Strain Fitness in Escherichia coli ECOR38 around HEPCGN_05925

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
1,054,136	+	rsxE	HEPCGN_05915	0.53	+0.3
1,054,136	+	rsxE	HEPCGN_05915	0.53	+2.2
1,054,137	-	rsxE	HEPCGN_05915	0.53	-0.5
1,054,160	+	rsxE	HEPCGN_05915	0.56	+0.1
1,054,249	+	rsxE	HEPCGN_05915	0.69	+3.1
1,054,520	-				-0.6
1,054,520	-				-1.5
1,054,853	-	rsxG	HEPCGN_05920	0.62	+0.3
1,054,853	-	rsxG	HEPCGN_05920	0.62	-1.5
1,054,875	+	rsxG	HEPCGN_05920	0.66	-1.7
1,054,876	-	rsxG	HEPCGN_05920	0.66	-1.3
1,054,924	+	rsxG	HEPCGN_05920	0.74	+0.5
1,055,110	+				+0.6
1,055,220	+	rsxD	HEPCGN_05925	0.12	-2.3
1,055,224	-	rsxD	HEPCGN_05925	0.13	+0.5
1,055,267	+	rsxD	HEPCGN_05925	0.17	-0.3
1,055,268	-	rsxD	HEPCGN_05925	0.17	-2.6
1,055,403	+	rsxD	HEPCGN_05925	0.29	+1.0
1,055,574	-	rsxD	HEPCGN_05925	0.46	-0.6
1,055,580	-	rsxD	HEPCGN_05925	0.46	-0.5
1,055,617	-	rsxD	HEPCGN_05925	0.50	+0.2
1,055,633	+	rsxD	HEPCGN_05925	0.51	-0.9
1,055,673	+	rsxD	HEPCGN_05925	0.55	+0.1
1,055,684	+	rsxD	HEPCGN_05925	0.56	-1.3
1,055,813	-	rsxD	HEPCGN_05925	0.68	-0.8
1,055,886	-	rsxD	HEPCGN_05925	0.75	+1.1
1,055,958	+	rsxD	HEPCGN_05925	0.82	-0.4
1,055,958	+	rsxD	HEPCGN_05925	0.82	-1.4
1,055,959	-	rsxD	HEPCGN_05925	0.82	-1.4
1,055,959	-	rsxD	HEPCGN_05925	0.82	+0.5
1,055,959	-	rsxD	HEPCGN_05925	0.82	-1.8
1,056,090	-				-1.9
1,056,119	+				+0.4
1,056,119	+				+0.1
1,056,121	+				+0.8
1,056,131	+				-1.0
1,056,132	-				+0.3
1,056,135	+				+1.9
1,056,260	+				+0.4
1,056,644	+	rsxC	HEPCGN_05930	0.22	-0.2
1,056,708	-	rsxC	HEPCGN_05930	0.25	+0.4
1,056,779	+	rsxC	HEPCGN_05930	0.28	-0.9
1,056,938	+	rsxC	HEPCGN_05930	0.35	-1.1
1,056,938	+	rsxC	HEPCGN_05930	0.35	+3.0
1,056,939	-	rsxC	HEPCGN_05930	0.35	+0.9
1,057,070	-	rsxC	HEPCGN_05930	0.41	-0.9
1,057,070	-	rsxC	HEPCGN_05930	0.41	-0.3
1,057,070	-	rsxC	HEPCGN_05930	0.41	-1.0
1,057,085	+	rsxC	HEPCGN_05930	0.42	-0.4
1,057,086	-	rsxC	HEPCGN_05930	0.42	-0.3