Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ulaG and ulaR are separated by 107 nucleotides ulaR and yjfP overlap by 4 nucleotides yjfP and bsmA are separated by 181 nucleotides
HEPCGN_10385: ulaG - L-ascorbate 6-phosphate lactonase, at 820,435 to 821,499
ulaG
HEPCGN_10390: ulaR - HTH-type transcriptional regulator UlaR, at 821,607 to 822,362
ulaR
HEPCGN_10395: yjfP - esterase, at 822,359 to 823,108
yjfP
HEPCGN_10400: bsmA - biofilm peroxide resistance protein BsmA, at 823,290 to 823,619
bsmA
Position (kb) 821
822
823 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 820.851 kb on - strand, within ulaG at 820.990 kb on - strand, within ulaG at 821.063 kb on + strand, within ulaG at 821.063 kb on + strand, within ulaG at 821.125 kb on - strand, within ulaG at 821.125 kb on - strand, within ulaG at 821.128 kb on + strand, within ulaG at 821.129 kb on - strand, within ulaG at 821.129 kb on - strand, within ulaG at 821.129 kb on - strand, within ulaG at 821.129 kb on - strand, within ulaG at 821.179 kb on + strand, within ulaG at 821.203 kb on - strand, within ulaG at 821.356 kb on + strand, within ulaG at 821.374 kb on - strand, within ulaG at 821.463 kb on + strand at 821.497 kb on + strand at 821.528 kb on + strand at 821.547 kb on + strand at 821.550 kb on + strand at 821.570 kb on + strand at 821.729 kb on + strand, within ulaR at 821.780 kb on + strand, within ulaR at 821.781 kb on - strand, within ulaR at 821.781 kb on - strand, within ulaR at 821.781 kb on - strand, within ulaR at 821.852 kb on + strand, within ulaR at 821.859 kb on - strand, within ulaR at 821.969 kb on + strand, within ulaR at 821.969 kb on + strand, within ulaR at 821.969 kb on + strand, within ulaR at 821.970 kb on - strand, within ulaR at 821.970 kb on - strand, within ulaR at 821.991 kb on + strand, within ulaR at 821.991 kb on + strand, within ulaR at 822.040 kb on - strand, within ulaR at 822.040 kb on - strand, within ulaR at 822.093 kb on + strand, within ulaR at 822.094 kb on - strand, within ulaR at 822.094 kb on - strand, within ulaR at 822.147 kb on + strand, within ulaR at 822.149 kb on + strand, within ulaR at 822.158 kb on + strand, within ulaR at 822.159 kb on - strand, within ulaR at 822.225 kb on - strand, within ulaR at 822.230 kb on + strand, within ulaR at 822.395 kb on + strand at 822.396 kb on - strand at 822.396 kb on - strand at 822.396 kb on - strand at 822.454 kb on + strand, within yjfP at 822.679 kb on + strand, within yjfP at 822.680 kb on - strand, within yjfP at 822.680 kb on - strand, within yjfP at 822.827 kb on + strand, within yjfP at 822.828 kb on - strand, within yjfP at 822.833 kb on - strand, within yjfP at 822.847 kb on + strand, within yjfP at 822.848 kb on - strand, within yjfP at 822.848 kb on - strand, within yjfP at 822.848 kb on - strand, within yjfP at 822.855 kb on - strand, within yjfP at 822.975 kb on + strand, within yjfP at 822.979 kb on + strand, within yjfP at 822.979 kb on + strand, within yjfP at 822.979 kb on + strand, within yjfP at 822.980 kb on - strand, within yjfP at 822.980 kb on - strand, within yjfP at 822.980 kb on - strand, within yjfP at 822.982 kb on - strand, within yjfP at 822.982 kb on - strand, within yjfP at 822.982 kb on - strand, within yjfP at 823.000 kb on + strand, within yjfP at 823.001 kb on - strand, within yjfP at 823.076 kb on - strand at 823.098 kb on - strand at 823.174 kb on + strand at 823.174 kb on + strand at 823.175 kb on - strand at 823.182 kb on - strand at 823.182 kb on - strand at 823.273 kb on + strand at 823.276 kb on + strand at 