strand, within OLJFJH_01285at 193.176 kb on + strand, within OLJFJH_01285at 193.176 kb on + strand, within OLJFJH_01285at 193.177 kb on - strand, within OLJFJH_01285at 193.195 kb on + strand, within OLJFJH_01285at 193.255 kb on + strand, within OLJFJH_01285at 193.448 kb on + strand, within OLJFJH_01285at 193.484 kb on - strand, within OLJFJH_01285at 193.511 kb on - strand, within OLJFJH_01285at 193.511 kb on - strand, within OLJFJH_01285at 193.620 kb on + strand, within OLJFJH_01285at 193.700 kb on + strand, within OLJFJH_01285at 193.700 kb on + strand, within OLJFJH_01285at 193.701 kb on - strand, within OLJFJH_01285at 193.718 kb on + strand, within OLJFJH_01285at 193.719 kb on - strand, within OLJFJH_01285at 193.719 kb on - strand, within OLJFJH_01285at 193.719 kb on - strand, within OLJFJH_01285at 193.790 kb on - strand, within OLJFJH_01285at 193.818 kb on - strand, within OLJFJH_01285at 193.818 kb on - strand, within OLJFJH_01285at 193.947 kb on - strand, within OLJFJH_01285at 193.956 kb on + strand, within OLJFJH_01285at 193.964 kb on - strand, within OLJFJH_01285at 193.994 kb on + strand, within OLJFJH_01285at 194.057 kb on + strand, within OLJFJH_01285at 194.057 kb on + strand, within OLJFJH_01285at 194.057 kb on + strand, within OLJFJH_01285at 194.182 kb on + strandat 194.183 kb on - strandat 194.183 kb on - strandat 194.183 kb on - strandat 194.215 kb on - strandat 194.215 kb on - strandat 194.217 kb on - strandat 194.217 kb on - strandat 194.228 kb on + strandat 194.229 kb on - strandat 194.232 kb on + strandat 194.232 kb on + strandat 194.237 kb on + strandat 194.237 kb on + strandat 194.525 kb on + strand, within OLJFJH_01290at 194.652 kb on + strand, within OLJFJH_01290at 194.653 kb on - strand, within OLJFJH_01290at 194.653 kb on - strand, within OLJFJH_01290at 194.718 kb on + strand, within OLJFJH_01290at 194.718 kb on + strand, within OLJFJH_01290at 194.718 kb on + strand, within OLJFJH_01290at 194.719 kb on - strand, within OLJFJH_01290at 194.719 kb on - strand, within OLJFJH_01290at 194.750 kb on + strand, within OLJFJH_01290at 194.750 kb on + strand, within OLJFJH_01290at 194.751 kb on - strand, within OLJFJH_01290at 194.751 kb on - strand, within OLJFJH_01290at 194.751 kb on - strand, within OLJFJH_01290at 194.849 kb on + strand, within OLJFJH_01290at 194.849 kb on + strand, within OLJFJH_01290at 194.849 kb on + strand, within OLJFJH_01290at 194.888 kb on + strand, within OLJFJH_01290at 194.888 kb on + strand, within OLJFJH_01290at 194.888 kb on + strand, within OLJFJH_01290at 194.889 kb on - strand, within OLJFJH_01290at 194.889 kb on - strand, within OLJFJH_01290at 194.889 kb on - strand, within OLJFJH_01290at 194.889 kb on - strand, within OLJFJH_01290at 194.889 kb on - strand, within OLJFJH_01290at 194.889 kb on - strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 195.151 kb on - strand, within OLJFJH_01290

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:17;Samp:5-3
remove
191,681 + +1.3
191,682 - -0.5
191,682 - +0.4
191,682 - -0.2
191,690 + +0.0
191,763 + +1.4
191,763 + +0.6
191,838 + +0.2
191,839 - +0.9
191,912 - -1.2
191,912 - +0.0
191,912 - -0.4
192,011 - +0.7
192,023 - -0.3
192,032 + -1.1
192,045 + +0.1
192,051 + +0.2
192,084 - -1.3
192,440 + -2.0
192,458 - -1.7
192,458 - -1.1
192,605 - -1.1
192,628 - -1.3
192,705 + -1.9
192,902 + OLJFJH_01285 0.16 -1.7
