Strain Fitness in Escherichia coli ECOR38 around HEPCGN_15335

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
1,827,794	+				+0.3
1,827,824	+				-0.1
1,827,858	-				+0.1
1,828,072	+	rsmJ	HEPCGN_15330	0.35	-0.0
1,828,256	+	rsmJ	HEPCGN_15330	0.59	+0.2
1,828,257	-	rsmJ	HEPCGN_15330	0.59	-0.1
1,828,290	+	rsmJ	HEPCGN_15330	0.64	+0.6
1,828,291	-	rsmJ	HEPCGN_15330	0.64	-0.4
1,828,293	+	rsmJ	HEPCGN_15330	0.64	+0.4
1,828,474	+	rsmJ	HEPCGN_15330	0.88	+0.2
1,828,539	+				+0.1
1,828,543	+				-0.4
1,828,544	-				+0.2
1,828,544	-				+0.1
1,828,561	+				-0.1
1,828,609	+				-0.0
1,828,613	+				+0.6
1,828,689	+				+1.4
1,828,719	+				-0.0
1,828,719	+				-0.8
1,828,719	+				-0.1
1,828,722	-				+0.4
1,828,894	-	dtpB	HEPCGN_15335	0.19	+0.5
1,828,896	+	dtpB	HEPCGN_15335	0.19	-0.2
1,828,897	-	dtpB	HEPCGN_15335	0.19	+1.0
1,828,922	-	dtpB	HEPCGN_15335	0.21	+1.3
1,828,925	+	dtpB	HEPCGN_15335	0.21	+0.3
1,828,926	-	dtpB	HEPCGN_15335	0.21	+0.3
1,829,019	+	dtpB	HEPCGN_15335	0.28	+0.5
1,829,085	-	dtpB	HEPCGN_15335	0.32	+0.6
1,829,237	+	dtpB	HEPCGN_15335	0.43	+0.4
1,829,283	+	dtpB	HEPCGN_15335	0.46	-0.5
1,829,377	+	dtpB	HEPCGN_15335	0.52	-0.4
1,829,378	-	dtpB	HEPCGN_15335	0.52	+0.3
1,829,378	-	dtpB	HEPCGN_15335	0.52	+0.3
1,829,435	+	dtpB	HEPCGN_15335	0.56	-0.3
1,829,436	-	dtpB	HEPCGN_15335	0.56	+0.4
1,829,514	-	dtpB	HEPCGN_15335	0.61	+0.5
1,829,556	-	dtpB	HEPCGN_15335	0.64	-0.2
1,829,556	-	dtpB	HEPCGN_15335	0.64	+0.5
1,829,556	-	dtpB	HEPCGN_15335	0.64	-0.0
1,829,567	+	dtpB	HEPCGN_15335	0.65	+0.7
1,829,567	+	dtpB	HEPCGN_15335	0.65	+0.5
1,829,577	+	dtpB	HEPCGN_15335	0.66	+0.3
1,829,634	+	dtpB	HEPCGN_15335	0.70	-0.1
1,829,635	-	dtpB	HEPCGN_15335	0.70	+0.2
1,829,636	+	dtpB	HEPCGN_15335	0.70	+0.4
1,829,636	+	dtpB	HEPCGN_15335	0.70	+0.9
1,829,636	+	dtpB	HEPCGN_15335	0.70	+0.4
1,829,637	-	dtpB	HEPCGN_15335	0.70	+0.2
1,829,637	-	dtpB	HEPCGN_15335	0.70	+0.4
1,829,637	-	dtpB	HEPCGN_15335	0.70	-1.4
1,829,637	-	dtpB	HEPCGN_15335	0.70	+0.1
1,829,646	+	dtpB	HEPCGN_15335	0.70	+1.0
1,829,647	-	dtpB	HEPCGN_15335	0.70	-0.5
1,829,710	-	dtpB	HEPCGN_15335	0.75	-1.9
1,829,740	-	dtpB	HEPCGN_15335	0.77	+0.5
1,829,772	+	dtpB	HEPCGN_15335	0.79	-0.4
1,829,772	+	dtpB	HEPCGN_15335	0.79	+1.1
