Strain Fitness in Escherichia coli ECOR27 around NOLOHH_05380
Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Casamino-acids |
---|---|---|---|---|---|
remove | |||||
993,082 | - | yjbB | NOLOHH_05375 | 0.55 | -0.4 |
993,169 | - | yjbB | NOLOHH_05375 | 0.60 | +0.9 |
993,207 | + | yjbB | NOLOHH_05375 | 0.63 | -0.2 |
993,208 | - | yjbB | NOLOHH_05375 | 0.63 | -0.5 |
993,241 | + | yjbB | NOLOHH_05375 | 0.65 | +0.3 |
993,241 | + | yjbB | NOLOHH_05375 | 0.65 | -0.1 |
993,241 | + | yjbB | NOLOHH_05375 | 0.65 | +0.7 |
993,242 | - | yjbB | NOLOHH_05375 | 0.65 | -1.2 |
993,242 | - | yjbB | NOLOHH_05375 | 0.65 | -1.0 |
993,242 | - | yjbB | NOLOHH_05375 | 0.65 | -0.5 |
993,260 | + | yjbB | NOLOHH_05375 | 0.66 | -0.5 |
993,261 | - | yjbB | NOLOHH_05375 | 0.66 | +0.9 |
993,261 | - | yjbB | NOLOHH_05375 | 0.66 | -0.4 |
993,484 | - | yjbB | NOLOHH_05375 | 0.80 | -2.6 |
993,484 | - | yjbB | NOLOHH_05375 | 0.80 | -0.8 |
993,487 | + | yjbB | NOLOHH_05375 | 0.80 | +0.0 |
993,487 | + | yjbB | NOLOHH_05375 | 0.80 | +0.4 |
993,506 | - | yjbB | NOLOHH_05375 | 0.81 | +0.4 |
993,506 | - | yjbB | NOLOHH_05375 | 0.81 | +0.3 |
993,506 | - | yjbB | NOLOHH_05375 | 0.81 | -1.5 |
993,633 | + | yjbB | NOLOHH_05375 | 0.89 | +0.0 |
993,759 | + | -0.9 | |||
993,760 | - | +0.5 | |||
993,760 | - | +1.0 | |||
993,760 | - | +1.5 | |||
993,760 | - | +0.0 | |||
993,760 | - | -0.4 | |||
993,839 | + | -0.4 | |||
993,839 | + | +0.2 | |||
993,839 | + | -0.3 | |||
993,841 | + | +0.0 | |||
993,841 | + | +0.2 | |||
993,841 | + | +0.6 | |||
993,841 | + | +0.3 | |||
993,841 | + | +0.2 | |||
993,841 | + | +0.4 | |||
993,841 | + | +0.8 | |||
993,841 | + | +0.5 | |||
993,842 | - | +0.1 | |||
993,842 | - | -0.6 | |||
993,842 | - | -1.6 | |||
993,842 | - | +0.4 | |||
993,842 | - | -0.6 | |||
993,842 | - | -0.7 | |||
993,842 | - | +0.1 | |||
993,842 | - | +0.2 | |||
993,842 | - | -0.2 | |||
993,842 | - | -0.9 | |||
993,842 | - | +0.6 | |||
993,842 | - | +0.8 | |||
993,842 | - | +1.5 | |||
993,842 | - | -1.9 | |||
993,842 | - | -0.9 | |||
993,898 | + | +0.9 | |||
993,898 | + | +0.3 | |||
993,898 | + | -0.1 | |||
993,930 | - | -0.3 | |||
993,955 | - | +0.3 | |||
993,956 | + | +0.5 | |||
993,956 | + | -2.4 | |||
993,956 | + | +0.7 | |||
993,956 | + | +1.0 | |||
993,957 | - | -0.6 | |||
993,957 | - | +0.5 | |||
993,957 | - | -0.4 | |||
993,957 | - | -0.2 | |||
993,957 | - | +0.1 | |||
993,957 | - | +0.5 | |||
993,957 | - | +0.2 | |||
993,957 | - | +0.1 | |||
993,967 | + | -0.2 | |||
993,970 | + | -0.6 | |||
993,970 | + | +0.2 | |||
