Strain Fitness in Escherichia coli ECOR27 around NOLOHH_23690

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdjlB and ybeR overlap by 4 nucleotidesybeR and ybeQ are separated by 163 nucleotides NOLOHH_23685: djlB - Uncharacterized J domain-containing protein DjlB, at 4,661,079 to 4,662,506 djlB NOLOHH_23690: ybeR - Uncharacterized protein YbeR, at 4,662,503 to 4,663,210 ybeR NOLOHH_23695: ybeQ - Sel1-repeat-containing protein YbeQ, at 4,663,374 to 4,664,351 ybeQ Position (kb) 4662 4663 4664Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4661.536 kb on + strand, within djlBat 4661.537 kb on - strand, within djlBat 4661.537 kb on - strand, within djlBat 4661.595 kb on + strand, within djlBat 4661.605 kb on + strand, within djlBat 4661.719 kb on + strand, within djlBat 4661.741 kb on - strand, within djlBat 4661.830 kb on + strand, within djlBat 4661.900 kb on - strand, within djlBat 4661.900 kb on - strand, within djlBat 4661.900 kb on - strand, within djlBat 4662.037 kb on - strand, within djlBat 4662.112 kb on - strand, within djlBat 4662.112 kb on - strand, within djlBat 4662.132 kb on + strand, within djlBat 4662.132 kb on + strand, within djlBat 4662.132 kb on + strand, within djlBat 4662.186 kb on - strand, within djlBat 4662.186 kb on - strand, within djlBat 4662.203 kb on - strand, within djlBat 4662.303 kb on + strand, within djlBat 4662.546 kb on + strandat 4662.603 kb on - strand, within ybeRat 4662.818 kb on - strand, within ybeRat 4662.822 kb on - strand, within ybeRat 4662.952 kb on - strand, within ybeRat 4663.478 kb on + strand, within ybeQat 4663.569 kb on + strand, within ybeQat 4663.576 kb on + strand, within ybeQat 4663.587 kb on + strand, within ybeQat 4663.654 kb on + strand, within ybeQat 4663.664 kb on + strand, within ybeQat 4663.664 kb on + strand, within ybeQat 4663.665 kb on - strand, within ybeQat 4663.721 kb on + strand, within ybeQat 4663.797 kb on + strand, within ybeQat 4663.798 kb on - strand, within ybeQat 4663.828 kb on - strand, within ybeQat 4663.864 kb on + strand, within ybeQat 4663.864 kb on + strand, within ybeQat 4663.864 kb on + strand, within ybeQat 4663.865 kb on - strand, within ybeQat 4663.906 kb on - strand, within ybeQat 4664.013 kb on + strand, within ybeQat 4664.013 kb on + strand, within ybeQat 4664.014 kb on - strand, within ybeQat 4664.015 kb on + strand, within ybeQat 4664.043 kb on + strand, within ybeQat 4664.044 kb on - strand, within ybeQat 4664.044 kb on - strand, within ybeQat 4664.045 kb on + strand, within ybeQat 4664.045 kb on + strand, within ybeQat 4664.045 kb on + strand, within ybeQat 4664.045 kb on + strand, within ybeQat 4664.046 kb on - strand, within ybeQat 4664.058 kb on + strand, within ybeQat 4664.059 kb on - strand, within ybeQat 4664.064 kb on + strand, within ybeQat 4664.065 kb on - strand, within ybeQat 4664.100 kb on + strand, within ybeQat 4664.101 kb on - strand, within ybeQat 4664.115 kb on + strand, within ybeQat 4664.115 kb on + strand, within ybeQat 4664.115 kb on + strand, within ybeQat 4664.117 kb on + strand, within ybeQat 4664.117 kb on + strand, within ybeQat 4664.117 kb on + strand, within ybeQat 4664.117 kb on + strand, within ybeQat 4664.117 kb on + strand, within ybeQat 4664.117 kb on + strand, within ybeQat 4664.117 kb on + strand, within ybeQat 4664.118 kb on - strand, within ybeQat 4664.121 kb on + strand, within ybeQat 4664.121 kb on + strand, within ybeQat 4664.121 kb on + strand, within ybeQat 4664.121 kb on + strand, within ybeQat 4664.121 kb on + strand, within ybeQat 4664.121 kb on + strand, within ybeQat 4664.121 kb on + strand, within ybeQat 4664.121 kb on + strand, within ybeQat 4664.122 kb on - strand, within ybeQat 4664.122 kb on - strand, within ybeQat 4664.123 kb on + strand, within ybeQat 4664.124 kb on - strand, within ybeQat 4664.124 kb on - strand, within ybeQ

