Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt xerC and yigA overlap by 4 nucleotides yigA and dapF overlap by 4 nucleotides dapF and yifL are separated by 36 nucleotides yifL and NOLOHH_06570 are separated by 349 nucleotides
NOLOHH_06550: xerC - tyrosine recombinase XerC, at 1,235,299 to 1,236,195
xerC
NOLOHH_06555: yigA - Uncharacterized protein YigA, at 1,236,192 to 1,236,899
yigA
NOLOHH_06560: dapF - diaminopimelate epimerase, at 1,236,896 to 1,237,720
dapF
NOLOHH_06565: yifL - Uncharacterized lipoprotein YifL, at 1,237,757 to 1,237,960
yifL
NOLOHH_06570: NOLOHH_06570 - hypothetical protein, at 1,238,310 to 1,238,864
_06570
Position (kb)
1236
1237
1238 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1236.114 kb on + strand at 1236.114 kb on + strand at 1236.115 kb on - strand at 1236.115 kb on - strand at 1236.115 kb on - strand at 1236.115 kb on - strand at 1236.118 kb on + strand at 1236.160 kb on + strand at 1236.160 kb on + strand at 1236.160 kb on + strand at 1236.161 kb on - strand at 1236.161 kb on - strand at 1236.161 kb on - strand at 1236.161 kb on - strand at 1236.161 kb on - strand at 1236.161 kb on - strand at 1236.161 kb on - strand at 1236.164 kb on + strand at 1236.172 kb on + strand at 1236.173 kb on - strand at 1236.173 kb on - strand at 1236.185 kb on - strand at 1236.196 kb on - strand at 1236.196 kb on - strand at 1236.196 kb on - strand at 1236.196 kb on - strand at 1236.252 kb on + strand at 1236.253 kb on - strand at 1236.253 kb on - strand at 1236.253 kb on - strand at 1236.253 kb on - strand at 1236.443 kb on + strand, within yigA at 1236.444 kb on - strand, within yigA at 1236.471 kb on + strand, within yigA at 1236.471 kb on + strand, within yigA at 1236.504 kb on + strand, within yigA at 1236.505 kb on - strand, within yigA at 1236.629 kb on - strand, within yigA at 1236.629 kb on - strand, within yigA at 1236.629 kb on - strand, within yigA at 1236.633 kb on + strand, within yigA at 1236.707 kb on + strand, within yigA at 1236.707 kb on + strand, within yigA at 1236.707 kb on + strand, within yigA at 1236.707 kb on + strand, within yigA at 1236.708 kb on - strand, within yigA at 1236.713 kb on + strand, within yigA at 1236.714 kb on - strand, within yigA at 1236.714 kb on - strand, within yigA at 1236.899 kb on + strand at 1236.899 kb on + strand at 1236.900 kb on - strand at 1236.900 kb on - strand at 1236.900 kb on - strand at 1236.900 kb on - strand at 1236.900 kb on - strand at 1236.908 kb on - strand at 1236.908 kb on - strand at 1236.908 kb on - strand at 1237.726 kb on - strand at 1237.726 kb on - strand at 1237.759 kb on - strand at 1237.759 kb on - strand at 1237.761 kb on + strand at 1237.762 kb on - strand at 1237.882 kb on - strand, within yifL at 1237.882 kb on - strand, within yifL at 1237.924 kb on + strand, within yifL at 1237.924 kb on + strand, within yifL at 1237.924 kb on + strand, within yifL at 1237.925 kb on - strand, within yifL at 1237.925 kb on - strand, within yifL at 1237.925 kb on - strand, within yifL at 1237.925 kb on - strand, within yifL at 1237.928 kb on + strand, within yifL at 1237.929 kb on - strand, within yifL at 1237.929 kb on - strand, within yifL at 1237.929 kb on - strand, within yifL at 1237.929 kb on - strand, within yifL at 1237.931 kb on + strand, within yifL at 1237.932 kb on - strand, within yifL at 1237.932 kb on - strand, within yifL at 1237.932 kb on - strand, within yifL at 1237.932 kb on - strand, within yifL at 1237.946 kb on - strand at 1237.975 kb on - strand at 1237.998 kb on + strand at 1237.998 kb on + strand at 1237.998 kb on + strand at 1237.998 kb on + strand at 1237.998 kb on + strand at 1237.999 kb on - strand at 1237.999 kb on - strand at 1237.999 kb on - strand at 1237.999 kb on - strand at 1238.019 kb on - strand at 1238.019 kb on - strand at 1238.019 kb on - strand at 1238.044 kb on - strand at 1238.044 kb on - strand at 1238.076 kb on + strand at 1238.076 kb on + strand at 1238.077 kb on - strand at 1238.085 kb on + strand at 1238.085 kb on + strand at 1238.086 kb on - strand at 1238.100 kb on - strand at 1238.113 kb on - strand at 1238.165 kb on + strand at 1238.165 kb on + strand at 1238.165 kb on + strand at 1238.165 kb on + strand at 1238.165 kb on + strand at 1238.165 kb on + strand at 1238.165 kb on + strand at 1238.166 kb on - strand at 1238.166 kb on - strand at 1238.166 kb on - strand at 1238.216 kb on - strand at 1238.269 kb on + strand at 1238.269 kb on + strand at 1238.270 kb on - strand at 1238.270 kb on - strand at 1238.270 kb on - strand at 1238.270 kb on - strand at 1238.270 kb on - strand at 1238.292 kb on - strand at 1238.292 kb on - strand at 1238.292 kb on - strand at 1238.301 kb on + strand at 1238.317 kb on + strand at 1238.322 kb on - strand at 1238.351 kb on + strand at 1238.352 kb on - strand at 1238.395 kb on + strand, within NOLOHH_06570 at 1238.396 kb on - strand, within NOLOHH_06570 at 1238.429 kb on + strand, within NOLOHH_06570 at 1238.432 kb on - strand, within NOLOHH_06570 at 1238.444 kb on - strand, within NOLOHH_06570 at 1238.444 kb on - strand, within NOLOHH_06570 at 1238.585 kb on + strand, within NOLOHH_06570 at 1238.586 kb on - strand, within NOLOHH_06570 at 1238.606 kb on + strand, within NOLOHH_06570 at 1238.607 kb on - strand, within NOLOHH_06570 at 1238.617 kb on + strand, within NOLOHH_06570 at 1238.617 kb on + strand, within NOLOHH_06570 at 1238.617 kb on + strand, within NOLOHH_06570 at 1238.617 kb on + strand, within NOLOHH_06570 at 1238.617 kb on + strand, within NOLOHH_06570 at 1238.617 kb on + strand, within NOLOHH_06570 at 1238.617 kb on + strand, within NOLOHH_06570 at 1238.618 kb on - strand, within NOLOHH_06570 at 1238.618 kb on - strand, within NOLOHH_06570 at 1238.618 kb on - strand, within NOLOHH_06570 at 1238.618 kb on - strand, within NOLOHH_06570 at 1238.618 kb on - strand, within NOLOHH_06570 at 1238.621 kb on + strand, within NOLOHH_06570 at 1238.621 kb on + strand, within NOLOHH_06570 at 1238.622 kb on - strand, within NOLOHH_06570 at 1238.625 kb on - strand, within NOLOHH_06570 at 1238.630 kb on + strand, within NOLOHH_06570 at 1238.630 kb on + strand, within NOLOHH_06570 at 1238.631 kb on - strand, within NOLOHH_06570 at 1238.637 kb on + strand, within NOLOHH_06570 at 1238.637 kb on + strand, within NOLOHH_06570 at 1238.637 kb on + strand, within NOLOHH_06570 at 1238.637 kb on + strand, within NOLOHH_06570 at 1238.637 kb on + strand, within NOLOHH_06570 at 1238.637 kb on + strand, within NOLOHH_06570 at 1238.637 