Strain Fitness in Escherichia coli ECOR27 around NOLOHH_16080

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_16075 and NOLOHH_16080 are separated by 419 nucleotidesNOLOHH_16080 and NOLOHH_16085 are separated by 72 nucleotides NOLOHH_16075: NOLOHH_16075 - HNH endonuclease, at 3,160,794 to 3,161,720 _16075 NOLOHH_16080: NOLOHH_16080 - hypothetical protein, at 3,162,140 to 3,165,868 _16080 NOLOHH_16085: NOLOHH_16085 - PLD phosphodiesterase domain-containing protein, at 3,165,941 to 3,169,534 _16085 Position (kb) 3162 3163 3164 3165 3166Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3161.175 kb on - strand, within NOLOHH_16075at 3161.265 kb on - strand, within NOLOHH_16075at 3161.313 kb on - strand, within NOLOHH_16075at 3161.375 kb on + strand, within NOLOHH_16075at 3161.391 kb on - strand, within NOLOHH_16075at 3161.427 kb on - strand, within NOLOHH_16075at 3161.459 kb on - strand, within NOLOHH_16075at 3161.483 kb on - strand, within NOLOHH_16075at 3161.531 kb on + strand, within NOLOHH_16075at 3161.744 kb on - strandat 3161.744 kb on - strandat 3161.822 kb on - strandat 3161.844 kb on - strandat 3162.194 kb on - strandat 3162.518 kb on + strand, within NOLOHH_16080at 3166.059 kb on + strandat 3166.243 kb on - strandat 3166.393 kb on + strand, within NOLOHH_16085at 3166.394 kb on - strand, within NOLOHH_16085at 3166.421 kb on + strand, within NOLOHH_16085at 3166.422 kb on - strand, within NOLOHH_16085at 3166.519 kb on - strand, within NOLOHH_16085

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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3,161,175 - NOLOHH_16075 0.41 +0.7
3,161,265 - NOLOHH_16075 0.51 +0.9
3,161,313 - NOLOHH_16075 0.56 +0.4
3,161,375 + NOLOHH_16075 0.63 +1.1
3,161,391 - NOLOHH_16075 0.64 +0.9
3,161,427 - NOLOHH_16075 0.68 +1.6
3,161,459 - NOLOHH_16075 0.72 +1.0
3,161,483 - NOLOHH_16075 0.74 +1.0
3,161,531 + NOLOHH_16075 0.80 +0.3
3,161,744 - +1.0
3,161,744 - +0.2
3,161,822 - +0.2
3,161,844 - -0.1
3,162,194 - -2.7
3,162,518 + NOLOHH_16080 0.10 -2.4
3,166,059 + +1.3
3,166,243 - +3.6
3,166,393 + NOLOHH_16085 0.13 -1.7
3,166,394 - NOLOHH_16085 0.13 -1.9
3,166,421 + NOLOHH_16085 0.13 -0.4
3,166,422 - NOLOHH_16085 0.13 +0.2
3,166,519 - NOLOHH_16085 0.16 -0.6

Or see this region's nucleotide sequence