Strain Fitness in Escherichia coli ECOR27 around NOLOHH_06560

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntxerC and yigA overlap by 4 nucleotidesyigA and dapF overlap by 4 nucleotidesdapF and yifL are separated by 36 nucleotidesyifL and NOLOHH_06570 are separated by 349 nucleotides NOLOHH_06550: xerC - tyrosine recombinase XerC, at 1,235,299 to 1,236,195 xerC NOLOHH_06555: yigA - Uncharacterized protein YigA, at 1,236,192 to 1,236,899 yigA NOLOHH_06560: dapF - diaminopimelate epimerase, at 1,236,896 to 1,237,720 dapF NOLOHH_06565: yifL - Uncharacterized lipoprotein YifL, at 1,237,757 to 1,237,960 yifL NOLOHH_06570: NOLOHH_06570 - hypothetical protein, at 1,238,310 to 1,238,864 _06570 Position (kb) 1236 1237 1238Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1236.114 kb on + strandat 1236.114 kb on + strandat 1236.115 kb on - strandat 1236.115 kb on - strandat 1236.115 kb on - strandat 1236.115 kb on - strandat 1236.118 kb on + strandat 1236.160 kb on + strandat 1236.160 kb on + strandat 1236.160 kb on + strandat 1236.161 kb on - strandat 1236.161 kb on - strandat 1236.161 kb on - strandat 1236.161 kb on - strandat 1236.161 kb on - strandat 1236.161 kb on - strandat 1236.161 kb on - strandat 1236.164 kb on + strandat 1236.172 kb on + strandat 1236.173 kb on - strandat 1236.173 kb on - strandat 1236.185 kb on - strandat 1236.196 kb on - strandat 1236.196 kb on - strandat 1236.196 kb on - strandat 1236.196 kb on - strandat 1236.252 kb on + strandat 1236.253 kb on - strandat 1236.253 kb on - strandat 1236.253 kb on - strandat 1236.253 kb on - strandat 1236.443 kb on + strand, within yigAat 1236.444 kb on - strand, within yigAat 1236.471 kb on + strand, within yigAat 1236.471 kb on + strand, within yigAat 1236.504 kb on + strand, within yigAat 1236.505 kb on - strand, within yigAat 1236.629 kb on - strand, within yigAat 1236.629 kb on - strand, within yigAat 1236.629 kb on - strand, within yigAat 1236.633 kb on + strand, within yigAat 1236.707 kb on + strand, within yigAat 1236.707 kb on + strand, within yigAat 1236.707 kb on + strand, within yigAat 1236.707 kb on + strand, within yigAat 1236.708 kb on - strand, within yigAat 1236.713 kb on + strand, within yigAat 1236.714 kb on - strand, within yigAat 1236.714 kb on - strand, within yigAat 1236.899 kb on + strandat 1236.899 kb on + strandat 1236.900 kb on - strandat 1236.900 kb on - strandat 1236.900 kb on - strandat 1236.900 kb on - strandat 1236.900 kb on - strandat 1236.908 kb on - strandat 1236.908 kb on - strandat 1236.908 kb on - strandat 1237.726 kb on - strandat 1237.726 kb on - strandat 1237.759 kb on - strandat 1237.759 kb on - strandat 1237.761 kb on + strandat 1237.762 kb on - strandat 1237.882 kb on - strand, within yifLat 1237.882 kb on - strand, within yifLat 1237.924 kb on + strand, within yifLat 1237.924 kb on + strand, within yifLat 1237.924 kb on + strand, within yifLat 1237.925 kb on - strand, within yifLat 1237.925 kb on - strand, within yifLat 1237.925 kb on - strand, within yifLat 1237.925 kb on - strand, within yifLat 1237.928 kb on + strand, within yifLat 1237.929 kb on - strand, within yifLat 1237.929 kb on - strand, within yifLat 1237.929 kb on - strand, within yifLat 1237.929 kb on - strand, within yifLat 1237.931 kb on + strand, within yifLat 1237.932 kb on - strand, within yifLat 1237.932 kb on - strand, within yifLat 1237.932 kb on - strand, within yifLat 1237.932 kb on - strand, within yifLat 1237.946 kb on - strandat 1237.975 kb on - strandat 1237.998 kb on + strandat 1237.998 kb on + strandat 1237.998 kb on + strandat 1237.998 kb on + strandat 1237.998 kb on + strandat 1237.999 kb on - strandat 1237.999 kb on - strandat 1237.999 kb on - strandat 1237.999 kb on - strandat 1238.019 kb on - strandat 1238.019 kb on - strandat 1238.019 kb on - strandat 1238.044 kb on - strandat 1238.044 kb on - strandat 1238.076 kb on + strandat 1238.076 kb on + strandat 1238.077 kb on - strandat 1238.085 kb on + strandat 1238.085 kb on + strandat 1238.086 kb on - strandat 1238.100 kb on - strandat 1238.113 kb on - strandat 1238.165 kb on + strandat 1238.165 kb on + strandat 1238.165 kb on + strandat 1238.165 kb on + strandat 1238.165 kb on + strandat 1238.165 kb on + strandat 1238.165 kb on + strandat 1238.166 kb on - strandat 1238.166 kb on - strandat 1238.166 kb on - strandat 1238.216 kb on - strandat 1238.269 kb on + strandat 1238.269 kb on + strandat 1238.270 kb on - strandat 1238.270 kb on - strandat 1238.270 kb on - strandat 1238.270 kb on - strandat 1238.270 kb on - strandat 1238.292 kb on - strandat 1238.292 kb on - strandat 1238.292 kb on - strandat 1238.301 kb on + strandat 1238.317 kb on + strandat 1238.322 kb on - strandat 1238.351 kb on + strandat 1238.352 kb on - strandat 1238.395 kb on + strand, within NOLOHH_06570at 1238.396 kb on - strand, within NOLOHH_06570at 1238.429 kb on + strand, within NOLOHH_06570at 1238.432 kb on - strand, within NOLOHH_06570at 1238.444 kb on - strand, within NOLOHH_06570at 1238.444 kb on - strand, within NOLOHH_06570at 1238.585 kb on + strand, within NOLOHH_06570at 1238.586 kb on - strand, within NOLOHH_06570at 1238.606 kb on + strand, within NOLOHH_06570at 1238.607 kb on - strand, within NOLOHH_06570at 1238.617 kb on + strand, within NOLOHH_06570at 1238.617 kb on + strand, within NOLOHH_06570at 1238.617 kb on + strand, within NOLOHH_06570at 1238.617 kb on + strand, within NOLOHH_06570at 1238.617 kb on + strand, within NOLOHH_06570at 1238.617 kb on + strand, within NOLOHH_06570at 1238.617 kb on + strand, within NOLOHH_06570at 1238.618 kb on - strand, within NOLOHH_06570at 1238.618 kb on - strand, within NOLOHH_06570at 1238.618 kb on - strand, within NOLOHH_06570at 1238.618 kb on - strand, within NOLOHH_06570at 1238.618 kb on - strand, within NOLOHH_06570at 1238.621 kb on + strand, within NOLOHH_06570at 1238.621 kb on + strand, within NOLOHH_06570at 1238.622 kb on - strand, within NOLOHH_06570at 1238.625 kb on - strand, within NOLOHH_06570at 1238.630 kb on + strand, within NOLOHH_06570at 1238.630 kb on + strand, within NOLOHH_06570at 1238.631 kb on - strand, within NOLOHH_06570at 1238.637 kb on + strand, within NOLOHH_06570at 1238.637 kb on + strand, within NOLOHH_06570at 1238.637 kb on + strand, within NOLOHH_06570at 1238.637 kb on + strand, within NOLOHH_06570at 1238.637 kb on + strand, within NOLOHH_06570at 1238.637 kb on + strand, within NOLOHH_06570at 1238.637 kb on + strand, within NOLOHH_06570at 1238.637 kb on + strand, within