Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt djlB and ybeR overlap by 4 nucleotides ybeR and ybeQ are separated by 163 nucleotides
NOLOHH_23685: djlB - Uncharacterized J domain-containing protein DjlB, at 4,661,079 to 4,662,506
djlB
NOLOHH_23690: ybeR - Uncharacterized protein YbeR, at 4,662,503 to 4,663,210
ybeR
NOLOHH_23695: ybeQ - Sel1-repeat-containing protein YbeQ, at 4,663,374 to 4,664,351
ybeQ
Position (kb)
4662
4663
4664 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4661.536 kb on + strand, within djlB at 4661.537 kb on - strand, within djlB at 4661.537 kb on - strand, within djlB at 4661.595 kb on + strand, within djlB at 4661.605 kb on + strand, within djlB at 4661.719 kb on + strand, within djlB at 4661.741 kb on - strand, within djlB at 4661.830 kb on + strand, within djlB at 4661.900 kb on - strand, within djlB at 4661.900 kb on - strand, within djlB at 4661.900 kb on - strand, within djlB at 4662.037 kb on - strand, within djlB at 4662.112 kb on - strand, within djlB at 4662.112 kb on - strand, within djlB at 4662.132 kb on + strand, within djlB at 4662.132 kb on + strand, within djlB at 4662.132 kb on + strand, within djlB at 4662.186 kb on - strand, within djlB at 4662.186 kb on - strand, within djlB at 4662.203 kb on - strand, within djlB at 4662.303 kb on + strand, within djlB at 4662.546 kb on + strand at 4662.603 kb on - strand, within ybeR at 4662.818 kb on - strand, within ybeR at 4662.822 kb on - strand, within ybeR at 4662.952 kb on - strand, within ybeR at 4663.478 kb on + strand, within ybeQ at 4663.569 kb on + strand, within ybeQ at 4663.576 kb on + strand, within ybeQ at 4663.587 kb on + strand, within ybeQ at 4663.654 kb on + strand, within ybeQ at 4663.664 kb on + strand, within ybeQ at 4663.664 kb on + strand, within ybeQ at 4663.665 kb on - strand, within ybeQ at 4663.721 kb on + strand, within ybeQ at 4663.797 kb on + strand, within ybeQ at 4663.798 kb on - strand, within ybeQ at 4663.828 kb on - strand, within ybeQ at 4663.864 kb on + strand, within ybeQ at 4663.864 kb on + strand, within ybeQ at 4663.864 kb on + strand, within ybeQ at 4663.865 kb on - strand, within ybeQ at 4663.906 kb on - strand, within ybeQ at 4664.013 kb on + strand, within ybeQ at 4664.013 kb on + strand, within ybeQ at 4664.014 kb on - strand, within ybeQ at 4664.015 kb on + strand, within ybeQ at 4664.043 kb on + strand, within ybeQ at 4664.044 kb on - strand, within ybeQ at 4664.044 kb on - strand, within ybeQ at 4664.045 kb on + strand, within ybeQ at 4664.045 kb on + strand, within ybeQ at 4664.045 kb on + strand, within ybeQ at 4664.045 kb on + strand, within ybeQ at 4664.046 kb on - strand, within ybeQ at 4664.058 kb on + strand, within ybeQ at 4664.059 kb on - strand, within ybeQ at 4664.064 kb on + strand, within ybeQ at 4664.065 kb on - strand, within ybeQ at 4664.100 kb on + strand, within ybeQ at 4664.101 kb on - strand, within ybeQ at 4664.115 kb on + strand, within ybeQ at 4664.115 kb on + strand, within ybeQ at 4664.115 kb on + strand, within ybeQ at 4664.117 kb on + strand, within ybeQ at 4664.117 kb on + strand, within ybeQ at 4664.117 kb on + strand, within ybeQ at 4664.117 kb on + strand, within ybeQ at 4664.117 kb on + strand, within ybeQ at 4664.117 kb on + strand, within ybeQ at 4664.117 kb on + strand, within ybeQ at 4664.118 kb on - strand, within ybeQ at 4664.121 kb on + strand, within ybeQ at 4664.121 kb on + strand, within ybeQ at 4664.121 kb on + strand, within ybeQ at 4664.121 kb on + strand, within ybeQ at 4664.121 kb on + strand, within ybeQ at 4664.121 kb on + strand, within ybeQ at 4664.121 kb on + strand, within ybeQ at 4664.121 kb on + strand, within ybeQ at 4664.122 kb on - strand, within ybeQ at 4664.122 kb on - strand, within ybeQ at 4664.123 kb on + strand, within ybeQ at 4664.124 kb on - strand, within ybeQ at 4664.124 kb on - strand, within ybeQ
