Strain Fitness in Escherichia coli ECOR38 around HEPCGN_13610

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpstA and pstB are separated by 90 nucleotidespstB and phoU are separated by 14 nucleotidesphoU and HEPCGN_13615 are separated by 426 nucleotides HEPCGN_13600: pstA - phosphate ABC transporter permease PstA, at 1,467,863 to 1,468,753 pstA HEPCGN_13605: pstB - phosphate ABC transporter ATP-binding protein PstB, at 1,468,844 to 1,469,617 pstB HEPCGN_13610: phoU - phosphate signaling complex protein PhoU, at 1,469,632 to 1,470,357 phoU HEPCGN_13615: HEPCGN_13615 - Type III effector protein, at 1,470,784 to 1,473,273 _13615 Position (kb) 1469 1470 1471Strain fitness (log2 ratio) -1 0 1at 1468.849 kb on + strandat 1468.885 kb on + strandat 1469.416 kb on + strand, within pstBat 1469.450 kb on + strand, within pstBat 1469.519 kb on + strand, within pstBat 1469.594 kb on + strandat 1470.415 kb on - strandat 1470.418 kb on + strandat 1470.418 kb on + strandat 1470.418 kb on + strandat 1470.418 kb on + strandat 1470.418 kb on + strandat 1470.418 kb on + strandat 1470.419 kb on - strandat 1470.419 kb on - strandat 1470.419 kb on - strandat 1470.674 kb on - strandat 1470.688 kb on + strandat 1470.688 kb on + strandat 1470.790 kb on - strandat 1470.799 kb on + strandat 1470.944 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,468,849 + -1.4
1,468,885 + -1.5
1,469,416 + pstB HEPCGN_13605 0.74 -1.2
1,469,450 + pstB HEPCGN_13605 0.78 +0.7
1,469,519 + pstB HEPCGN_13605 0.87 -1.3
1,469,594 + -1.4
1,470,415 - +0.5
1,470,418 + +0.0
1,470,418 + -0.1
1,470,418 + +0.5
1,470,418 + +0.1
1,470,418 + +0.1
1,470,418 + +0.5
1,470,419 - +0.5
1,470,419 - +0.1
1,470,419 - +0.5
1,470,674 - +0.7
1,470,688 + -0.2
1,470,688 + +1.0
1,470,790 - +0.5
1,470,799 + -0.8
1,470,944 + +0.8

Or see this region's nucleotide sequence