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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4,661,536 + djlB NOLOHH_23685 0.32 -0.1
4,661,537 - djlB NOLOHH_23685 0.32 +0.2
4,661,537 - djlB NOLOHH_23685 0.32 -0.4
4,661,595 + djlB NOLOHH_23685 0.36 -0.8
4,661,605 + djlB NOLOHH_23685 0.37 -0.1
4,661,719 + djlB NOLOHH_23685 0.45 -0.7
4,661,741 - djlB NOLOHH_23685 0.46 +0.7
4,661,830 + djlB NOLOHH_23685 0.53 -1.9
4,661,900 - djlB NOLOHH_23685 0.57 +0.6
4,661,900 - djlB NOLOHH_23685 0.57 -0.1
4,661,900 - djlB NOLOHH_23685 0.57 -1.5
4,662,037 - djlB NOLOHH_23685 0.67 +0.2
4,662,112 - djlB NOLOHH_23685 0.72 -1.9
4,662,112 - djlB NOLOHH_23685 0.72 -0.8
4,662,132 + djlB NOLOHH_23685 0.74 -0.6
4,662,132 + djlB NOLOHH_23685 0.74 -0.6
4,662,132 + djlB NOLOHH_23685 0.74 +0.3
4,662,186 - djlB NOLOHH_23685 0.78 +0.1
4,662,186 - djlB NOLOHH_23685 0.78 +1.3
4,662,203 - djlB NOLOHH_23685 0.79 +1.0
4,662,303 + djlB NOLOHH_23685 0.86 -0.5
4,662,546 + -0.5
4,662,603 - ybeR NOLOHH_23690 0.14 -1.1
4,662,818 - ybeR NOLOHH_23690 0.44 -0.0
4,662,822 - ybeR NOLOHH_23690 0.45 -2.9
4,662,952 - ybeR NOLOHH_23690 0.63 -1.6
4,663,478 + ybeQ NOLOHH_23695 0.11 +0.1
4,663,569 + ybeQ NOLOHH_23695 0.20 +0.1
4,663,576 + ybeQ NOLOHH_23695 0.21 -0.7
4,663,587 + ybeQ NOLOHH_23695 0.22 +0.2
4,663,654 + ybeQ NOLOHH_23695 0.29 -0.2
4,663,664 + ybeQ NOLOHH_23695 0.30 -0.0
4,663,664 + ybeQ NOLOHH_23695 0.30 -0.1
4,663,665 - ybeQ NOLOHH_23695 0.30 -0.3
4,663,721 + ybeQ NOLOHH_23695 0.35 +0.5
4,663,797 + ybeQ NOLOHH_23695 0.43 -0.8
4,663,798 - ybeQ NOLOHH_23695 0.43 -3.9
4,663,828 - ybeQ NOLOHH_23695 0.46 +0.6
4,663,864 + ybeQ NOLOHH_23695 0.50 -0.3
4,663,864 + ybeQ NOLOHH_23695 0.50 +0.3
4,663,864 + ybeQ NOLOHH_23695 0.50 -1.7
4,663,865 - ybeQ NOLOHH_23695 0.50 -0.0
4,663,906 - ybeQ NOLOHH_23695 0.54 +0.3
4,664,013 + ybeQ NOLOHH_23695 0.65 +0.4
4,664,013 + ybeQ NOLOHH_23695 0.65 -0.8
4,664,014 - ybeQ NOLOHH_23695 0.65 -0.8
4,664,015 + ybeQ NOLOHH_23695 0.66 +0.3
4,664,043 + ybeQ NOLOHH_23695 0.68 +0.0
4,664,044 - ybeQ NOLOHH_23695 0.69 +0.8
4,664,044 - ybeQ NOLOHH_23695 0.69 +0.9
4,664,045 + ybeQ NOLOHH_23695 0.69 +0.7
4,664,045 + ybeQ NOLOHH_23695 0.69 -0.5
4,664,045 + ybeQ NOLOHH_23695 0.69 +0.9
4,664,045 + ybeQ NOLOHH_23695 0.69 +0.9
4,664,046 - ybeQ NOLOHH_23695 0.69 +0.6
4,664,058 + ybeQ NOLOHH_23695 0.70 -1.2
4,664,059 - ybeQ NOLOHH_23695 0.70 -0.1
4,664,064 + ybeQ NOLOHH_23695 0.71 +1.1
4,664,065 - ybeQ NOLOHH_23695 0.71 -0.3
4,664,100 + ybeQ NOLOHH_23695 0.74 -1.1
4,664,101 - ybeQ NOLOHH_23695 0.74 +0.1
4,664,115 + ybeQ NOLOHH_23695 0.76 -1.5
4,664,115 + ybeQ NOLOHH_23695 0.76 +0.6
4,664,115 + ybeQ NOLOHH_23695 0.76 -0.3
4,664,117 + ybeQ NOLOHH_23695 0.76 +0.2
4,664,117 + ybeQ NOLOHH_23695 0.76 -0.6
4,664,117 + ybeQ NOLOHH_23695 0.76 +0.8
4,664,117 + ybeQ NOLOHH_23695 0.76 -0.8
4,664,117 + ybeQ NOLOHH_23695 0.76 +0.7
4,664,117 + ybeQ NOLOHH_23695 0.76 -2.5
4,664,117 + ybeQ NOLOHH_23695 0.76 +0.4
4,664,118 - ybeQ NOLOHH_23695 0.76 +0.7
4,664,121 + ybeQ NOLOHH_23695 0.76 +0.5
4,664,121 + ybeQ NOLOHH_23695 0.76 -1.8
4,664,121 + ybeQ NOLOHH_23695 0.76 +0.9
4,664,121 + ybeQ NOLOHH_23695 0.76 -0.3
4,664,121 + ybeQ NOLOHH_23695 0.76 +0.2
4,664,121 + ybeQ NOLOHH_23695 0.76 -1.4
4,664,121 + ybeQ NOLOHH_23695 0.76 +0.9
4,664,121 + ybeQ NOLOHH_23695 0.76 -0.1
4,664,122 - ybeQ NOLOHH_23695 0.76 -0.1
4,664,122 - ybeQ NOLOHH_23695 0.76 +0.4
4,664,123 + ybeQ NOLOHH_23695 0.77 +0.4
4,664,124 - ybeQ NOLOHH_23695 0.77 +0.5
4,664,124 - ybeQ NOLOHH_23695 0.77 +0.2

Or see this region's nucleotide sequence