Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_06515 and NOLOHH_06520 overlap by 8 nucleotides NOLOHH_06520 and NOLOHH_06525 overlap by 4 nucleotides NOLOHH_06525 and corA are separated by 53 nucleotides
NOLOHH_06515: NOLOHH_06515 - hypothetical protein, at 1,228,628 to 1,228,735
_06515
NOLOHH_06520: NOLOHH_06520 - DUF3289 domain-containing protein, at 1,228,728 to 1,229,576
_06520
NOLOHH_06525: NOLOHH_06525 - DUF943 domain-containing protein, at 1,229,573 to 1,230,052
_06525
NOLOHH_06530: corA - magnesium/cobalt transporter CorA, at 1,230,106 to 1,231,056
corA
Position (kb)
1229
1230
1231 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1229.057 kb on + strand, within NOLOHH_06520 at 1229.264 kb on - strand, within NOLOHH_06520 at 1229.601 kb on + strand at 1229.602 kb on - strand at 1229.628 kb on - strand, within NOLOHH_06525 at 1229.804 kb on - strand, within NOLOHH_06525 at 1229.811 kb on - strand, within NOLOHH_06525 at 1230.104 kb on + strand at 1230.138 kb on - strand at 1230.169 kb on - strand at 1230.263 kb on - strand, within corA at 1230.391 kb on - strand, within corA at 1230.545 kb on + strand, within corA at 1230.546 kb on - strand, within corA at 1230.571 kb on - strand, within corA at 1230.571 kb on - strand, within corA at 1230.571 kb on - strand, within corA at 1230.575 kb on - strand, within corA at 1230.602 kb on + strand, within corA at 1230.602 kb on + strand, within corA at 1230.603 kb on - strand, within corA at 1230.603 kb on - strand, within corA at 1230.669 kb on - strand, within corA at 1230.774 kb on + strand, within corA at 1230.775 kb on - strand, within corA at 1230.775 kb on - strand, within corA at 1230.775 kb on - strand, within corA at 1230.775 kb on - strand, within corA at 1230.775 kb on - strand, within corA at 1230.932 kb on - strand, within corA at 1230.976 kb on + strand at 1230.986 kb on - strand at 1231.030 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 1,229,057 + NOLOHH_06520 0.39 -3.0 1,229,264 - NOLOHH_06520 0.63 -1.9 1,229,601 + +0.1 1,229,602 - +0.2 1,229,628 - NOLOHH_06525 0.11 -0.7 1,229,804 - NOLOHH_06525 0.48 -1.2 1,229,811 - NOLOHH_06525 0.50 -0.8 1,230,104 + +0.2 1,230,138 - -1.4 1,230,169 - -1.7 1,230,263 - corA NOLOHH_06530 0.17 -2.2 1,230,391 - corA NOLOHH_06530 0.30 +0.6 1,230,545 + corA NOLOHH_06530 0.46 -0.8 1,230,546 - corA NOLOHH_06530 0.46 -2.0 1,230,571 - corA NOLOHH_06530 0.49 +1.2 1,230,571 - corA NOLOHH_06530 0.49 +0.5 1,230,571 - corA NOLOHH_06530 0.49 -1.8 1,230,575 - corA NOLOHH_06530 0.49 +1.0 1,230,602 + corA NOLOHH_06530 0.52 -1.8 1,230,602 + corA NOLOHH_06530 0.52 -0.8 1,230,603 - corA NOLOHH_06530 0.52 +0.2 1,230,603 - corA NOLOHH_06530 0.52 -0.4 1,230,669 - corA NOLOHH_06530 0.59 +2.1 1,230,774 + corA NOLOHH_06530 0.70 +1.9 1,230,775 - corA NOLOHH_06530 0.70 +0.2 1,230,775 - corA NOLOHH_06530 0.70 +1.1 1,230,775 - corA NOLOHH_06530 0.70 -0.9 1,230,775 - corA NOLOHH_06530 0.70 +1.1 1,230,775 - corA NOLOHH_06530 0.70 +0.2 1,230,932 - corA NOLOHH_06530 0.87 -2.5 1,230,976 + -0.7 1,230,986 - +1.5 1,231,030 - -0.7
Or see this region's nucleotide sequence