993,971 | - | +0.2 | |||
993,971 | - | +0.9 | |||
993,973 | + | -0.1 | |||
993,973 | + | -0.4 | |||
994,012 | - | +0.2 | |||
994,095 | + | +0.5 | |||
994,096 | - | -0.9 | |||
994,112 | + | +0.0 | |||
994,112 | + | -0.8 | |||
994,112 | + | -0.3 | |||
994,112 | + | +0.0 | |||
994,113 | - | +0.0 | |||
994,113 | - | +0.8 | |||
994,154 | + | -0.3 | |||
994,154 | + | -1.1 | |||
994,155 | - | +0.4 | |||
994,155 | - | +0.6 | |||
994,179 | - | +0.5 | |||
994,179 | - | -0.6 | |||
994,240 | - | +0.6 | |||
994,331 | + | -0.0 | |||
994,332 | - | -1.3 | |||
994,380 | - | +0.1 | |||
994,389 | - | +0.2 | |||
994,389 | - | -0.0 | |||
994,396 | - | -0.6 | |||
994,472 | + | metH | NOLOHH_05380 | 0.12 | +0.7 |
994,472 | + | metH | NOLOHH_05380 | 0.12 | +1.4 |
994,473 | - | metH | NOLOHH_05380 | 0.12 | +0.9 |
994,473 | - | metH | NOLOHH_05380 | 0.12 | +0.3 |
994,473 | - | metH | NOLOHH_05380 | 0.12 | -0.4 |
994,550 | + | metH | NOLOHH_05380 | 0.14 | +0.2 |
994,550 | + | metH | NOLOHH_05380 | 0.14 | +0.5 |
994,550 | + | metH | NOLOHH_05380 | 0.14 | -2.9 |
994,551 | - | metH | NOLOHH_05380 | 0.14 | +0.5 |
994,551 | - | metH | NOLOHH_05380 | 0.14 | -0.2 |
994,598 | + | metH | NOLOHH_05380 | 0.15 | -0.2 |
994,599 | - | metH | NOLOHH_05380 | 0.15 | -0.1 |
994,599 | - | metH | NOLOHH_05380 | 0.15 | +0.3 |
994,599 | - | metH | NOLOHH_05380 | 0.15 | +0.3 |
994,680 | - | metH | NOLOHH_05380 | 0.17 | +0.1 |
994,759 | + | metH | NOLOHH_05380 | 0.20 | +0.4 |
994,760 | - | metH | NOLOHH_05380 | 0.20 | +0.4 |
994,760 | - | metH | NOLOHH_05380 | 0.20 | -0.5 |
994,841 | + | metH | NOLOHH_05380 | 0.22 | -0.9 |
994,889 | + | metH | NOLOHH_05380 | 0.23 | +0.2 |
994,889 | + | metH | NOLOHH_05380 | 0.23 | +0.8 |
994,889 | + | metH | NOLOHH_05380 | 0.23 | -0.4 |
994,889 | + | metH | NOLOHH_05380 | 0.23 | +0.4 |
994,889 | + | metH | NOLOHH_05380 | 0.23 | +1.0 |
994,890 | - | metH | NOLOHH_05380 | 0.23 | +0.4 |
994,890 | - | metH | NOLOHH_05380 | 0.23 | -0.3 |
994,890 | - | metH | NOLOHH_05380 | 0.23 | +0.1 |
994,890 | - | metH | NOLOHH_05380 | 0.23 | +0.5 |
994,893 | + | metH | NOLOHH_05380 | 0.23 | +0.7 |
995,031 | + | metH | NOLOHH_05380 | 0.27 | +0.1 |
995,046 | + | metH | NOLOHH_05380 | 0.27 | -1.9 |
995,046 | + | metH | NOLOHH_05380 | 0.27 | -2.9 |
995,047 | - | metH | NOLOHH_05380 | 0.27 | -0.2 |
995,047 | - | metH | NOLOHH_05380 | 0.27 | +1.0 |
995,047 | - | metH | NOLOHH_05380 | 0.27 | +0.1 |
995,047 | - | metH | NOLOHH_05380 | 0.27 | +0.7 |
995,050 | + | metH | NOLOHH_05380 | 0.28 | -0.1 |