1,829,773	-	dtpB	HEPCGN_15335	0.79	-0.8
1,829,773	-	dtpB	HEPCGN_15335	0.79	+0.4
1,829,773	-	dtpB	HEPCGN_15335	0.79	+0.4
1,829,773	-	dtpB	HEPCGN_15335	0.79	+0.2
1,829,891	+	dtpB	HEPCGN_15335	0.87	-0.3
1,829,991	-				+0.0
1,830,011	-				+0.9
1,830,075	+				+0.3
1,830,075	+				+0.5
1,830,075	+				+0.7
1,830,075	+				+0.2
1,830,076	-				+0.2
1,830,076	-				+1.1
1,830,081	+				-1.5
1,830,082	-				-0.3
1,830,082	-				-0.2
1,830,086	-				+0.5
1,830,099	+				-1.1
1,830,099	+				-0.1
1,830,114	+				+0.8
1,830,149	-				-0.1
1,830,168	-				+0.4
1,830,168	-				-0.5
1,830,171	-				+0.1
1,830,191	-				+0.2
1,830,198	+				+0.2
1,830,198	+				+0.9
1,830,199	-				-1.4
1,830,231	-				+0.5
1,830,231	-				-1.7
1,830,244	-				-2.4
1,830,264	-		HEPCGN_15340	0.31	+0.3
1,830,308	-				+0.0
1,830,316	+				-0.0
1,830,361	+				+0.4
1,830,432	+				-0.3
1,830,432	+				+0.2
1,830,527	+	uspA	HEPCGN_15345	0.30	+0.5
1,830,527	+	uspA	HEPCGN_15345	0.30	+0.2
1,830,606	+	uspA	HEPCGN_15345	0.48	+0.8
1,830,607	-	uspA	HEPCGN_15345	0.48	+0.4
1,830,660	+	uspA	HEPCGN_15345	0.60	-0.9
1,830,692	+	uspA	HEPCGN_15345	0.68	+0.4
1,830,693	-	uspA	HEPCGN_15345	0.68	+0.2
1,830,694	+	uspA	HEPCGN_15345	0.68	-0.1
1,830,695	-	uspA	HEPCGN_15345	0.69	+0.0
1,830,704	+	uspA	HEPCGN_15345	0.71	+0.0
1,830,709	+	uspA	HEPCGN_15345	0.72	-0.5
1,830,709	+	uspA	HEPCGN_15345	0.72	+0.1
1,830,709	+	uspA	HEPCGN_15345	0.72	+0.5
1,830,709	+	uspA	HEPCGN_15345	0.72	-0.5
1,830,709	+	uspA	HEPCGN_15345	0.72	-0.4
1,830,710	-	uspA	HEPCGN_15345	0.72	-0.4
1,830,715	+	uspA	HEPCGN_15345	0.73	-1.0
1,830,716	-	uspA	HEPCGN_15345	0.73	+0.6
1,830,716	-	uspA	HEPCGN_15345	0.73	+0.9
1,830,716	-	uspA	HEPCGN_15345	0.73	-0.7
1,830,716	-	uspA	HEPCGN_15345	0.73	+0.7
1,830,756	+	uspA	HEPCGN_15345	0.83	+0.0
1,830,757	-	uspA	HEPCGN_15345	0.83	+0.1
1,830,823	-				+0.6
1,830,824	+				-0.3
1,830,824	+				-0.5
1,830,825	-				+0.6
1,830,831	+				+0.1
1,830,832	-				+0.2
1,830,837	+				+0.2
1,830,848	+				+0.4
1,830,873	-				-0.0
1,830,913	+				+0.0
1,830,914	-				-0.3
1,830,953	-				+0.3
1,830,964	+				-0.3
1,830,964	+				+0.0
1,830,965	-				-0.1
1,830,969	+				-0.3
1,830,972	-				+0.1
1,831,037	+				-0.1
1,831,039	+				+0.1
1,831,040	-				-0.1
1,831,040	-				+0.2
1,831,045	+				+0.2