Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pgsA and Gly_trna are separated by 151 nucleotides Gly_trna and Cys_trna are separated by 54 nucleotides Cys_trna and Leu_trna are separated by 12 nucleotides Leu_trna and yecA are separated by 195 nucleotides yecA and tyrP are separated by 61 nucleotides
NOLOHH_16450: pgsA - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 3,238,483 to 3,239,031
pgsA
NOLOHH_16455: Gly_trna - tRNA-Gly(gcc), at 3,239,183 to 3,239,258
_trna
NOLOHH_16460: Cys_trna - tRNA-Cys(gca), at 3,239,313 to 3,239,386
_trna
NOLOHH_16465: Leu_trna - tRNA-Leu(taa), at 3,239,399 to 3,239,485
_trna
NOLOHH_16470: yecA - UPF0149 family protein YecA, at 3,239,681 to 3,240,346
yecA
NOLOHH_16475: tyrP - tyrosine transporter TyrP, at 3,240,408 to 3,241,619
tyrP
Position (kb)
3239
3240
3241 Strain fitness (log2 ratio)
-2
-1
0
1 at 3239.640 kb on - strand at 3240.042 kb on - strand, within yecA at 3240.183 kb on + strand, within yecA at 3240.213 kb on + strand, within yecA at 3240.213 kb on + strand, within yecA at 3240.344 kb on + strand at 3240.344 kb on + strand at 3240.401 kb on + strand at 3240.468 kb on - strand at 3240.669 kb on - strand, within tyrP at 3240.702 kb on - strand, within tyrP at 3240.739 kb on - strand, within tyrP at 3240.856 kb on - strand, within tyrP at 3240.933 kb on - strand, within tyrP at 3240.933 kb on - strand, within tyrP at 3240.979 kb on - strand, within tyrP at 3240.979 kb on - strand, within tyrP at 3241.004 kb on - strand, within tyrP at 3241.004 kb on - strand, within tyrP at 3241.004 kb on - strand, within tyrP at 3241.004 kb on - strand, within tyrP at 3241.004 kb on - strand, within tyrP at 3241.004 kb on - strand, within tyrP at 3241.004 kb on - strand, within tyrP at 3241.099 kb on - strand, within tyrP at 3241.144 kb on - strand, within tyrP at 3241.189 kb on - strand, within tyrP at 3241.269 kb on - strand, within tyrP at 3241.275 kb on - strand, within tyrP at 3241.275 kb on - strand, within tyrP at 3241.275 kb on - strand, within tyrP at 3241.328 kb on - strand, within tyrP at 3241.328 kb on - strand, within tyrP at 3241.328 kb on - strand, within tyrP at 3241.346 kb on - strand, within tyrP at 3241.346 kb on - strand, within tyrP
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 3,239,640 - -1.3 3,240,042 - yecA NOLOHH_16470 0.54 -1.2 3,240,183 + yecA NOLOHH_16470 0.75 -1.1 3,240,213 + yecA NOLOHH_16470 0.80 -1.5 3,240,213 + yecA NOLOHH_16470 0.80 -0.6 3,240,344 + -0.4 3,240,344 + +0.6 3,240,401 + -1.3 3,240,468 - -0.5 3,240,669 - tyrP NOLOHH_16475 0.22 -0.1 3,240,702 - tyrP NOLOHH_16475 0.24 +0.7 3,240,739 - tyrP NOLOHH_16475 0.27 +0.1 3,240,856 - tyrP NOLOHH_16475 0.37 -1.4 3,240,933 - tyrP NOLOHH_16475 0.43 -0.5 3,240,933 - tyrP NOLOHH_16475 0.43 -0.2 3,240,979 - tyrP NOLOHH_16475 0.47 -0.1 3,240,979 - tyrP NOLOHH_16475 0.47 +0.2 3,241,004 - tyrP NOLOHH_16475 0.49 +0.2 3,241,004 - tyrP NOLOHH_16475 0.49 -0.4 3,241,004 - tyrP NOLOHH_16475 0.49 +0.4 3,241,004 - tyrP NOLOHH_16475 0.49 +0.1 3,241,004 - tyrP NOLOHH_16475 0.49 -1.9 3,241,004 - tyrP NOLOHH_16475 0.49 +0.5 3,241,004 - tyrP NOLOHH_16475 0.49 +1.2 3,241,099 - tyrP NOLOHH_16475 0.57 +0.9 3,241,144 - tyrP NOLOHH_16475 0.61 +0.2 3,241,189 - tyrP NOLOHH_16475 0.64 -0.0 3,241,269 - tyrP NOLOHH_16475 0.71 +0.5 3,241,275 - tyrP NOLOHH_16475 0.72 -0.1 3,241,275 - tyrP NOLOHH_16475 0.72 -2.4 3,241,275 - tyrP NOLOHH_16475 0.72 -0.7 3,241,328 - tyrP NOLOHH_16475 0.76 +0.5 3,241,328 - tyrP NOLOHH_16475 0.76 -1.5 3,241,328 - tyrP NOLOHH_16475 0.76 -1.9 3,241,346 - tyrP NOLOHH_16475 0.77 -0.5 3,241,346 - tyrP NOLOHH_16475 0.77 +0.3
Or see this region's nucleotide sequence