995,149 | + | metH | NOLOHH_05380 | 0.30 | -0.5 |
995,149 | + | metH | NOLOHH_05380 | 0.30 | +0.4 |
995,149 | + | metH | NOLOHH_05380 | 0.30 | -0.7 |
995,149 | + | metH | NOLOHH_05380 | 0.30 | +0.1 |
995,150 | - | metH | NOLOHH_05380 | 0.30 | -0.7 |
995,150 | - | metH | NOLOHH_05380 | 0.30 | -0.2 |
995,150 | - | metH | NOLOHH_05380 | 0.30 | -0.1 |
995,150 | - | metH | NOLOHH_05380 | 0.30 | -0.8 |
995,150 | - | metH | NOLOHH_05380 | 0.30 | +0.4 |
995,150 | - | metH | NOLOHH_05380 | 0.30 | +0.3 |
995,150 | - | metH | NOLOHH_05380 | 0.30 | +0.7 |
995,153 | + | metH | NOLOHH_05380 | 0.30 | +0.8 |
995,153 | + | metH | NOLOHH_05380 | 0.30 | +0.1 |
995,153 | + | metH | NOLOHH_05380 | 0.30 | +1.5 |
995,153 | + | metH | NOLOHH_05380 | 0.30 | +0.4 |
995,153 | + | metH | NOLOHH_05380 | 0.30 | +1.3 |
995,153 | + | metH | NOLOHH_05380 | 0.30 | +0.2 |
995,153 | + | metH | NOLOHH_05380 | 0.30 | -0.2 |
995,153 | + | metH | NOLOHH_05380 | 0.30 | -0.8 |
995,153 | + | metH | NOLOHH_05380 | 0.30 | +0.7 |
995,154 | - | metH | NOLOHH_05380 | 0.30 | +0.6 |
995,154 | - | metH | NOLOHH_05380 | 0.30 | +0.0 |
995,154 | - | metH | NOLOHH_05380 | 0.30 | +0.2 |
995,154 | - | metH | NOLOHH_05380 | 0.30 | -2.4 |
995,154 | - | metH | NOLOHH_05380 | 0.30 | +0.4 |
995,154 | - | metH | NOLOHH_05380 | 0.30 | +0.7 |
995,154 | - | metH | NOLOHH_05380 | 0.30 | +0.3 |
995,154 | - | metH | NOLOHH_05380 | 0.30 | -0.3 |
995,154 | - | metH | NOLOHH_05380 | 0.30 | -0.2 |
995,172 | - | metH | NOLOHH_05380 | 0.31 | -0.0 |
995,172 | - | metH | NOLOHH_05380 | 0.31 | -0.4 |
995,397 | - | metH | NOLOHH_05380 | 0.37 | -0.5 |
995,397 | - | metH | NOLOHH_05380 | 0.37 | -0.0 |
995,403 | + | metH | NOLOHH_05380 | 0.37 | +1.1 |
995,403 | + | metH | NOLOHH_05380 | 0.37 | +0.3 |
995,403 | + | metH | NOLOHH_05380 | 0.37 | -1.5 |
995,404 | - | metH | NOLOHH_05380 | 0.37 | -3.8 |
995,404 | - | metH | NOLOHH_05380 | 0.37 | +0.3 |
995,404 | - | metH | NOLOHH_05380 | 0.37 | -0.6 |
995,404 | - | metH | NOLOHH_05380 | 0.37 | +1.0 |
995,529 | - | metH | NOLOHH_05380 | 0.41 | -0.4 |
995,529 | - | metH | NOLOHH_05380 | 0.41 | -0.2 |
995,529 | - | metH | NOLOHH_05380 | 0.41 | -1.1 |
995,807 | + | metH | NOLOHH_05380 | 0.48 | +0.4 |
995,808 | - | metH | NOLOHH_05380 | 0.48 | -0.1 |
995,857 | - | metH | NOLOHH_05380 | 0.49 | -0.3 |
995,959 | - | metH | NOLOHH_05380 | 0.52 | +0.1 |
995,963 | + | metH | NOLOHH_05380 | 0.52 | -0.6 |
995,963 | + | metH | NOLOHH_05380 | 0.52 | +0.1 |
995,963 | + | metH | NOLOHH_05380 | 0.52 | +0.1 |
