Strain Fitness in Escherichia coli ECOR27 around NOLOHH_05520

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,023,537	+	nudC	NOLOHH_05510	0.78	+0.0
1,023,537	+	nudC	NOLOHH_05510	0.78	+0.0
1,023,537	+	nudC	NOLOHH_05510	0.78	-1.3
1,023,538	-	nudC	NOLOHH_05510	0.78	-0.3
1,023,538	-	nudC	NOLOHH_05510	0.78	-0.5
1,023,538	-	nudC	NOLOHH_05510	0.78	-0.9
1,023,538	-	nudC	NOLOHH_05510	0.78	+0.6
1,023,540	+	nudC	NOLOHH_05510	0.78	-0.0
1,023,577	-	nudC	NOLOHH_05510	0.83	+3.0
1,023,619	+	nudC	NOLOHH_05510	0.89	+0.2
1,023,645	+				-0.9
1,023,646	-				+0.4
1,023,646	-				-0.4
1,023,685	-				-0.1
1,023,696	+				+0.4
1,023,696	+				+0.8
1,023,696	+				+0.1
1,023,697	-				-0.3
1,023,698	+				+0.0
1,023,699	-				+0.3
1,023,707	+				-0.9
1,023,707	+				+0.4
1,023,708	-				+1.0
1,023,708	-				+0.8
1,023,719	+				+0.9
1,023,719	+				+0.7
1,023,719	+				+0.6
1,023,720	-				+0.8
1,023,781	+				+0.3
1,023,782	-				-0.2
1,023,782	-				-0.8
1,023,869	+	rsd	NOLOHH_05515	0.14	+0.5
1,023,869	+	rsd	NOLOHH_05515	0.14	+0.0
1,023,869	+	rsd	NOLOHH_05515	0.14	-0.1
1,023,870	-	rsd	NOLOHH_05515	0.14	+0.8
1,023,875	+	rsd	NOLOHH_05515	0.15	+1.1
1,023,875	+	rsd	NOLOHH_05515	0.15	-2.4
1,023,875	+	rsd	NOLOHH_05515	0.15	+0.3
1,023,875	+	rsd	NOLOHH_05515	0.15	+0.3
1,023,875	+	rsd	NOLOHH_05515	0.15	-0.3
1,023,875	+	rsd	NOLOHH_05515	0.15	+0.7
1,023,875	+	rsd	NOLOHH_05515	0.15	+0.8
1,023,875	+	rsd	NOLOHH_05515	0.15	-0.0
1,023,875	+	rsd	NOLOHH_05515	0.15	+0.8
1,023,876	-	rsd	NOLOHH_05515	0.16	+0.8
1,023,876	-	rsd	NOLOHH_05515	0.16	-0.6
1,023,876	-	rsd	NOLOHH_05515	0.16	-0.2
1,023,876	-	rsd	NOLOHH_05515	0.16	+0.7
1,023,876	-	rsd	NOLOHH_05515	0.16	-0.1
1,023,876	-	rsd	NOLOHH_05515	0.16	-0.0
1,023,876	-	rsd	NOLOHH_05515	0.16	-0.3
1,023,876	-	rsd	NOLOHH_05515	0.16	+1.5
1,023,876	-	rsd	NOLOHH_05515	0.16	+0.2
1,023,879	+	rsd	NOLOHH_05515	0.16	-0.8
1,023,879	+	rsd	NOLOHH_05515	0.16	+0.3
1,023,879	+	rsd	NOLOHH_05515	0.16	+0.3
1,023,879	+	rsd	NOLOHH_05515	0.16	+0.2
1,023,879	+	rsd	NOLOHH_05515	0.16	-0.4
1,023,879	+	rsd	NOLOHH_05515	0.16	+0.4
1,023,880	-	rsd	NOLOHH_05515	0.16	-0.3
1,023,880	-	rsd	NOLOHH_05515	0.16	-0.2
1,023,880	-	rsd	NOLOHH_05515	0.16	+0.5
1,023,880	-	rsd	NOLOHH_05515	0.16	-0.5
1,023,898	+	rsd	NOLOHH_05515	0.20	+0.8
1,023,898	+	rsd	NOLOHH_05515	0.20	+0.1
1,023,899	-	rsd	NOLOHH_05515	0.20	+1.0
1,023,899	-	rsd	NOLOHH_05515	0.20	+0.2
1,023,899	-	rsd	NOLOHH_05515	0.20	+1.0