kb on + strand, within NOLOHH_06570 at 1238.637 kb on + strand, within NOLOHH_06570 at 1238.637 kb on + strand, within NOLOHH_06570 at 1238.637 kb on + strand, within NOLOHH_06570 at 1238.637 kb on + strand, within NOLOHH_06570 at 1238.638 kb on - strand, within NOLOHH_06570 at 1238.638 kb on - strand, within NOLOHH_06570 at 1238.638 kb on - strand, within NOLOHH_06570 at 1238.638 kb on - strand, within NOLOHH_06570 at 1238.638 kb on - strand, within NOLOHH_06570 at 1238.638 kb on - strand, within NOLOHH_06570 at 1238.638 kb on - strand, within NOLOHH_06570 at 1238.638 kb on - strand, within NOLOHH_06570 at 1238.638 kb on - strand, within NOLOHH_06570 at 1238.639 kb on + strand, within NOLOHH_06570 at 1238.639 kb on + strand, within NOLOHH_06570 at 1238.639 kb on + strand, within NOLOHH_06570 at 1238.639 kb on + strand, within NOLOHH_06570 at 1238.639 kb on + strand, within NOLOHH_06570 at 1238.639 kb on + strand, within NOLOHH_06570 at 1238.639 kb on + strand, within NOLOHH_06570 at 1238.640 kb on - strand, within NOLOHH_06570 at 1238.640 kb on - strand, within NOLOHH_06570 at 1238.677 kb on + strand, within NOLOHH_06570 at 1238.677 kb on + strand, within NOLOHH_06570
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 1,236,114 + -1.1 1,236,114 + -1.1 1,236,115 - -1.5 1,236,115 - +1.1 1,236,115 - -2.1 1,236,115 - +0.2 1,236,118 + -1.7 1,236,160 + -1.1 1,236,160 + -3.6 1,236,160 + -0.2 1,236,161 - -3.6 1,236,161 - -3.3 1,236,161 - -2.9 1,236,161 - -0.6 1,236,161 - -0.1 1,236,161 - +0.3 1,236,161 - -1.9 1,236,164 + +0.6 1,236,172 + +1.8 1,236,173 - +0.8 1,236,173 - +1.4 1,236,185 - -0.5 1,236,196 - -0.6 1,236,196 - +0.2 1,236,196 - +0.2 1,236,196 - +0.8 1,236,252 + -0.1 1,236,253 - +0.1 1,236,253 - +0.5 1,236,253 - -0.6 1,236,253 - -0.1 1,236,443 + yigA NOLOHH_06555 0.35 +0.2 1,236,444 - yigA NOLOHH_06555 0.36 -0.1 1,236,471 + yigA NOLOHH_06555 0.39 -1.7 1,236,471 + yigA NOLOHH_06555 0.39 -0.9 1,236,504 + yigA NOLOHH_06555 0.44 +0.9 1,236,505 - yigA NOLOHH_06555 0.44 +0.3 1,236,629 - yigA NOLOHH_06555 0.62 -0.0 1,236,629 - yigA NOLOHH_06555 0.62 -1.4 1,236,629 - yigA NOLOHH_06555 0.62 +0.0 1,236,633 + yigA NOLOHH_06555 0.62 -0.5 1,236,707 + yigA NOLOHH_06555 0.73 -1.2 1,236,707 + yigA NOLOHH_06555 0.73 -0.0 1,236,707 + yigA NOLOHH_06555 0.73 -0.4 1,236,707 + yigA NOLOHH_06555 0.73 -4.1 1,236,708 - yigA NOLOHH_06555 0.73 -1.4 1,236,713 + yigA NOLOHH_06555 0.74 -0.2 1,236,714 - yigA NOLOHH_06555 0.74 -0.8 1,236,714 - yigA NOLOHH_06555 0.74 +0.3 1,236,899 + -3.0 1,236,899 + -0.9 1,236,900 - +0.6 1,236,900 - +0.1 1,236,900 - -0.0 1,236,900 - +0.2 1,236,900 - -0.8 1,236,908 - -0.6 1,236,908 - +0.5 1,236,908 - +0.1 1,237,726 - -0.3 1,237,726 - -1.2 1,237,759 - -0.7 1,237,759 - -1.7 1,237,761 + -0.1 1,237,762 - +0.6 1,237,882 - yifL NOLOHH_06565 0.61 +0.8 1,237,882 - yifL NOLOHH_06565 0.61 -1.8 1,237,924 + yifL NOLOHH_06565 0.82 -1.1 1,237,924 + yifL NOLOHH_06565 0.82 -2.7 1,237,924 + yifL NOLOHH_06565 0.82 -3.6 1,237,925 - yifL NOLOHH_06565 0.82 +0.5 1,237,925 - yifL NOLOHH_06565 0.82 -0.3 1,237,925 - yifL NOLOHH_06565 0.82 -0.4 1,237,925 - yifL NOLOHH_06565 0.82 -0.3 1,237,928 + yifL NOLOHH_06565 0.84 -0.3 1,237,929 - yifL NOLOHH_06565 0.84 -1.9 1,237,929 - yifL NOLOHH_06565 0.84 -0.6 1,237,929 - yifL