Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_24510 and NOLOHH_24515 are separated by 2 nucleotides NOLOHH_24515 and NOLOHH_24520 are separated by 216 nucleotides NOLOHH_24520 and NOLOHH_24525 are separated by 76 nucleotides
NOLOHH_24510: NOLOHH_24510 - pilus biosynthesis protein, at 46,093 to 47,214
_24510
NOLOHH_24515: NOLOHH_24515 - prepilin peptidase, at 47,217 to 48,071
_24515
NOLOHH_24520: NOLOHH_24520 - hypothetical protein, at 48,288 to 48,860
_24520
NOLOHH_24525: NOLOHH_24525 - alpha/beta hydrolase, at 48,937 to 49,731
_24525
Position (kb) 47
48
49 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 46.278 kb on + strand, within NOLOHH_24510 at 46.312 kb on + strand, within NOLOHH_24510 at 46.393 kb on - strand, within NOLOHH_24510 at 46.521 kb on + strand, within NOLOHH_24510 at 46.809 kb on + strand, within NOLOHH_24510 at 46.810 kb on - strand, within NOLOHH_24510 at 46.872 kb on + strand, within NOLOHH_24510 at 47.216 kb on + strand at 47.414 kb on + strand, within NOLOHH_24515 at 47.607 kb on - strand, within NOLOHH_24515 at 48.150 kb on + strand at 48.811 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 46,278 + NOLOHH_24510 0.16 -1.3 46,312 + NOLOHH_24510 0.20 +2.7 46,393 - NOLOHH_24510 0.27 +1.1 46,521 + NOLOHH_24510 0.38 -3.5 46,809 + NOLOHH_24510 0.64 +1.4 46,810 - NOLOHH_24510 0.64 +0.6 46,872 + NOLOHH_24510 0.69 +1.2 47,216 + +0.4 47,414 + NOLOHH_24515 0.23 -1.4 47,607 - NOLOHH_24515 0.46 -0.8 48,150 + +2.9 48,811 - +2.0
Or see this region's nucleotide sequence