1,023,901	+	rsd	NOLOHH_05515	0.21	+0.2
1,023,901	+	rsd	NOLOHH_05515	0.21	+0.3
1,023,902	-	rsd	NOLOHH_05515	0.21	+0.2
1,023,902	-	rsd	NOLOHH_05515	0.21	+0.6
1,023,902	-	rsd	NOLOHH_05515	0.21	+1.2
1,023,918	+	rsd	NOLOHH_05515	0.24	-2.6
1,023,919	-	rsd	NOLOHH_05515	0.25	+0.2
1,023,937	+	rsd	NOLOHH_05515	0.28	+0.6
1,023,937	+	rsd	NOLOHH_05515	0.28	+0.3
1,023,937	+	rsd	NOLOHH_05515	0.28	-0.2
1,023,937	+	rsd	NOLOHH_05515	0.28	-3.1
1,023,938	-	rsd	NOLOHH_05515	0.29	+0.2
1,023,938	-	rsd	NOLOHH_05515	0.29	+1.1
1,023,991	+	rsd	NOLOHH_05515	0.40	+0.9
1,023,991	+	rsd	NOLOHH_05515	0.40	-0.1
1,023,991	+	rsd	NOLOHH_05515	0.40	+1.5
1,023,991	+	rsd	NOLOHH_05515	0.40	-3.0
1,023,992	-	rsd	NOLOHH_05515	0.40	+0.9
1,023,992	-	rsd	NOLOHH_05515	0.40	+1.4
1,024,018	+	rsd	NOLOHH_05515	0.45	-1.2
1,024,018	+	rsd	NOLOHH_05515	0.45	-0.6
1,024,018	+	rsd	NOLOHH_05515	0.45	+0.2
1,024,019	-	rsd	NOLOHH_05515	0.45	+0.2
1,024,019	-	rsd	NOLOHH_05515	0.45	+0.0
1,024,019	-	rsd	NOLOHH_05515	0.45	+1.7
1,024,019	-	rsd	NOLOHH_05515	0.45	+0.1
1,024,035	+	rsd	NOLOHH_05515	0.49	-0.1
1,024,035	+	rsd	NOLOHH_05515	0.49	+0.3
1,024,035	+	rsd	NOLOHH_05515	0.49	+0.2
1,024,036	-	rsd	NOLOHH_05515	0.49	-0.4
1,024,117	+	rsd	NOLOHH_05515	0.66	-0.6
1,024,117	+	rsd	NOLOHH_05515	0.66	+0.4
1,024,118	-	rsd	NOLOHH_05515	0.66	-0.6
1,024,118	-	rsd	NOLOHH_05515	0.66	-0.0
1,024,118	-	rsd	NOLOHH_05515	0.66	+0.0
1,024,120	+	rsd	NOLOHH_05515	0.67	-1.1
1,024,120	+	rsd	NOLOHH_05515	0.67	+1.4
1,024,120	+	rsd	NOLOHH_05515	0.67	-0.0
1,024,156	-	rsd	NOLOHH_05515	0.74	+1.2
1,024,227	+	rsd	NOLOHH_05515	0.89	+0.0
1,024,298	+				-0.2
1,024,303	+				-1.6
1,024,351	+				-0.9
1,024,401	+				-0.6
1,024,401	+				-1.2
1,024,402	-				-0.9
1,024,402	-				-0.0
1,024,402	-				-0.4
1,024,423	+				-1.3
1,024,424	-				-1.1
1,024,511	+				-0.3
1,024,511	+				-0.6
1,024,511	+				-1.4
1,024,511	+				-0.6
1,024,511	+				-0.6
1,024,511	+				-1.1
1,024,512	-				-0.6
1,024,512	-				-0.7
1,024,512	-				+0.4
1,024,512	-				-2.7
1,024,512	-				-1.1
1,024,512	-				-5.5
1,024,566	-				-1.5
1,024,611	+				-1.4
1,024,611	+				-0.2
1,024,611	+				-3.0
1,024,611	+				-0.8
1,024,612	-				-0.4
1,024,612	-				-0.3
1,024,613	+				-0.8
1,024,613	+				-2.6
1,024,731	+	thiC	NOLOHH_05520	0.12	-1.1
1,024,861	-	thiC	NOLOHH_05520	0.18	-1.2
1,024,861	-	thiC	NOLOHH_05520	0.18	+0.5
1,024,866	-	thiC	NOLOHH_05520	0.19	-1.7
1,024,915	+	thiC	NOLOHH_05520	0.21	+0.1
