Strain Fitness in Escherichia coli ECOR27 around NOLOHH_16470

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpgsA and Gly_trna are separated by 151 nucleotidesGly_trna and Cys_trna are separated by 54 nucleotidesCys_trna and Leu_trna are separated by 12 nucleotidesLeu_trna and yecA are separated by 195 nucleotidesyecA and tyrP are separated by 61 nucleotides NOLOHH_16450: pgsA - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 3,238,483 to 3,239,031 pgsA NOLOHH_16455: Gly_trna - tRNA-Gly(gcc), at 3,239,183 to 3,239,258 _trna NOLOHH_16460: Cys_trna - tRNA-Cys(gca), at 3,239,313 to 3,239,386 _trna NOLOHH_16465: Leu_trna - tRNA-Leu(taa), at 3,239,399 to 3,239,485 _trna NOLOHH_16470: yecA - UPF0149 family protein YecA, at 3,239,681 to 3,240,346 yecA NOLOHH_16475: tyrP - tyrosine transporter TyrP, at 3,240,408 to 3,241,619 tyrP Position (kb) 3239 3240 3241Strain fitness (log2 ratio) -2 -1 0 1at 3239.640 kb on - strandat 3240.042 kb on - strand, within yecAat 3240.183 kb on + strand, within yecAat 3240.213 kb on + strand, within yecAat 3240.213 kb on + strand, within yecAat 3240.344 kb on + strandat 3240.344 kb on + strandat 3240.401 kb on + strandat 3240.468 kb on - strandat 3240.669 kb on - strand, within tyrPat 3240.702 kb on - strand, within tyrPat 3240.739 kb on - strand, within tyrPat 3240.856 kb on - strand, within tyrPat 3240.933 kb on - strand, within tyrPat 3240.933 kb on - strand, within tyrPat 3240.979 kb on - strand, within tyrPat 3240.979 kb on - strand, within tyrPat 3241.004 kb on - strand, within tyrPat 3241.004 kb on - strand, within tyrPat 3241.004 kb on - strand, within tyrPat 3241.004 kb on - strand, within tyrPat 3241.004 kb on - strand, within tyrPat 3241.004 kb on - strand, within tyrPat 3241.004 kb on - strand, within tyrPat 3241.099 kb on - strand, within tyrPat 3241.144 kb on - strand, within tyrPat 3241.189 kb on - strand, within tyrPat 3241.269 kb on - strand, within tyrPat 3241.275 kb on - strand, within tyrPat 3241.275 kb on - strand, within tyrPat 3241.275 kb on - strand, within tyrPat 3241.328 kb on - strand, within tyrPat 3241.328 kb on - strand, within tyrPat 3241.328 kb on - strand, within tyrPat 3241.346 kb on - strand, within tyrPat 3241.346 kb on - strand, within tyrP

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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3,239,640 - -1.3
3,240,042 - yecA NOLOHH_16470 0.54 -1.2
3,240,183 + yecA NOLOHH_16470 0.75 -1.1
3,240,213 + yecA NOLOHH_16470 0.80 -1.5
3,240,213 + yecA NOLOHH_16470 0.80 -0.6
3,240,344 + -0.4
3,240,344 + +0.6
3,240,401 + -1.3
3,240,468 - -0.5
3,240,669 - tyrP NOLOHH_16475 0.22 -0.1
3,240,702 - tyrP NOLOHH_16475 0.24 +0.7
3,240,739 - tyrP NOLOHH_16475 0.27 +0.1
3,240,856 - tyrP NOLOHH_16475 0.37 -1.4
3,240,933 - tyrP NOLOHH_16475 0.43 -0.5
3,240,933 - tyrP NOLOHH_16475 0.43 -0.2
3,240,979 - tyrP NOLOHH_16475 0.47 -0.1
3,240,979 - tyrP NOLOHH_16475 0.47 +0.2
3,241,004 - tyrP NOLOHH_16475 0.49 +0.2
3,241,004 - tyrP NOLOHH_16475 0.49 -0.4
3,241,004 - tyrP NOLOHH_16475 0.49 +0.4
3,241,004 - tyrP NOLOHH_16475 0.49 +0.1
3,241,004 - tyrP NOLOHH_16475 0.49 -1.9
3,241,004 - tyrP NOLOHH_16475 0.49 +0.5
3,241,004 - tyrP NOLOHH_16475 0.49 +1.2
3,241,099 - tyrP NOLOHH_16475 0.57 +0.9
3,241,144 - tyrP NOLOHH_16475 0.61 +0.2
3,241,189 - tyrP NOLOHH_16475 0.64 -0.0
3,241,269 - tyrP NOLOHH_16475 0.71 +0.5
3,241,275 - tyrP NOLOHH_16475 0.72 -0.1
3,241,275 - tyrP NOLOHH_16475 0.72 -2.4
3,241,275 - tyrP NOLOHH_16475 0.72 -0.7
3,241,328 - tyrP NOLOHH_16475 0.76 +0.5
3,241,328 - tyrP NOLOHH_16475 0.76 -1.5
3,241,328 - tyrP NOLOHH_16475 0.76 -1.9
3,241,346 - tyrP NOLOHH_16475 0.77 -0.5
3,241,346 - tyrP NOLOHH_16475 0.77 +0.3

Or see this region's nucleotide sequence