Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17785

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsufB and sufC are separated by 9 nucleotidessufC and sufD overlap by 26 nucleotidessufD and sufS overlap by 4 nucleotides NOLOHH_17775: sufB - Fe-S cluster assembly protein SufB, at 3,489,209 to 3,490,696 sufB NOLOHH_17780: sufC - Fe-S cluster assembly ATPase SufC, at 3,490,706 to 3,491,452 sufC NOLOHH_17785: sufD - Fe-S cluster assembly protein SufD, at 3,491,427 to 3,492,698 sufD NOLOHH_17790: sufS - cysteine desulfurase SufS, at 3,492,695 to 3,493,915 sufS Position (kb) 3491 3492 3493Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3490.470 kb on - strand, within sufBat 3490.525 kb on + strand, within sufBat 3490.828 kb on + strand, within sufCat 3491.014 kb on + strand, within sufCat 3491.348 kb on + strand, within sufCat 3491.348 kb on + strand, within sufCat 3491.361 kb on + strand, within sufCat 3491.632 kb on + strand, within sufDat 3491.887 kb on + strand, within sufDat 3492.546 kb on + strand, within sufDat 3492.877 kb on - strand, within sufSat 3493.369 kb on + strand, within sufSat 3493.403 kb on + strand, within sufSat 3493.571 kb on + strand, within sufSat 3493.594 kb on + strand, within sufS

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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3,490,470 - sufB NOLOHH_17775 0.85 -0.4
3,490,525 + sufB NOLOHH_17775 0.88 -1.5
3,490,828 + sufC NOLOHH_17780 0.16 +0.5
3,491,014 + sufC NOLOHH_17780 0.41 +3.1
3,491,348 + sufC NOLOHH_17780 0.86 -1.2
3,491,348 + sufC NOLOHH_17780 0.86 -0.5
3,491,361 + sufC NOLOHH_17780 0.88 +0.3
3,491,632 + sufD NOLOHH_17785 0.16 -1.6
3,491,887 + sufD NOLOHH_17785 0.36 -2.5
3,492,546 + sufD NOLOHH_17785 0.88 -1.0
3,492,877 - sufS NOLOHH_17790 0.15 -0.9
3,493,369 + sufS NOLOHH_17790 0.55 +0.8
3,493,403 + sufS NOLOHH_17790 0.58 -1.0
3,493,571 + sufS NOLOHH_17790 0.72 -2.7
3,493,594 + sufS NOLOHH_17790 0.74 +1.1

Or see this region's nucleotide sequence