Strain Fitness in Escherichia coli ECOR38 around HEPCGN_08020

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntproS and tnp-IS3 are separated by 95 nucleotidestnp-IS3 and HEPCGN_08025 are separated by 128 nucleotides HEPCGN_08015: proS - proline--tRNA ligase, at 338,187 to 339,905 proS HEPCGN_08020: tnp-IS3 - IS3 family transposase, at 340,001 to 340,441 tnp-IS3 HEPCGN_08025: HEPCGN_08025 - reverse transcriptase domain-containing protein, at 340,570 to 341,745 _08025 Position (kb) 340 341Strain fitness (log2 ratio) -1 0 1at 339.896 kb on + strandat 339.954 kb on + strandat 339.955 kb on - strandat 339.996 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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339,896 + +0.9
339,954 + +1.0
339,955 - +1.0
339,996 - +0.3

Or see this region's nucleotide sequence