995,963 | + | metH | NOLOHH_05380 | 0.52 | +0.3 |
995,964 | - | metH | NOLOHH_05380 | 0.52 | +0.4 |
995,964 | - | metH | NOLOHH_05380 | 0.52 | +0.9 |
995,964 | - | metH | NOLOHH_05380 | 0.52 | -0.7 |
995,966 | + | metH | NOLOHH_05380 | 0.52 | +0.6 |
995,967 | - | metH | NOLOHH_05380 | 0.52 | -0.0 |
996,031 | - | metH | NOLOHH_05380 | 0.54 | -0.1 |
996,034 | + | metH | NOLOHH_05380 | 0.54 | -0.7 |
996,034 | + | metH | NOLOHH_05380 | 0.54 | -0.5 |
996,107 | + | metH | NOLOHH_05380 | 0.56 | +0.6 |
996,108 | - | metH | NOLOHH_05380 | 0.56 | +0.3 |
996,165 | + | metH | NOLOHH_05380 | 0.58 | -0.3 |
996,165 | + | metH | NOLOHH_05380 | 0.58 | -2.8 |
996,166 | - | metH | NOLOHH_05380 | 0.58 | +0.5 |
996,275 | - | metH | NOLOHH_05380 | 0.61 | -0.4 |
996,351 | + | metH | NOLOHH_05380 | 0.63 | +0.7 |
996,351 | + | metH | NOLOHH_05380 | 0.63 | +0.3 |
996,351 | + | metH | NOLOHH_05380 | 0.63 | -0.2 |
996,352 | - | metH | NOLOHH_05380 | 0.63 | -0.1 |
996,352 | - | metH | NOLOHH_05380 | 0.63 | +0.5 |
996,352 | - | metH | NOLOHH_05380 | 0.63 | -0.6 |
996,357 | + | metH | NOLOHH_05380 | 0.63 | -0.1 |
996,358 | - | metH | NOLOHH_05380 | 0.63 | +0.3 |
996,358 | - | metH | NOLOHH_05380 | 0.63 | +2.1 |
996,358 | - | metH | NOLOHH_05380 | 0.63 | -0.3 |
996,660 | + | metH | NOLOHH_05380 | 0.71 | +0.6 |
996,746 | - | metH | NOLOHH_05380 | 0.74 | +0.1 |
996,768 | + | metH | NOLOHH_05380 | 0.74 | -1.0 |
996,768 | + | metH | NOLOHH_05380 | 0.74 | -0.9 |
996,769 | - | metH | NOLOHH_05380 | 0.74 | +0.9 |
996,769 | - | metH | NOLOHH_05380 | 0.74 | +0.2 |
996,835 | + | metH | NOLOHH_05380 | 0.76 | -0.2 |
996,835 | + | metH | NOLOHH_05380 | 0.76 | -1.4 |
996,835 | + | metH | NOLOHH_05380 | 0.76 | +1.0 |
996,836 | - | metH | NOLOHH_05380 | 0.76 | +0.1 |
996,836 | - | metH | NOLOHH_05380 | 0.76 | -0.5 |
996,836 | - | metH | NOLOHH_05380 | 0.76 | +0.7 |
996,836 | - | metH | NOLOHH_05380 | 0.76 | -0.6 |
996,836 | - | metH | NOLOHH_05380 | 0.76 | +0.2 |
996,836 | - | metH | NOLOHH_05380 | 0.76 | +0.3 |
996,917 | + | metH | NOLOHH_05380 | 0.78 | +0.7 |
996,917 | + | metH | NOLOHH_05380 | 0.78 | +1.5 |
996,917 | + | metH | NOLOHH_05380 | 0.78 | -0.7 |
996,918 | - | metH | NOLOHH_05380 | 0.78 | +0.8 |
996,918 | - | metH | NOLOHH_05380 | 0.78 | -0.8 |
996,918 | - | metH | NOLOHH_05380 | 0.78 | +0.8 |
996,950 | + | metH | NOLOHH_05380 | 0.79 | -1.4 |
997,025 | + | metH | NOLOHH_05380 | 0.81 | -0.6 |
997,092 | + | metH | NOLOHH_05380 | 0.83 | -0.3 |
997,092 | + | metH | NOLOHH_05380 | 0.83 | +1.5 |
997,260 | + | metH | NOLOHH_05380 | 0.88 | -0.1 |