NOLOHH_06570at 1238.637 kb on + strand, within NOLOHH_06570at 1238.637 kb on + strand, within NOLOHH_06570at 1238.637 kb on + strand, within NOLOHH_06570at 1238.638 kb on - strand, within NOLOHH_06570at 1238.638 kb on - strand, within NOLOHH_06570at 1238.638 kb on - strand, within NOLOHH_06570at 1238.638 kb on - strand, within NOLOHH_06570at 1238.638 kb on - strand, within NOLOHH_06570at 1238.638 kb on - strand, within NOLOHH_06570at 1238.638 kb on - strand, within NOLOHH_06570at 1238.638 kb on - strand, within NOLOHH_06570at 1238.638 kb on - strand, within NOLOHH_06570at 1238.639 kb on + strand, within NOLOHH_06570at 1238.639 kb on + strand, within NOLOHH_06570at 1238.639 kb on + strand, within NOLOHH_06570at 1238.639 kb on + strand, within NOLOHH_06570at 1238.639 kb on + strand, within NOLOHH_06570at 1238.639 kb on + strand, within NOLOHH_06570at 1238.639 kb on + strand, within NOLOHH_06570at 1238.640 kb on - strand, within NOLOHH_06570at 1238.640 kb on - strand, within NOLOHH_06570at 1238.677 kb on + strand, within NOLOHH_06570at 1238.677 kb on + strand, within NOLOHH_06570

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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1,236,114 + -1.1
1,236,114 + -1.1
1,236,115 - -1.5
1,236,115 - +1.1
1,236,115 - -2.1
1,236,115 - +0.2
1,236,118 + -1.7
1,236,160 + -1.1
1,236,160 + -3.6
1,236,160 + -0.2
1,236,161 - -3.6
1,236,161 - -3.3
1,236,161 - -2.9
1,236,161 - -0.6
1,236,161 - -0.1
1,236,161 - +0.3
1,236,161 - -1.9
1,236,164 + +0.6
1,236,172 + +1.8
1,236,173 - +0.8
1,236,173 - +1.4
1,236,185 - -0.5
1,236,196 - -0.6
1,236,196 - +0.2
1,236,196 - +0.2
1,236,196 - +0.8
1,236,252 + -0.1
1,236,253 - +0.1
1,236,253 - +0.5
1,236,253 - -0.6
1,236,253 - -0.1
1,236,443 + yigA NOLOHH_06555 0.35 +0.2
1,236,444 - yigA NOLOHH_06555 0.36 -0.1
1,236,471 + yigA NOLOHH_06555 0.39 -1.7
1,236,471 + yigA NOLOHH_06555 0.39 -0.9
1,236,504 + yigA NOLOHH_06555 0.44 +0.9
1,236,505 - yigA NOLOHH_06555 0.44 +0.3
1,236,629 - yigA NOLOHH_06555 0.62 -0.0
1,236,629 - yigA NOLOHH_06555 0.62 -1.4
1,236,629 - yigA NOLOHH_06555 0.62 +0.0
1,236,633 + yigA NOLOHH_06555 0.62 -0.5
1,236,707 + yigA NOLOHH_06555 0.73 -1.2
1,236,707 + yigA NOLOHH_06555 0.73 -0.0
1,236,707 + yigA NOLOHH_06555 0.73 -0.4
1,236,707 + yigA NOLOHH_06555 0.73 -4.1
1,236,708 - yigA NOLOHH_06555 0.73 -1.4
1,236,713 + yigA NOLOHH_06555 0.74 -0.2
1,236,714 - yigA NOLOHH_06555 0.74 -0.8
1,236,714 - yigA NOLOHH_06555 0.74 +0.3
1,236,899 + -3.0
1,236,899 + -0.9
1,236,900 - +0.6
1,236,900 - +0.1
1,236,900 - -0.0
1,236,900 - +0.2
1,236,900 - -0.8
1,236,908 - -0.6
1,236,908 - +0.5
1,236,908 - +0.1
1,237,726 - -0.3
1,237,726 - -1.2
1,237,759 - -0.7
1,237,759 - -1.7
1,237,761 + -0.1
1,237,762 - +0.6
1,237,882 - yifL NOLOHH_06565 0.61 +0.8
1,237,882 - yifL NOLOHH_06565 0.61 -1.8
1,237,924 + yifL NOLOHH_06565 0.82 -1.1
1,237,924 + yifL NOLOHH_06565 0.82 -2.7
1,237,924 + yifL NOLOHH_06565 0.82 -3.6
1,237,925 - yifL NOLOHH_06565 0.82 +0.5
1,237,925 - yifL NOLOHH_06565 0.82 -0.3
1,237,925 - yifL NOLOHH_06565 0.82 -0.4
1,237,925 - yifL NOLOHH_06565 0.82 -0.3
1,237,928 + yifL NOLOHH_06565 0.84 -0.3
1,237,929 - yifL NOLOHH_06565 0.84 -1.9
1,237,929 - yifL NOLOHH_06565 0.84 -0.6
1,237,929 - yifL NOLOHH_06565 0.84 -0.1