NOLOHH_06565 0.84 -0.1 1,237,929 - yifL NOLOHH_06565 0.84 -0.7 1,237,931 + yifL NOLOHH_06565 0.85 -1.6 1,237,932 - yifL NOLOHH_06565 0.86 +0.9 1,237,932 - yifL NOLOHH_06565 0.86 +0.1 1,237,932 - yifL NOLOHH_06565 0.86 -0.9 1,237,932 - yifL NOLOHH_06565 0.86 +0.4 1,237,946 - -1.5 1,237,975 - -0.2 1,237,998 + +2.4 1,237,998 + +0.4 1,237,998 + -0.9 1,237,998 + +0.5 1,237,998 + -0.1 1,237,999 - -0.9 1,237,999 - +0.1 1,237,999 - +0.8 1,237,999 - +0.4 1,238,019 - +0.2 1,238,019 - +0.6 1,238,019 - -0.1 1,238,044 - +0.3 1,238,044 - -0.4 1,238,076 + +0.2 1,238,076 + +0.3 1,238,077 - -0.7 1,238,085 + -0.4 1,238,085 + -0.5 1,238,086 - +0.5 1,238,100 - +1.0 1,238,113 - -0.0 1,238,165 + -0.6 1,238,165 + -1.3 1,238,165 + -0.3 1,238,165 + +0.4 1,238,165 + +0.0 1,238,165 + -0.5 1,238,165 + +0.7 1,238,166 - +0.9 1,238,166 - -0.1 1,238,166 - +0.9 1,238,216 - +0.8 1,238,269 + +0.4 1,238,269 + -0.2 1,238,270 - -0.1 1,238,270 - -0.1 1,238,270 - +0.2 1,238,270 - +0.8 1,238,270 - +0.7 1,238,292 - +0.3 1,238,292 - +1.8 1,238,292 - -0.3 1,238,301 + +0.7 1,238,317 + +0.0 1,238,322 - -0.2 1,238,351 + +0.2 1,238,352 - +0.9 1,238,395 + NOLOHH_06570 0.15 +0.3 1,238,396 - NOLOHH_06570 0.15 +0.4 1,238,429 + NOLOHH_06570 0.21 +0.7 1,238,432 - NOLOHH_06570 0.22 +0.3 1,238,444 - NOLOHH_06570 0.24 +0.2 1,238,444 - NOLOHH_06570 0.24 +0.4 1,238,585 + NOLOHH_06570 0.50 -0.5 1,238,586 - NOLOHH_06570 0.50 +0.2 1,238,606 + NOLOHH_06570 0.53 +0.0 1,238,607 - NOLOHH_06570 0.54 +1.0 1,238,617 + NOLOHH_06570 0.55 -0.8 1,238,617 + NOLOHH_06570 0.55 +0.9 1,238,617 + NOLOHH_06570 0.55 +0.6 1,238,617 + NOLOHH_06570 0.55 -0.6 1,238,617 + NOLOHH_06570 0.55 -1.4 1,238,617 + NOLOHH_06570 0.55 +1.0 1,238,617 + NOLOHH_06570 0.55 +0.9 1,238,618 - NOLOHH_06570 0.55 +0.6 1,238,618 - NOLOHH_06570 0.55 +0.6 1,238,618 - NOLOHH_06570 0.55 -0.4 1,238,618 - NOLOHH_06570 0.55 +0.8 1,238,618 - NOLOHH_06570 0.55 +0.6 1,238,621 + NOLOHH_06570 0.56 +0.0 1,238,621 + NOLOHH_06570 0.56 +0.5 1,238,622 - NOLOHH_06570 0.56 -0.4 1,238,625 - NOLOHH_06570 0.57 +1.2 1,238,630 + NOLOHH_06570 0.58 -0.3 1,238,630 + NOLOHH_06570 0.58 -0.2 1,238,631 - NOLOHH_06570 0.58 +0.3 1,238,637 + NOLOHH_06570 0.59 -0.1 1,238,637 + NOLOHH_06570 0.59 -2.2 1,238,637 + NOLOHH_06570 0.59 +0.0 1,238,637 + NOLOHH_06570 0.59 +0.3 1,238,637 + NOLOHH_06570 0.59 +0.3 1,238,637 + NOLOHH_06570 0.59 -0.3 1,238,637 + NOLOHH_06570 0.59 -0.4 1,238,637 + NOLOHH_06570 0.59 -0.5 1,238,637 + NOLOHH_06570 0.59 +0.5 1,238,637 + NOLOHH_06570 0.59 +0.4 1,238,637 + NOLOHH_06570 0.59 +0.4 1,238,638 - NOLOHH_06570 0.59 +0.3 1,238,638 - NOLOHH_06570 0.59 +1.2 1,238,638 - NOLOHH_06570 0.59 +0.6 1,238,638 - NOLOHH_06570 0.59 -1.2 1,238,638 - NOLOHH_06570 0.59 -0.6 1,238,638 - NOLOHH_06570 0.59 +0.7 1,238,638 - NOLOHH_06570 0.59 +0.1 1,238,638 - NOLOHH_06570 0.59 -1.4 1,238,638 - NOLOHH_06570 0.59 -0.2 1,238,639 + NOLOHH_06570 0.59 -0.4 1,238,639 + NOLOHH_06570 0.59 -1.7 1,238,639 + NOLOHH_06570 0.59 +0.4 1,238,639 + NOLOHH_06570 0.59 -0.2 1,238,639 + NOLOHH_06570 0.59 +0.6 1,238,639 + NOLOHH_06570 0.59 +0.4 1,238,639 + NOLOHH_06570 0.59 +0.4 1,238,640 - NOLOHH_06570 0.59 +1.6 1,238,640 - NOLOHH_06570 0.59 +0.2 1,238,677 + NOLOHH_06570 0.66 +3.1 1,238,677 + NOLOHH_06570 0.66 -0.3
Or see this region's nucleotide sequence