Strain Fitness in Escherichia coli ECOR27 around NOLOHH_20870

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbluF and bluR are separated by 204 nucleotidesbluR and ycgX are separated by 220 nucleotides NOLOHH_20865: bluF - blue light-responsive regulator BluF, at 4,103,693 to 4,104,904 bluF NOLOHH_20870: bluR - DNA-binding transcriptional repressor BluR, at 4,105,109 to 4,105,840 bluR NOLOHH_20875: ycgX - Uncharacterized protein YcgX, at 4,106,061 to 4,106,465 ycgX Position (kb) 4105 4106Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4105.017 kb on + strandat 4105.017 kb on + strandat 4105.060 kb on + strandat 4105.118 kb on + strandat 4105.153 kb on + strandat 4105.248 kb on + strand, within bluRat 4105.248 kb on + strand, within bluRat 4105.278 kb on + strand, within bluRat 4105.282 kb on + strand, within bluRat 4105.282 kb on + strand, within bluRat 4105.314 kb on + strand, within bluRat 4105.528 kb on + strand, within bluRat 4105.545 kb on + strand, within bluRat 4105.875 kb on - strandat 4105.968 kb on - strandat 4106.041 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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4,105,017 + -0.8
4,105,017 + +0.8
4,105,060 + +0.4
4,105,118 + -0.8
4,105,153 + -0.3
4,105,248 + bluR NOLOHH_20870 0.19 -0.0
4,105,248 + bluR NOLOHH_20870 0.19 -1.9
4,105,278 + bluR NOLOHH_20870 0.23 +0.1
4,105,282 + bluR NOLOHH_20870 0.24 -2.6
4,105,282 + bluR NOLOHH_20870 0.24 -0.8
4,105,314 + bluR NOLOHH_20870 0.28 -1.8
4,105,528 + bluR NOLOHH_20870 0.57 -1.2
4,105,545 + bluR NOLOHH_20870 0.60 -3.4
4,105,875 - +1.8
4,105,968 - -0.7
4,106,041 - +0.5

Or see this region's nucleotide sequence