192,903 - OLJFJH_01285 0.16 -1.9
192,934 + OLJFJH_01285 0.18 -2.4
192,934 + OLJFJH_01285 0.18 -3.7
192,968 - OLJFJH_01285 0.20 +0.3
193,044 - OLJFJH_01285 0.25 -0.9
193,172 - OLJFJH_01285 0.33 -1.9
193,176 + OLJFJH_01285 0.34 -2.5
193,176 + OLJFJH_01285 0.34 -0.2
193,177 - OLJFJH_01285 0.34 -1.6
193,195 + OLJFJH_01285 0.35 -1.4
193,255 + OLJFJH_01285 0.39 -2.2
193,448 + OLJFJH_01285 0.51 -1.7
193,484 - OLJFJH_01285 0.53 -2.6
193,511 - OLJFJH_01285 0.55 -1.4
193,511 - OLJFJH_01285 0.55 -2.1
193,620 + OLJFJH_01285 0.62 -1.6
193,700 + OLJFJH_01285 0.67 -0.9
193,700 + OLJFJH_01285 0.67 -2.8
193,701 - OLJFJH_01285 0.67 -0.5
193,718 + OLJFJH_01285 0.68 -1.3
193,719 - OLJFJH_01285 0.68 +0.9
193,719 - OLJFJH_01285 0.68 -1.4
193,719 - OLJFJH_01285 0.68 -2.0
193,790 - OLJFJH_01285 0.73 -1.0
193,818 - OLJFJH_01285 0.74 -2.1
193,818 - OLJFJH_01285 0.74 -0.7
193,947 - OLJFJH_01285 0.83 -1.2
193,956 + OLJFJH_01285 0.83 -0.1
193,964 - OLJFJH_01285 0.84 -1.3
193,994 + OLJFJH_01285 0.86 +0.8
194,057 + OLJFJH_01285 0.90 -0.3
194,057 + OLJFJH_01285 0.90 -1.2
194,057 + OLJFJH_01285 0.90 -0.7
194,182 + -0.5
194,183 - -2.9
194,183 - -1.5
194,183 - -1.6
194,215 - -2.5
194,215 - -1.7
194,217 - -3.0
194,217 - -2.8
194,228 + -2.5
194,229 - -2.3
194,232 + -0.6
194,232 + -0.9
194,237 + -2.8
194,237 + -1.2
194,525 + OLJFJH_01290 0.28 -2.7
194,652 + OLJFJH_01290 0.40 -2.1
194,653 - OLJFJH_01290 0.40 -1.6
194,653 - OLJFJH_01290 0.40 -1.3
194,718 + OLJFJH_01290 0.46 -2.1
194,718 + OLJFJH_01290 0.46 -2.9
194,718 + OLJFJH_01290 0.46 -0.9
194,719 - OLJFJH_01290 0.46 -2.8
194,719 - OLJFJH_01290 0.46 -0.1
194,750 + OLJFJH_01290 0.49 -2.3
194,750 + OLJFJH_01290 0.49 -2.2
194,751 - OLJFJH_01290 0.49 -2.1
194,751 - OLJFJH_01290 0.49 -2.6
194,751 - OLJFJH_01290 0.49 -2.4
194,849 + OLJFJH_01290 0.58 -2.8
194,849 + OLJFJH_01290 0.58 -2.7
194,849 + OLJFJH_01290 0.58 -3.1
194,888 + OLJFJH_01290 0.61 -1.7
194,888 + OLJFJH_01290 0.61 -2.1
194,888 + OLJFJH_01290 0.61 -2.1
194,889 - OLJFJH_01290 0.61 -2.0
194,889 - OLJFJH_01290 0.61 -2.2
194,889 - OLJFJH_01290 0.61 -1.4
194,889 - OLJFJH_01290 0.61 -3.0
194,889 - OLJFJH_01290 0.61 -2.0
194,889 - OLJFJH_01290 0.61 -1.4
194,892 + OLJFJH_01290 0.62 -3.0
194,892 + OLJFJH_01290 0.62 -2.6
194,892 + OLJFJH_01290 0.62 -0.6
194,892 + OLJFJH_01290 0.62 -3.5
194,892 + OLJFJH_01290 0.62 -2.4
194,892 + OLJFJH_01290 0.62 -1.8
194,892 + OLJFJH_01290 0.62 -2.6
194,892 + OLJFJH_01290 0.62 -0.0
194,892 + OLJFJH_01290 0.62 -2.7
194,892 + OLJFJH_01290 0.62 -2.1
194,892 + OLJFJH_01290 0.62 -1.5
194,892 + OLJFJH_01290 0.62 -3.3
194,892 + OLJFJH_01290 0.62 -3.6
194,892 + OLJFJH_01290 0.62 -2.6
194,892 + OLJFJH_01290 0.62 -2.7
194,892 + OLJFJH_01290 0.62 -1.9
194,892 + OLJFJH_01290 0.62 -2.8
194,892 + OLJFJH_01290 0.62 -2.7
194,892 + OLJFJH_01290 0.62 -1.1
194,893 - OLJFJH_01290 0.62 -2.1
194,893 - OLJFJH_01290 0.62 -2.4
194,893 - OLJFJH_01290 0.62 -1.3
194,893 - OLJFJH_01290 0.62 -0.7
194,893 - OLJFJH_01290 0.62 -2.4
194,893 - OLJFJH_01290 0.62 -3.7
194,893 - OLJFJH_01290 0.62 -2.2
194,893 - OLJFJH_01290 0.62 -1.7
194,893 - OLJFJH_01290 0.62 -1.7
194,893 - OLJFJH_01290 0.62 -2.1
194,893 - OLJFJH_01290 0.62 -2.1
194,893 - OLJFJH_01290 0.62 -3.4
194,893 - OLJFJH_01290 0.62 -0.9
194,893 - OLJFJH_01290 0.62 -2.0
194,893 - OLJFJH_01290 0.62 -1.4
195,151 - OLJFJH_01290 0.85 -2.3

Or see this region's nucleotide sequence