1,237,929 - yifL NOLOHH_06565 0.84 -0.7
1,237,931 + yifL NOLOHH_06565 0.85 -1.6
1,237,932 - yifL NOLOHH_06565 0.86 +0.9
1,237,932 - yifL NOLOHH_06565 0.86 +0.1
1,237,932 - yifL NOLOHH_06565 0.86 -0.9
1,237,932 - yifL NOLOHH_06565 0.86 +0.4
1,237,946 - -1.5
1,237,975 - -0.2
1,237,998 + +2.4
1,237,998 + +0.4
1,237,998 + -0.9
1,237,998 + +0.5
1,237,998 + -0.1
1,237,999 - -0.9
1,237,999 - +0.1
1,237,999 - +0.8
1,237,999 - +0.4
1,238,019 - +0.2
1,238,019 - +0.6
1,238,019 - -0.1
1,238,044 - +0.3
1,238,044 - -0.4
1,238,076 + +0.2
1,238,076 + +0.3
1,238,077 - -0.7
1,238,085 + -0.4
1,238,085 + -0.5
1,238,086 - +0.5
1,238,100 - +1.0
1,238,113 - -0.0
1,238,165 + -0.6
1,238,165 + -1.3
1,238,165 + -0.3
1,238,165 + +0.4
1,238,165 + +0.0
1,238,165 + -0.5
1,238,165 + +0.7
1,238,166 - +0.9
1,238,166 - -0.1
1,238,166 - +0.9
1,238,216 - +0.8
1,238,269 + +0.4
1,238,269 + -0.2
1,238,270 - -0.1
1,238,270 - -0.1
1,238,270 - +0.2
1,238,270 - +0.8
1,238,270 - +0.7
1,238,292 - +0.3
1,238,292 - +1.8
1,238,292 - -0.3
1,238,301 + +0.7
1,238,317 + +0.0
1,238,322 - -0.2
1,238,351 + +0.2
1,238,352 - +0.9
1,238,395 + NOLOHH_06570 0.15 +0.3
1,238,396 - NOLOHH_06570 0.15 +0.4
1,238,429 + NOLOHH_06570 0.21 +0.7
1,238,432 - NOLOHH_06570 0.22 +0.3
1,238,444 - NOLOHH_06570 0.24 +0.2
1,238,444 - NOLOHH_06570 0.24 +0.4
1,238,585 + NOLOHH_06570 0.50 -0.5
1,238,586 - NOLOHH_06570 0.50 +0.2
1,238,606 + NOLOHH_06570 0.53 +0.0
1,238,607 - NOLOHH_06570 0.54 +1.0
1,238,617 + NOLOHH_06570 0.55 -0.8
1,238,617 + NOLOHH_06570 0.55 +0.9
1,238,617 + NOLOHH_06570 0.55 +0.6
1,238,617 + NOLOHH_06570 0.55 -0.6
1,238,617 + NOLOHH_06570 0.55 -1.4
1,238,617 + NOLOHH_06570 0.55 +1.0
1,238,617 + NOLOHH_06570 0.55 +0.9
1,238,618 - NOLOHH_06570 0.55 +0.6
1,238,618 - NOLOHH_06570 0.55 +0.6
1,238,618 - NOLOHH_06570 0.55 -0.4
1,238,618 - NOLOHH_06570 0.55 +0.8
1,238,618 - NOLOHH_06570 0.55 +0.6
1,238,621 + NOLOHH_06570 0.56 +0.0
1,238,621 + NOLOHH_06570 0.56 +0.5
1,238,622 - NOLOHH_06570 0.56 -0.4
1,238,625 - NOLOHH_06570 0.57 +1.2
1,238,630 + NOLOHH_06570 0.58 -0.3
1,238,630 + NOLOHH_06570 0.58 -0.2
1,238,631 - NOLOHH_06570 0.58 +0.3
1,238,637 + NOLOHH_06570 0.59 -0.1
1,238,637 + NOLOHH_06570 0.59 -2.2
1,238,637 + NOLOHH_06570 0.59 +0.0
1,238,637 + NOLOHH_06570 0.59 +0.3
1,238,637 + NOLOHH_06570 0.59 +0.3
1,238,637 + NOLOHH_06570 0.59 -0.3
1,238,637 + NOLOHH_06570 0.59 -0.4
1,238,637 + NOLOHH_06570 0.59 -0.5
1,238,637 + NOLOHH_06570 0.59 +0.5
1,238,637 + NOLOHH_06570 0.59 +0.4
1,238,637 + NOLOHH_06570 0.59 +0.4
1,238,638 - NOLOHH_06570 0.59 +0.3
1,238,638 - NOLOHH_06570 0.59 +1.2
1,238,638 - NOLOHH_06570 0.59 +0.6
1,238,638 - NOLOHH_06570 0.59 -1.2
1,238,638 - NOLOHH_06570 0.59 -0.6
1,238,638 - NOLOHH_06570 0.59 +0.7
1,238,638 - NOLOHH_06570 0.59 +0.1
1,238,638 - NOLOHH_06570 0.59 -1.4
1,238,638 - NOLOHH_06570 0.59 -0.2
1,238,639 + NOLOHH_06570 0.59 -0.4
1,238,639 + NOLOHH_06570 0.59 -1.7
1,238,639 + NOLOHH_06570 0.59 +0.4
1,238,639 + NOLOHH_06570 0.59 -0.2
1,238,639 + NOLOHH_06570 0.59 +0.6
1,238,639 + NOLOHH_06570 0.59 +0.4
1,238,639 + NOLOHH_06570 0.59 +0.4
1,238,640 - NOLOHH_06570 0.59 +1.6
1,238,640 - NOLOHH_06570 0.59 +0.2
1,238,677 + NOLOHH_06570 0.66 +3.1
1,238,677 + NOLOHH_06570 0.66 -0.3

Or see this region's nucleotide sequence