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 4,661,536 + djlB NOLOHH_23685 0.32 -0.1 4,661,537 - djlB NOLOHH_23685 0.32 +0.2 4,661,537 - djlB NOLOHH_23685 0.32 -0.4 4,661,595 + djlB NOLOHH_23685 0.36 -0.8 4,661,605 + djlB NOLOHH_23685 0.37 -0.1 4,661,719 + djlB NOLOHH_23685 0.45 -0.7 4,661,741 - djlB NOLOHH_23685 0.46 +0.7 4,661,830 + djlB NOLOHH_23685 0.53 -1.9 4,661,900 - djlB NOLOHH_23685 0.57 +0.6 4,661,900 - djlB NOLOHH_23685 0.57 -0.1 4,661,900 - djlB NOLOHH_23685 0.57 -1.5 4,662,037 - djlB NOLOHH_23685 0.67 +0.2 4,662,112 - djlB NOLOHH_23685 0.72 -1.9 4,662,112 - djlB NOLOHH_23685 0.72 -0.8 4,662,132 + djlB NOLOHH_23685 0.74 -0.6 4,662,132 + djlB NOLOHH_23685 0.74 -0.6 4,662,132 + djlB NOLOHH_23685 0.74 +0.3 4,662,186 - djlB NOLOHH_23685 0.78 +0.1 4,662,186 - djlB NOLOHH_23685 0.78 +1.3 4,662,203 - djlB NOLOHH_23685 0.79 +1.0 4,662,303 + djlB NOLOHH_23685 0.86 -0.5 4,662,546 + -0.5 4,662,603 - ybeR NOLOHH_23690 0.14 -1.1 4,662,818 - ybeR NOLOHH_23690 0.44 -0.0 4,662,822 - ybeR NOLOHH_23690 0.45 -2.9 4,662,952 - ybeR NOLOHH_23690 0.63 -1.6 4,663,478 + ybeQ NOLOHH_23695 0.11 +0.1 4,663,569 + ybeQ NOLOHH_23695 0.20 +0.1 4,663,576 + ybeQ NOLOHH_23695 0.21 -0.7 4,663,587 + ybeQ NOLOHH_23695 0.22 +0.2 4,663,654 + ybeQ NOLOHH_23695 0.29 -0.2 4,663,664 + ybeQ NOLOHH_23695 0.30 -0.0 4,663,664 + ybeQ NOLOHH_23695 0.30 -0.1 4,663,665 - ybeQ NOLOHH_23695 0.30 -0.3 4,663,721 + ybeQ NOLOHH_23695 0.35 +0.5 4,663,797 + ybeQ NOLOHH_23695 0.43 -0.8 4,663,798 - ybeQ NOLOHH_23695 0.43 -3.9 4,663,828 - ybeQ NOLOHH_23695 0.46 +0.6 4,663,864 + ybeQ NOLOHH_23695 0.50 -0.3 4,663,864 + ybeQ NOLOHH_23695 0.50 +0.3 4,663,864 + ybeQ NOLOHH_23695 0.50 -1.7 4,663,865 - ybeQ NOLOHH_23695 0.50 -0.0 4,663,906 - ybeQ NOLOHH_23695 0.54 +0.3 4,664,013 + ybeQ NOLOHH_23695 0.65 +0.4 4,664,013 + ybeQ NOLOHH_23695 0.65 -0.8 4,664,014 - ybeQ NOLOHH_23695 0.65 -0.8 4,664,015 + ybeQ NOLOHH_23695 0.66 +0.3 4,664,043 + ybeQ NOLOHH_23695 0.68 +0.0 4,664,044 - ybeQ NOLOHH_23695 0.69 +0.8 4,664,044 - ybeQ NOLOHH_23695 0.69 +0.9 4,664,045 + ybeQ NOLOHH_23695 0.69 +0.7 4,664,045 + ybeQ NOLOHH_23695 0.69 -0.5 4,664,045 + ybeQ NOLOHH_23695 0.69 +0.9 4,664,045 + ybeQ NOLOHH_23695 0.69 +0.9 4,664,046 - ybeQ NOLOHH_23695 0.69 +0.6 4,664,058 + ybeQ NOLOHH_23695 0.70 -1.2 4,664,059 - ybeQ NOLOHH_23695 0.70 -0.1 4,664,064 + ybeQ NOLOHH_23695 0.71 +1.1 4,664,065 - ybeQ NOLOHH_23695 0.71 -0.3 4,664,100 + ybeQ NOLOHH_23695 0.74 -1.1 4,664,101 - ybeQ NOLOHH_23695 0.74 +0.1 4,664,115 + ybeQ NOLOHH_23695 0.76 -1.5 4,664,115 + ybeQ NOLOHH_23695 0.76 +0.6 4,664,115 + ybeQ NOLOHH_23695 0.76 -0.3 4,664,117 + ybeQ NOLOHH_23695 0.76 +0.2 4,664,117 + ybeQ NOLOHH_23695 0.76 -0.6 4,664,117 + ybeQ NOLOHH_23695 0.76 +0.8 4,664,117 + ybeQ NOLOHH_23695 0.76 -0.8 4,664,117 + ybeQ NOLOHH_23695 0.76 +0.7 4,664,117 + ybeQ NOLOHH_23695 0.76 -2.5 4,664,117 + ybeQ NOLOHH_23695 0.76 +0.4 4,664,118 - ybeQ NOLOHH_23695 0.76 +0.7 4,664,121 + ybeQ NOLOHH_23695 0.76 +0.5 4,664,121 + ybeQ NOLOHH_23695 0.76 -1.8 4,664,121 + ybeQ NOLOHH_23695 0.76 +0.9 4,664,121 + ybeQ NOLOHH_23695 0.76 -0.3 4,664,121 + ybeQ NOLOHH_23695 0.76 +0.2 4,664,121 + ybeQ NOLOHH_23695 0.76 -1.4 4,664,121 + ybeQ NOLOHH_23695 0.76 +0.9 4,664,121 + ybeQ NOLOHH_23695 0.76 -0.1 4,664,122 - ybeQ NOLOHH_23695 0.76 -0.1 4,664,122 - ybeQ NOLOHH_23695 0.76 +0.4 4,664,123 + ybeQ NOLOHH_23695 0.77 +0.4 4,664,124 - ybeQ NOLOHH_23695 0.77 +0.5 4,664,124 - ybeQ NOLOHH_23695 0.77 +0.2
Or see this region's nucleotide sequence