997,282 | + | metH | NOLOHH_05380 | 0.88 | -0.4 |
997,282 | + | metH | NOLOHH_05380 | 0.88 | -0.4 |
997,283 | - | metH | NOLOHH_05380 | 0.88 | +0.3 |
997,296 | + | metH | NOLOHH_05380 | 0.88 | -1.2 |
997,297 | - | metH | NOLOHH_05380 | 0.89 | +0.2 |
997,297 | - | metH | NOLOHH_05380 | 0.89 | +0.7 |
997,337 | + | metH | NOLOHH_05380 | 0.90 | +0.4 |
997,338 | - | metH | NOLOHH_05380 | 0.90 | +0.1 |
997,468 | - | +1.3 | |||
997,508 | + | -0.1 | |||
997,632 | - | +1.2 | |||
997,632 | - | +0.3 | |||
997,674 | + | -1.4 | |||
997,674 | + | -0.3 | |||
997,674 | + | -0.6 | |||
997,675 | - | +0.2 | |||
997,684 | + | +0.6 | |||
997,685 | - | +0.6 | |||
997,685 | - | -0.4 | |||
997,750 | - | -1.8 | |||
997,752 | + | +0.2 | |||
997,771 | - | -0.3 | |||
997,779 | - | +0.9 | |||
997,793 | + | +0.8 | |||
997,857 | + | +0.5 | |||
997,858 | - | -0.2 | |||
997,858 | - | -0.2 | |||
997,865 | + | -0.8 | |||
997,865 | + | +1.2 | |||
997,866 | - | +0.5 | |||
997,866 | - | -0.5 | |||
997,866 | - | +0.5 | |||
997,866 | - | -0.2 | |||
997,866 | - | +0.1 | |||
998,185 | + | iclR | NOLOHH_05385 | 0.32 | +0.8 |
998,253 | + | iclR | NOLOHH_05385 | 0.40 | +0.1 |
998,253 | + | iclR | NOLOHH_05385 | 0.40 | -1.4 |
998,281 | + | iclR | NOLOHH_05385 | 0.44 | +0.1 |
998,281 | + | iclR | NOLOHH_05385 | 0.44 | +0.2 |
998,317 | + | iclR | NOLOHH_05385 | 0.48 | -0.4 |
998,331 | + | iclR | NOLOHH_05385 | 0.50 | -0.1 |
998,331 | + | iclR | NOLOHH_05385 | 0.50 | -1.0 |
998,331 | + | iclR | NOLOHH_05385 | 0.50 | -0.3 |
998,338 | + | iclR | NOLOHH_05385 | 0.51 | +0.1 |
998,338 | + | iclR | NOLOHH_05385 | 0.51 | +1.9 |
998,338 | + | iclR | NOLOHH_05385 | 0.51 | -1.0 |
998,338 | + | iclR | NOLOHH_05385 | 0.51 | -1.1 |
998,338 | + | iclR | NOLOHH_05385 | 0.51 | +1.0 |
998,339 | - | iclR | NOLOHH_05385 | 0.51 | +0.7 |
998,466 | + | iclR | NOLOHH_05385 | 0.66 | +0.5 |
998,466 | + | iclR | NOLOHH_05385 | 0.66 | -2.1 |
998,466 | + | iclR | NOLOHH_05385 | 0.66 | -0.1 |
998,466 | + | iclR | NOLOHH_05385 | 0.66 | -0.5 |
998,474 | + | iclR | NOLOHH_05385 | 0.67 | +0.0 |
998,474 | + | iclR | NOLOHH_05385 | 0.67 | -1.1 |
998,474 | + | iclR | NOLOHH_05385 | 0.67 | +0.8 |
998,474 | + | iclR | NOLOHH_05385 | 0.67 | +0.6 |
998,474 | + | iclR | NOLOHH_05385 | 0.67 | +0.7 |
998,474 | + | iclR | NOLOHH_05385 | 0.67 | -0.4 |
998,656 | + | iclR | NOLOHH_05385 | 0.89 | -1.8 |
998,656 | + | iclR | NOLOHH_05385 | 0.89 | +0.1 |
998,659 | + | iclR | NOLOHH_05385 | 0.90 | -0.2 |
Or see this region's nucleotide sequence