Strain Fitness in Escherichia coli ECOR27 around NOLOHH_06525

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_06515 and NOLOHH_06520 overlap by 8 nucleotidesNOLOHH_06520 and NOLOHH_06525 overlap by 4 nucleotidesNOLOHH_06525 and corA are separated by 53 nucleotides NOLOHH_06515: NOLOHH_06515 - hypothetical protein, at 1,228,628 to 1,228,735 _06515 NOLOHH_06520: NOLOHH_06520 - DUF3289 domain-containing protein, at 1,228,728 to 1,229,576 _06520 NOLOHH_06525: NOLOHH_06525 - DUF943 domain-containing protein, at 1,229,573 to 1,230,052 _06525 NOLOHH_06530: corA - magnesium/cobalt transporter CorA, at 1,230,106 to 1,231,056 corA Position (kb) 1229 1230 1231Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1229.057 kb on + strand, within NOLOHH_06520at 1229.264 kb on - strand, within NOLOHH_06520at 1229.601 kb on + strandat 1229.602 kb on - strandat 1229.628 kb on - strand, within NOLOHH_06525at 1229.804 kb on - strand, within NOLOHH_06525at 1229.811 kb on - strand, within NOLOHH_06525at 1230.104 kb on + strandat 1230.138 kb on - strandat 1230.169 kb on - strandat 1230.263 kb on - strand, within corAat 1230.391 kb on - strand, within corAat 1230.545 kb on + strand, within corAat 1230.546 kb on - strand, within corAat 1230.571 kb on - strand, within corAat 1230.571 kb on - strand, within corAat 1230.571 kb on - strand, within corAat 1230.575 kb on - strand, within corAat 1230.602 kb on + strand, within corAat 1230.602 kb on + strand, within corAat 1230.603 kb on - strand, within corAat 1230.603 kb on - strand, within corAat 1230.669 kb on - strand, within corAat 1230.774 kb on + strand, within corAat 1230.775 kb on - strand, within corAat 1230.775 kb on - strand, within corAat 1230.775 kb on - strand, within corAat 1230.775 kb on - strand, within corAat 1230.775 kb on - strand, within corAat 1230.932 kb on - strand, within corAat 1230.976 kb on + strandat 1230.986 kb on - strandat 1231.030 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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1,229,057 + NOLOHH_06520 0.39 -3.0
1,229,264 - NOLOHH_06520 0.63 -1.9
1,229,601 + +0.1
1,229,602 - +0.2
1,229,628 - NOLOHH_06525 0.11 -0.7
1,229,804 - NOLOHH_06525 0.48 -1.2
1,229,811 - NOLOHH_06525 0.50 -0.8
1,230,104 + +0.2
1,230,138 - -1.4
1,230,169 - -1.7
1,230,263 - corA NOLOHH_06530 0.17 -2.2
1,230,391 - corA NOLOHH_06530 0.30 +0.6
1,230,545 + corA NOLOHH_06530 0.46 -0.8
1,230,546 - corA NOLOHH_06530 0.46 -2.0
1,230,571 - corA NOLOHH_06530 0.49 +1.2
1,230,571 - corA NOLOHH_06530 0.49 +0.5
1,230,571 - corA NOLOHH_06530 0.49 -1.8
1,230,575 - corA NOLOHH_06530 0.49 +1.0
1,230,602 + corA NOLOHH_06530 0.52 -1.8
1,230,602 + corA NOLOHH_06530 0.52 -0.8
1,230,603 - corA NOLOHH_06530 0.52 +0.2
1,230,603 - corA NOLOHH_06530 0.52 -0.4
1,230,669 - corA NOLOHH_06530 0.59 +2.1
1,230,774 + corA NOLOHH_06530 0.70 +1.9
1,230,775 - corA NOLOHH_06530 0.70 +0.2
1,230,775 - corA NOLOHH_06530 0.70 +1.1
1,230,775 - corA NOLOHH_06530 0.70 -0.9
1,230,775 - corA NOLOHH_06530 0.70 +1.1
1,230,775 - corA NOLOHH_06530 0.70 +0.2
1,230,932 - corA NOLOHH_06530 0.87 -2.5
1,230,976 + -0.7
1,230,986 - +1.5
1,231,030 - -0.7

Or see this region's nucleotide sequence