Strain Fitness in Escherichia coli ECOR38 around HEPCGN_23030

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
3,390,365	-				+0.1
3,390,365	-				-0.6
3,390,373	-				-0.1
3,390,448	-	ycaP	HEPCGN_23025	0.10	+0.3
3,390,469	-	ycaP	HEPCGN_23025	0.13	+0.1
3,390,581	+	ycaP	HEPCGN_23025	0.29	-0.5
3,390,606	+	ycaP	HEPCGN_23025	0.33	-0.2
3,390,610	+	ycaP	HEPCGN_23025	0.34	-0.2
3,390,610	+	ycaP	HEPCGN_23025	0.34	-0.4
3,390,611	-	ycaP	HEPCGN_23025	0.34	-0.6
3,390,636	+	ycaP	HEPCGN_23025	0.37	+0.3
3,390,639	-	ycaP	HEPCGN_23025	0.38	+0.9
3,390,639	-	ycaP	HEPCGN_23025	0.38	-3.2
3,390,649	-	ycaP	HEPCGN_23025	0.39	+0.3
3,390,801	+	ycaP	HEPCGN_23025	0.61	+0.1
3,390,860	+	ycaP	HEPCGN_23025	0.70	-0.2
3,390,860	+	ycaP	HEPCGN_23025	0.70	+0.5
3,390,860	+	ycaP	HEPCGN_23025	0.70	-0.8
3,390,954	-	ycaP	HEPCGN_23025	0.83	-0.0
3,390,954	-	ycaP	HEPCGN_23025	0.83	+0.9
3,390,985	+	ycaP	HEPCGN_23025	0.88	+0.1
3,390,986	-	ycaP	HEPCGN_23025	0.88	-1.6
3,391,008	+				-0.1
3,391,096	+				-0.5
3,391,152	-				+0.2
3,391,206	+				+0.0
3,391,206	+				+0.4
3,391,207	-				-4.4
3,391,210	-				-4.9
3,391,243	+				+0.1
3,391,243	+				-1.9
3,391,244	-				-5.6
3,391,324	+				-3.9
3,391,366	+				-5.5
3,391,367	-				-5.2
3,391,451	-	serC	HEPCGN_23030	0.17	-5.5
3,391,474	-	serC	HEPCGN_23030	0.19	-2.2
3,391,537	+	serC	HEPCGN_23030	0.25	-1.7
3,391,537	+	serC	HEPCGN_23030	0.25	-3.9
3,391,553	+	serC	HEPCGN_23030	0.26	-3.9
3,391,553	+	serC	HEPCGN_23030	0.26	-3.2
3,391,615	+	serC	HEPCGN_23030	0.32	-3.7
3,391,616	-	serC	HEPCGN_23030	0.32	-2.6
3,391,700	+	serC	HEPCGN_23030	0.40	-5.7
3,391,702	+	serC	HEPCGN_23030	0.40	-5.1
3,391,703	-	serC	HEPCGN_23030	0.40	-3.6
3,391,703	-	serC	HEPCGN_23030	0.40	-3.8
3,391,982	-	serC	HEPCGN_23030	0.66	-4.4
3,392,006	+	serC	HEPCGN_23030	0.68	-5.0
3,392,007	-	serC	HEPCGN_23030	0.68	-4.0
3,392,007	-	serC	HEPCGN_23030	0.68	-5.2
3,392,026	+	serC	HEPCGN_23030	0.70	-4.5
3,392,027	-	serC	HEPCGN_23030	0.70	-3.6
3,392,283	-				-5.0
3,392,283	-				-3.1
3,392,284	+				-5.8
3,392,443	+				-3.1
3,392,443	+				-5.4
3,392,443	+				-3.1
3,392,472	-				-3.0
3,392,474	+				-3.6
3,392,475	-				-3.9
3,392,538	-				-0.1
3,392,546	-				-4.5
3,392,548	+				-2.7
3,392,549	-				-1.9
3,392,581	-	aroA	HEPCGN_23035	0.12	-4.0
3,392,581	-	aroA	HEPCGN_23035	0.12	-2.1
3,392,583	-	aroA	HEPCGN_23035	0.12	-5.4
3,392,588	+	aroA	HEPCGN_23035	0.13	-1.7
3,392,616	+	aroA	HEPCGN_23035	0.15	-2.9
3,392,637	-	aroA	HEPCGN_23035	0.16	-4.3
3,392,637	-	aroA	HEPCGN_23035	0.16	-3.5
3,392,671	+	aroA	HEPCGN_23035	0.19	-4.6
3,392,672	-	aroA	HEPCGN_23035	0.19	-1.9
3,392,672	-	aroA	HEPCGN_23035	0.19	-1.4
3,392,762	+	aroA	HEPCGN_23035	0.26	-2.9
3,392,767	+	aroA	HEPCGN_23035	0.26	-5.0
3,392,767	+	aroA	HEPCGN_23035	0.26	-5.0
3,392,786	+	aroA	HEPCGN_23035	0.28	-3.4
3,392,884	+	aroA	HEPCGN_23035	0.36	-3.3
3,392,953	+	aroA	HEPCGN_23035	0.41	-2.8
3,392,957	-	aroA	HEPCGN_23035	0.41	-4.2
3,393,000	-	aroA	HEPCGN_23035	0.45	-3.5
3,393,024	+	aroA	HEPCGN_23035	0.46	-4.5
3,393,024	+	aroA	HEPCGN_23035	0.46	-0.7
3,393,024	+	aroA	HEPCGN_23035	0.46	-3.2
3,393,024	+	aroA	HEPCGN_23035	0.46	-4.0
3,393,025	-	aroA	HEPCGN_23035	0.47	-2.8
3,393,025	-	aroA	HEPCGN_23035	0.47	-3.6
3,393,026	+	aroA	HEPCGN_23035	0.47	-4.3
3,393,135	+	aroA	HEPCGN_23035	0.55	-2.4
3,393,135	+	aroA	HEPCGN_23035	0.55	-4.5
3,393,168	+	aroA	HEPCGN_23035	0.58	+0.1
3,393,168	+	aroA	HEPCGN_23035	0.58	-1.8
3,393,168	+	aroA	HEPCGN_23035	0.58	-3.3
3,393,168	+	aroA	HEPCGN_23035	0.58	-2.4
3,393,168	+	aroA	HEPCGN_23035	0.58	-4.2
3,393,169	-	aroA	HEPCGN_23035	0.58	-3.9
3,393,206	-	aroA	HEPCGN_23035	0.61	-4.7
3,393,233	+	aroA	HEPCGN_23035	0.63	-2.4
3,393,233	+	aroA	HEPCGN_23035	0.63	-3.9
3,393,234	-	aroA	HEPCGN_23035	0.63	-2.4
3,393,303	+	aroA	HEPCGN_23035	0.68	-3.4
3,393,305	+	aroA	HEPCGN_23035	0.68	-2.1
3,393,306	-	aroA	HEPCGN_23035	0.68	-0.7
3,393,306	-	aroA	HEPCGN_23035	0.68	-4.7
3,393,306	-	aroA	HEPCGN_23035	0.68	-4.9