1,024,915	+	thiC	NOLOHH_05520	0.21	-0.8
1,024,915	+	thiC	NOLOHH_05520	0.21	-0.8
1,024,916	-	thiC	NOLOHH_05520	0.21	-2.1
1,024,919	-	thiC	NOLOHH_05520	0.21	-1.7
1,024,965	+	thiC	NOLOHH_05520	0.24	-2.6
1,025,021	+	thiC	NOLOHH_05520	0.27	-1.7
1,025,053	+	thiC	NOLOHH_05520	0.29	+0.5
1,025,103	-	thiC	NOLOHH_05520	0.31	-2.0
1,025,193	-	thiC	NOLOHH_05520	0.36	-0.3
1,025,213	-	thiC	NOLOHH_05520	0.37	-2.0
1,025,334	+	thiC	NOLOHH_05520	0.43	-0.3
1,025,335	-	thiC	NOLOHH_05520	0.43	-0.6
1,025,335	-	thiC	NOLOHH_05520	0.43	-1.2
1,025,335	-	thiC	NOLOHH_05520	0.43	-0.8
1,025,336	+	thiC	NOLOHH_05520	0.43	-0.3
1,025,336	+	thiC	NOLOHH_05520	0.43	-1.3
1,025,337	-	thiC	NOLOHH_05520	0.44	-1.6
1,025,401	-	thiC	NOLOHH_05520	0.47	-1.9
1,025,441	+	thiC	NOLOHH_05520	0.49	-1.2
1,025,442	-	thiC	NOLOHH_05520	0.49	-1.5
1,025,496	+	thiC	NOLOHH_05520	0.52	-2.0
1,025,497	-	thiC	NOLOHH_05520	0.52	-2.4
1,025,497	-	thiC	NOLOHH_05520	0.52	-3.7
1,025,497	-	thiC	NOLOHH_05520	0.52	-0.1
1,025,518	+	thiC	NOLOHH_05520	0.53	-3.1
1,025,519	-	thiC	NOLOHH_05520	0.53	-0.6
1,025,529	+	thiC	NOLOHH_05520	0.54	-1.9
1,025,628	+	thiC	NOLOHH_05520	0.59	+0.1
1,025,628	+	thiC	NOLOHH_05520	0.59	-2.2
1,025,667	+	thiC	NOLOHH_05520	0.61	-0.8
1,025,667	+	thiC	NOLOHH_05520	0.61	-1.9
1,025,711	+	thiC	NOLOHH_05520	0.63	-0.2
1,025,754	-	thiC	NOLOHH_05520	0.66	-1.6
1,025,754	-	thiC	NOLOHH_05520	0.66	-4.0
1,025,754	-	thiC	NOLOHH_05520	0.66	-0.2
1,025,788	-	thiC	NOLOHH_05520	0.67	-1.5
1,025,849	+	thiC	NOLOHH_05520	0.71	-1.3
1,025,863	+	thiC	NOLOHH_05520	0.71	-0.7
1,025,864	-	thiC	NOLOHH_05520	0.71	-3.1
1,025,864	-	thiC	NOLOHH_05520	0.71	-0.7
1,025,864	-	thiC	NOLOHH_05520	0.71	-0.3
1,025,928	+	thiC	NOLOHH_05520	0.75	-0.8
1,025,994	+	thiC	NOLOHH_05520	0.78	-0.2
1,025,995	-	thiC	NOLOHH_05520	0.78	-2.9
1,025,995	-	thiC	NOLOHH_05520	0.78	-2.8
1,025,995	-	thiC	NOLOHH_05520	0.78	-3.6
1,026,034	-	thiC	NOLOHH_05520	0.80	-0.7
1,026,042	-	thiC	NOLOHH_05520	0.81	+0.6
1,026,042	-	thiC	NOLOHH_05520	0.81	-2.0
1,026,042	-	thiC	NOLOHH_05520	0.81	-2.1
1,026,053	+	thiC	NOLOHH_05520	0.81	-0.3
1,026,060	+	thiC	NOLOHH_05520	0.82	-2.6
1,026,060	+	thiC	NOLOHH_05520	0.82	-2.8
1,026,060	+	thiC	NOLOHH_05520	0.82	-0.0
1,026,060	+	thiC	NOLOHH_05520	0.82	-0.1
1,026,061	-	thiC	NOLOHH_05520	0.82	-0.5
1,026,061	-	thiC	NOLOHH_05520	0.82	-0.0
1,026,061	-	thiC	NOLOHH_05520	0.82	-1.3
1,026,061	-	thiC	NOLOHH_05520	0.82	-0.8
1,026,062	+	thiC	NOLOHH_05520	0.82	-1.8
