Strain Fitness in Escherichia coli ECOR27 around NOLOHH_23335

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
4,587,680	+	sdhA	NOLOHH_23325	0.65	-2.8
4,587,681	-	sdhA	NOLOHH_23325	0.65	-3.4
4,587,684	+	sdhA	NOLOHH_23325	0.65	+1.8
4,587,732	-	sdhA	NOLOHH_23325	0.68	-4.7
4,587,963	-	sdhA	NOLOHH_23325	0.81	-0.5
4,587,963	-	sdhA	NOLOHH_23325	0.81	-3.2
4,587,967	-	sdhA	NOLOHH_23325	0.81	-2.5
4,587,967	-	sdhA	NOLOHH_23325	0.81	-1.9
4,588,038	+	sdhA	NOLOHH_23325	0.85	-4.3
4,588,045	-	sdhA	NOLOHH_23325	0.85	-0.8
4,588,045	-	sdhA	NOLOHH_23325	0.85	-4.4
4,588,047	-	sdhA	NOLOHH_23325	0.85	-4.0
4,588,047	-	sdhA	NOLOHH_23325	0.85	-2.5
4,588,047	-	sdhA	NOLOHH_23325	0.85	-0.2
4,588,047	-	sdhA	NOLOHH_23325	0.85	-2.2
4,588,047	-	sdhA	NOLOHH_23325	0.85	-4.1
4,588,072	-	sdhA	NOLOHH_23325	0.87	-4.7
4,588,074	-	sdhA	NOLOHH_23325	0.87	-2.8
4,588,097	+	sdhA	NOLOHH_23325	0.88	-2.5
4,588,098	-	sdhA	NOLOHH_23325	0.88	-3.1
4,588,098	-	sdhA	NOLOHH_23325	0.88	-3.8
4,588,098	-	sdhA	NOLOHH_23325	0.88	-3.3
4,588,098	-	sdhA	NOLOHH_23325	0.88	-1.2
4,588,101	+	sdhA	NOLOHH_23325	0.88	-1.0
4,588,102	-	sdhA	NOLOHH_23325	0.88	-3.7
4,588,102	-	sdhA	NOLOHH_23325	0.88	-3.5
4,588,102	-	sdhA	NOLOHH_23325	0.88	-2.7
4,588,102	-	sdhA	NOLOHH_23325	0.88	+0.1
4,588,117	-	sdhA	NOLOHH_23325	0.89	-2.7
4,588,129	-				-4.7
4,588,249	-				-2.9
4,588,334	-				-1.9
4,588,334	-				-1.8
4,588,406	-	sdhD	NOLOHH_23330	0.29	-0.8
4,588,406	-	sdhD	NOLOHH_23330	0.29	-3.6
4,588,519	+	sdhD	NOLOHH_23330	0.61	-2.5
4,588,520	-	sdhD	NOLOHH_23330	0.62	-1.3
4,588,520	-	sdhD	NOLOHH_23330	0.62	-1.6
4,588,520	-	sdhD	NOLOHH_23330	0.62	-1.1
4,588,520	-	sdhD	NOLOHH_23330	0.62	-1.4
4,588,557	-	sdhD	NOLOHH_23330	0.72	-3.4
4,588,557	-	sdhD	NOLOHH_23330	0.72	-1.9
4,588,557	-	sdhD	NOLOHH_23330	0.72	-0.2
4,588,558	+	sdhD	NOLOHH_23330	0.73	-3.3
4,588,559	-	sdhD	NOLOHH_23330	0.73	-2.9
4,588,559	-	sdhD	NOLOHH_23330	0.73	-0.7
4,588,559	-	sdhD	NOLOHH_23330	0.73	-2.1
4,588,559	-	sdhD	NOLOHH_23330	0.73	-4.1
4,588,559	-	sdhD	NOLOHH_23330	0.73	-4.3
4,588,567	+	sdhD	NOLOHH_23330	0.75	-1.7
4,588,568	-	sdhD	NOLOHH_23330	0.76	-2.6
4,588,568	-	sdhD	NOLOHH_23330	0.76	-1.5
4,588,568	-	sdhD	NOLOHH_23330	0.76	-3.7
4,588,568	-	sdhD	NOLOHH_23330	0.76	-2.1
4,588,614	+	sdhD	NOLOHH_23330	0.89	-2.0
4,588,648	-				+1.8
4,588,771	+	sdhC	NOLOHH_23335	0.31	-1.1
4,588,772	-	sdhC	NOLOHH_23335	0.31	-1.7
4,588,776	-	sdhC	NOLOHH_23335	0.32	-3.2
4,588,776	-	sdhC	NOLOHH_23335	0.32	-3.8
4,588,776	-	sdhC	NOLOHH_23335	0.32	-3.9
4,589,059	+				-2.9
4,589,060	-				-2.6
4,589,164	-				-3.3
4,589,214	+				-3.8
4,589,215	-				-2.2
4,589,304	-				-0.7
4,589,305	+				-4.7
4,589,429	+				+0.2
4,589,700	-				-0.5
4,589,715	+				-1.8
4,589,720	-				-0.4
4,589,741	+				+0.3
4,589,920	+	gltA	NOLOHH_23345	0.14	-1.5
4,589,986	+	gltA	NOLOHH_23345	0.19	-1.5
4,589,991	-	gltA	NOLOHH_23345	0.19	-0.7
4,589,991	-	gltA	NOLOHH_23345	0.19	-2.9
4,590,005	+	gltA	NOLOHH_23345	0.20	+0.7
4,590,005	+	gltA	NOLOHH_23345	0.20	+1.6
4,590,005	+	gltA	NOLOHH_23345	0.20	+1.9
4,590,044	+	gltA	NOLOHH_23345	0.23	-1.4
4,590,044	+	gltA	NOLOHH_23345	0.23	-1.0