823.276 kb on + strand at 823.277 kb on - strand at 823.284 kb on + strand at 823.284 kb on + strand at 823.284 kb on + strand at 823.285 kb on - strand at 823.285 kb on - strand at 823.289 kb on + strand at 823.289 kb on + strand at 823.307 kb on + strand at 823.307 kb on + strand at 823.308 kb on - strand at 823.310 kb on + strand at 823.311 kb on - strand at 823.317 kb on - strand at 823.336 kb on + strand, within bsmA at 823.354 kb on + strand, within bsmA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 820,851 - ulaG HEPCGN_10385 0.39 -0.7 820,990 - ulaG HEPCGN_10385 0.52 +0.4 821,063 + ulaG HEPCGN_10385 0.59 +0.5 821,063 + ulaG HEPCGN_10385 0.59 -0.1 821,125 - ulaG HEPCGN_10385 0.65 +0.4 821,125 - ulaG HEPCGN_10385 0.65 -0.0 821,128 + ulaG HEPCGN_10385 0.65 +0.5 821,129 - ulaG HEPCGN_10385 0.65 +1.7 821,129 - ulaG HEPCGN_10385 0.65 -0.7 821,129 - ulaG HEPCGN_10385 0.65 -1.6 821,129 - ulaG HEPCGN_10385 0.65 -0.3 821,179 + ulaG HEPCGN_10385 0.70 -0.3 821,203 - ulaG HEPCGN_10385 0.72 +0.1 821,356 + ulaG HEPCGN_10385 0.86 +0.3 821,374 - ulaG HEPCGN_10385 0.88 +0.2 821,463 + -0.1 821,497 + -0.7 821,528 + +0.0 821,547 + -0.0 821,550 + -0.4 821,570 + +0.0 821,729 + ulaR HEPCGN_10390 0.16 -3.8 821,780 + ulaR HEPCGN_10390 0.23 -0.6 821,781 - ulaR HEPCGN_10390 0.23 -0.7 821,781 - ulaR HEPCGN_10390 0.23 +1.1 821,781 - ulaR HEPCGN_10390 0.23 -2.7 821,852 + ulaR HEPCGN_10390 0.32 +0.7 821,859 - ulaR HEPCGN_10390 0.33 -1.0 821,969 + ulaR HEPCGN_10390 0.48 -0.6 821,969 + ulaR HEPCGN_10390 0.48 -0.5 821,969 + ulaR HEPCGN_10390 0.48 +0.2 821,970 - ulaR HEPCGN_10390 0.48 +0.3 821,970 - ulaR HEPCGN_10390 0.48 -0.4 821,991 + ulaR HEPCGN_10390 0.51 -1.4 821,991 + ulaR HEPCGN_10390 0.51 -0.6 822,040 - ulaR HEPCGN_10390 0.57 -1.8 822,040 - ulaR HEPCGN_10390 0.57 +0.4 822,093 + ulaR HEPCGN_10390 0.64 +0.3 822,094 - ulaR HEPCGN_10390 0.64 +0.2 822,094 - ulaR HEPCGN_10390 0.64 -0.3 822,147 + ulaR HEPCGN_10390 0.71 +0.4 822,149 + ulaR HEPCGN_10390 0.72 +1.3 822,158 + ulaR HEPCGN_10390 0.73 +0.2 822,159 - ulaR HEPCGN_10390 0.73 -0.1 822,225 - ulaR HEPCGN_10390 0.82 -3.0 822,230 + ulaR HEPCGN_10390 0.82 -0.2 822,395 + -0.5 822,396 - +0.2 822,396 - -2.2 822,396 - +0.2 822,454 + yjfP HEPCGN_10395 0.13 -0.5 822,679 + yjfP HEPCGN_10395 0.43 -0.1 822,680 - yjfP HEPCGN_10395 0.43 -0.1 822,680 - yjfP HEPCGN_10395 0.43 -1.2 822,827 + yjfP HEPCGN_10395 0.62 +0.4 822,828 - yjfP HEPCGN_10395 0.63 +0.7 822,833 - yjfP HEPCGN_10395 0.63 +0.0 822,847 + yjfP HEPCGN_10395 0.65 +0.7 822,848 - yjfP HEPCGN_10395 0.65 +0.3 822,848 - yjfP HEPCGN_10395 0.65 -0.4 822,848 - yjfP HEPCGN_10395 0.65 +0.3 822,855 - yjfP HEPCGN_10395 0.66 +0.0 822,975 + yjfP HEPCGN_10395 0.82 -0.2 822,979 + yjfP HEPCGN_10395 0.83 -0.2 822,979 + yjfP HEPCGN_10395 0.83 +0.2 822,979 + yjfP HEPCGN_10395 0.83 +0.7 822,980 - yjfP HEPCGN_10395 0.83 -0.7 822,980 - yjfP HEPCGN_10395 0.83 +0.3 822,980 - yjfP HEPCGN_10395 0.83 +0.8 822,982 - yjfP HEPCGN_10395 0.83 -0.5 822,982 - yjfP HEPCGN_10395 0.83 +0.7 822,982 - yjfP HEPCGN_10395 0.83 -0.3 823,000 + yjfP HEPCGN_10395 0.85 +0.8 823,001 - yjfP HEPCGN_10395 0.86 -0.2 823,076 - +0.1 823,098 - +0.5 823,174 + +1.8 823,174 + -1.5 823,175 - +0.5 823,182 - -0.2 823,182 - -0.1 823,273 + +0.3 823,276 + +0.5 823,276 + -0.6 823,277 - +0.9 823,284 + +0.7 823,284 + -0.2 823,284 + +0.4 823,285 - -0.2 823,285 - +0.1 823,289 + +0.1 823,289 + -1.3 823,307 + -0.2 823,307 + -0.1 823,308 - -0.1 823,310 + +0.2 823,311 - -0.1 823,317 - +0.4 823,336 + bsmA HEPCGN_10400 0.14 -1.2 823,354 + bsmA HEPCGN_10400 0.19 +0.9
Or see this region's nucleotide sequence