1,026,062	+	thiC	NOLOHH_05520	0.82	-2.1
1,026,062	+	thiC	NOLOHH_05520	0.82	-1.5
1,026,063	-	thiC	NOLOHH_05520	0.82	-0.6
1,026,063	-	thiC	NOLOHH_05520	0.82	-2.1
1,026,170	+	thiC	NOLOHH_05520	0.87	-1.2
1,026,170	+	thiC	NOLOHH_05520	0.87	-1.4
1,026,171	-	thiC	NOLOHH_05520	0.88	-4.4
1,026,236	+				-1.1
1,026,347	+				-2.0
1,026,384	+				-0.9
1,026,384	+				-1.1
1,026,410	+				-3.5
1,026,432	+				-1.1
1,026,452	+				-1.3
1,026,453	-				+0.0
1,026,471	+	thiE	NOLOHH_05525	0.10	-1.9
1,026,505	-	thiE	NOLOHH_05525	0.15	-0.6
1,026,505	-	thiE	NOLOHH_05525	0.15	+0.4
1,026,505	-	thiE	NOLOHH_05525	0.15	-2.0
1,026,508	+	thiE	NOLOHH_05525	0.16	-0.7
1,026,509	-	thiE	NOLOHH_05525	0.16	+0.1
1,026,509	-	thiE	NOLOHH_05525	0.16	-0.8
1,026,509	-	thiE	NOLOHH_05525	0.16	-1.0
1,026,509	-	thiE	NOLOHH_05525	0.16	-3.0
1,026,509	-	thiE	NOLOHH_05525	0.16	+0.9
1,026,519	+	thiE	NOLOHH_05525	0.18	-2.4
1,026,519	+	thiE	NOLOHH_05525	0.18	-0.2
1,026,647	+	thiE	NOLOHH_05525	0.38	-0.5
1,026,648	-	thiE	NOLOHH_05525	0.38	-1.3
1,026,648	-	thiE	NOLOHH_05525	0.38	-1.9
1,026,648	-	thiE	NOLOHH_05525	0.38	-1.6
1,026,779	+	thiE	NOLOHH_05525	0.58	-1.1
1,026,779	+	thiE	NOLOHH_05525	0.58	-3.3
1,026,779	+	thiE	NOLOHH_05525	0.58	-0.9
1,026,779	+	thiE	NOLOHH_05525	0.58	-0.8
1,026,780	-	thiE	NOLOHH_05525	0.59	-0.7
1,026,780	-	thiE	NOLOHH_05525	0.59	+0.5
1,026,780	-	thiE	NOLOHH_05525	0.59	-1.2
1,026,780	-	thiE	NOLOHH_05525	0.59	-1.5
1,026,781	+	thiE	NOLOHH_05525	0.59	-2.2
1,026,782	-	thiE	NOLOHH_05525	0.59	-1.1
1,026,973	+	thiE	NOLOHH_05525	0.89	-0.6
1,026,973	+	thiE	NOLOHH_05525	0.89	-4.1
1,026,974	-	thiE	NOLOHH_05525	0.89	-0.1
1,027,060	-				-0.0
1,027,171	-	thiF	NOLOHH_05530	0.18	-2.5
1,027,229	-	thiF	NOLOHH_05530	0.26	-1.1
1,027,229	-	thiF	NOLOHH_05530	0.26	-3.1
1,027,229	-	thiF	NOLOHH_05530	0.26	-0.9
1,027,229	-	thiF	NOLOHH_05530	0.26	+0.1
1,027,257	-	thiF	NOLOHH_05530	0.29	-1.2
1,027,257	-	thiF	NOLOHH_05530	0.29	-0.5
1,027,342	+	thiF	NOLOHH_05530	0.41	-3.7
1,027,342	+	thiF	NOLOHH_05530	0.41	-3.1
1,027,342	+	thiF	NOLOHH_05530	0.41	-2.1
1,027,342	+	thiF	NOLOHH_05530	0.41	-0.9
1,027,342	+	thiF	NOLOHH_05530	0.41	-2.1
1,027,342	+	thiF	NOLOHH_05530	0.41	-0.9
1,027,343	-	thiF	NOLOHH_05530	0.41	+0.3
1,027,343	-	thiF	NOLOHH_05530	0.41	-3.2
1,027,343	-	thiF	NOLOHH_05530	0.41	-0.9
1,027,343	-	thiF	NOLOHH_05530	0.41	-2.5
1,027,343	-	thiF	NOLOHH_05530	0.41	-0.5
1,027,343	-	thiF	NOLOHH_05530	0.41	+0.3