Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjeH and fxsA are separated by 15 nucleotides fxsA and aspA are separated by 336 nucleotides aspA and NOLOHH_04700 are separated by 36 nucleotides NOLOHH_04700 and dcuA are separated by 51 nucleotides
NOLOHH_04685: yjeH - L-methionine/branched-chain amino acid transporter, at 849,209 to 850,465
yjeH
NOLOHH_04690: fxsA - membrane protein FxsA, at 850,481 to 850,957
fxsA
NOLOHH_04695: aspA - aspartate ammonia-lyase, at 851,294 to 852,730
aspA
NOLOHH_04700: NOLOHH_04700 - URF 1, at 852,767 to 852,796
_04700
NOLOHH_04705: dcuA - anaerobic C4-dicarboxylate transporter DcuA, at 852,848 to 854,149
dcuA
Position (kb) 851
852
853 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 850.297 kb on + strand, within yjeH at 850.297 kb on + strand, within yjeH at 850.347 kb on + strand at 850.348 kb on - strand at 850.348 kb on - strand at 850.348 kb on - strand at 850.359 kb on + strand at 850.455 kb on + strand at 850.463 kb on + strand at 850.463 kb on + strand at 850.464 kb on - strand at 850.464 kb on - strand at 850.701 kb on - strand, within fxsA at 850.847 kb on + strand, within fxsA at 850.848 kb on - strand, within fxsA at 850.848 kb on - strand, within fxsA at 850.848 kb on - strand, within fxsA at 850.849 kb on + strand, within fxsA at 850.850 kb on - strand, within fxsA at 850.880 kb on + strand, within fxsA at 850.881 kb on - strand, within fxsA at 850.881 kb on - strand, within fxsA at 850.881 kb on - strand, within fxsA at 850.915 kb on + strand at 850.917 kb on + strand at 850.917 kb on + strand at 850.924 kb on - strand at 850.924 kb on - strand at 850.924 kb on - strand at 850.924 kb on - strand at 850.971 kb on - strand at 850.973 kb on + strand at 850.973 kb on + strand at 850.973 kb on + strand at 851.025 kb on + strand at 851.026 kb on - strand at 851.026 kb on - strand at 851.026 kb on - strand at 851.026 kb on - strand at 851.026 kb on - strand at 851.027 kb on + strand at 851.067 kb on + strand at 851.110 kb on + strand at 851.117 kb on + strand at 851.118 kb on - strand at 851.138 kb on + strand at 851.139 kb on - strand at 851.153 kb on + strand at 851.154 kb on - strand at 851.178 kb on - strand at 851.241 kb on + strand at 851.241 kb on + strand at 851.241 kb on + strand at 851.242 kb on - strand at 851.242 kb on - strand at 851.242 kb on - strand at 851.242 kb on - strand at 851.243 kb on + strand at 851.243 kb on + strand at 851.243 kb on + strand at 851.243 kb on + strand at 851.244 kb on - strand at 851.244 kb on - strand at 851.244 kb on - strand at 851.244 kb on - strand at 851.357 kb on + strand at 851.357 kb on + strand at 851.358 kb on - strand at 851.358 kb on - strand at 851.358 kb on - strand at 851.360 kb on + strand at 851.396 kb on + strand at 851.396 kb on + strand at 851.397 kb on - strand at 851.397 kb on - strand at 851.398 kb on + strand at 851.423 kb on - strand at 851.500 kb on + strand, within aspA at 851.500 kb on + strand, within aspA at 851.585 kb on + strand, within aspA at 851.586 kb on - strand, within aspA at 851.602 kb on + strand, within aspA at 851.602 kb on + strand, within aspA at 851.603 kb on - strand, within aspA at 851.610 kb on + strand, within aspA at 851.641 kb on + strand, within aspA at 851.678 kb on + strand, within aspA at 851.679 kb on - strand, within aspA at 851.684 kb on + strand, within aspA at 851.762 kb on + strand, within aspA at 851.762 kb on + strand, within aspA at 851.762 kb on + strand, within aspA at 851.776 kb on + strand, within aspA at 851.776 kb on + strand, within aspA at 851.784 kb on + strand, within aspA at 851.822 kb on - strand, within aspA at 851.953 kb on + strand, within aspA at 851.954 kb on - strand, within aspA at 851.978 kb on - strand, within aspA at 852.026 kb on + strand, within aspA at 852.078 kb on + strand, within aspA at 852.122 kb on + strand, within aspA at 852.122 kb on + strand, within aspA at 852.123 kb on - strand, within aspA at 852.123 kb on - strand, within aspA at 852.123 kb on - strand, within aspA at 852.123 kb on - strand, within aspA at 852.123 kb on - strand, within aspA at 852.123 kb on - strand, within aspA at 852.127 kb on + strand, within aspA at 852.128 kb on - strand, within aspA at 852.128 kb on - strand, within aspA at 852.272 kb on - strand, within aspA at 852.343 kb on + strand, within aspA at 852.382 kb on + strand, within aspA at 852.444 kb on - strand, within aspA at 852.482 kb on - strand, within aspA at 852.509 kb on + strand, within aspA at 852.509 kb on + strand, within aspA at 852.510 kb on - strand, within aspA at 852.530 kb on - strand, within aspA at 852.533 kb on + strand, within aspA at 852.533 kb on + strand, within aspA at 852.533 kb on + strand, within aspA at 852.607 kb on - strand at 852.693 kb on - strand at 852.707 kb on + strand at 852.707 kb on + strand at 852.709 kb on + strand at 852.710 kb on - strand at 852.729 kb on - strand at 852.742 kb on - strand at 852.744 kb on + strand at 852.744 kb on + strand at 852.744 kb on + strand at 852.750 kb on + strand at 852.751 kb on - strand at 852.795 kb on - strand at 852.848 kb on - strand at 852.848 kb on - strand at 852.852 kb on + strand at 852.853 kb on - strand at 852.853 kb on - strand at 852.853 kb on - strand at 852.853 kb on - strand at 852.853 kb on - strand at 852.858 kb on + strand at 852.858 kb on + strand at 852.859 kb on - strand at 852.870 kb on + strand at 852.871 kb on - strand at 852.871 kb on - strand at 852.912 kb on + strand at 852.912 kb on + strand at 852.912 kb on + strand at 852.912 kb on + strand at 852.912 kb on + strand at 852.913 kb on - strand at 852.913 kb on - strand at 852.913 kb on - strand at 852.913 kb on - strand at 852.913 kb on - strand at 852.913 kb on - strand at 852.916 kb on + strand at 852.917 kb on - strand at 852.967 kb on + strand at 853.003 kb on + strand, within dcuA at 853.024 kb on + strand, within dcuA at 853.058 kb on + strand, within dcuA at 853.058 kb on + strand, within dcuA at 853.103 kb on + strand, within dcuA at 853.104 kb on - strand, within dcuA at 853.104 kb on - strand, within dcuA at 853.133 kb on + strand, within dcuA at 853.134 kb on - strand, within dcuA at 853.144 kb on + strand, within dcuA at 853.145 kb on - strand, within dcuA at 853.167 kb on + strand, within dcuA at 853.167 kb on + strand, within dcuA at 853.167 kb on + strand, within dcuA at 853.167 kb on + strand, within dcuA at 853.167 kb on + strand, within dcuA at 853.167 kb on + strand, within dcuA at 853.168 kb on - strand, within dcuA at 853.168 kb on - strand, within dcuA at 853.168 kb on - strand, within dcuA at 853.168 kb on - strand, within dcuA at 853.240 kb on + strand, within dcuA at 853.301 kb on + strand, within dcuA at 853.301 kb on + strand, within dcuA at 853.301 kb on + strand, within dcuA at 853.301 kb on + strand, within dcuA at 853.302 kb on - strand, within dcuA at 853.302 kb on - strand, within dcuA at 853.337 kb on + strand, within dcuA at 853.338 kb on - strand, within dcuA at 853.408 kb on + strand, within dcuA at 853.409 kb on - strand, within dcuA at 853.445 kb on + strand, within dcuA at 853.549 kb on - strand, within dcuA at 853.562 kb on - strand, within dcuA at 853.565 kb on + strand, within dcuA at 853.565 kb on + strand, within dcuA at 853.566 kb on - strand, within dcuA at 853.679 kb on - strand, within dcuA at 853.726 kb on + strand, within dcuA at 853.726 kb on + strand, within dcuA at 853.726 kb on + strand, within dcuA at 853.727 kb on - strand, within dcuA
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 850,297 + yjeH NOLOHH_04685 0.87 +1.3 850,297 + yjeH NOLOHH_04685 0.87 -0.2 850,347 + +0.6 850,348 - +0.1 850,348 - -0.8 850,348 - -0.1 850,359 + +1.1 850,455 + +0.2 850,463 + +1.4 850,463 + +0.3 850,464 - +0.5 850,464 - -0.4 850,701 - fxsA NOLOHH_04690 0.46 -0.1 850,847 + fxsA NOLOHH_04690 0.77 -0.6 850,848 - fxsA NOLOHH_04690 0.77 +1.3 850,848 - fxsA NOLOHH_04690 0.77 +0.3 850,848 - fxsA NOLOHH_04690 0.77 -2.3 850,849 + fxsA NOLOHH_04690 0.77 +0.5 850,850 - fxsA NOLOHH_04690 0.77 +1.3 850,880 + fxsA NOLOHH_04690 0.84 -2.2 850,881 - fxsA NOLOHH_04690 0.84 +0.8 850,881 - fxsA NOLOHH_04690 0.84 +0.1 850,881 - fxsA NOLOHH_04690 0.84 +0.3 850,915 + -2.1 850,917 + +0.7 850,917 + -1.0 850,924 - -0.3 850,924 - -1.9 850,924 - -0.5 850,924 - -1.3 850,971 - -0.1 850,973 + -0.3 850,973 + +0.5 850,973 + +1.3 851,025 + -0.2 851,026 - +0.1 851,026 - +0.4 851,026 - +0.2 851,026 - +0.4 851,026 - -0.3 851,027 + -1.1 851,067 + -1.1 851,110 + -3.1 851,117 + +0.4 851,118 - -0.9 851,138 + -0.5 851,139 - -0.3 851,153 + -0.9 851,154 - -0.8 851,178 - -2.2 851,241 + -0.3 851,241 + -0.2 851,241 + -0.2 851,242 - +0.3 851,242 - -0.7 851,242 - -0.4 851,242 - -1.9 851,243 + +0.3 851,243 + +0.1 851,243 + -0.2 851,243 + -0.8 851,244 - -2.7 851,244 - -1.5 851,244 - -1.2 851,244 - -4.3 851,357 + -1.9 851,357 + -3.9 851,358 - -3.0 851,358 - -3.9 851,358 - -1.1 851,360 + -2.7 851,396 + -2.1 851,396 + -3.0 851,397 - -4.1 851,397 - -1.5 851,398 + -1.8 851,423 - -1.4 851,500 + aspA NOLOHH_04695 0.14 -1.2 851,500 + aspA NOLOHH_04695 0.14 -2.5 851,585 + aspA NOLOHH_04695 0.20 -4.3 851,586 - aspA NOLOHH_04695 0.20 -2.4 851,602 + aspA NOLOHH_04695 0.21 -1.2 851,602 + aspA NOLOHH_04695 0.21 -0.8 851,603 - aspA NOLOHH_04695 0.22 -2.6 851,610 + aspA NOLOHH_04695 0.22 -3.3 851,641 + aspA NOLOHH_04695 0.24 -1.2 851,678 + aspA NOLOHH_04695 0.27 -1.3 851,679 - aspA NOLOHH_04695 0.27 -2.2 851,684 + aspA NOLOHH_04695 0.27 -0.3 851,762 + aspA NOLOHH_04695 0.33 -2.3 851,762 + aspA NOLOHH_04695 0.33 -1.3 851,762 + aspA NOLOHH_04695 0.33 -0.5 851,776 + aspA NOLOHH_04695 0.34 -2.6 851,776 + aspA NOLOHH_04695 0.34 -4.5 851,784 + aspA NOLOHH_04695 0.34 -2.3 851,822 - aspA NOLOHH_04695 0.37 -2.0 851,953 + aspA NOLOHH_04695 0.46 -3.3 851,954 - aspA NOLOHH_04695 0.46 -4.5 851,978 - aspA NOLOHH_04695 0.48 -3.1 852,026 + aspA NOLOHH_04695 0.51 -2.1 852,078 + aspA NOLOHH_04695 0.55 -2.2 852,122 + aspA NOLOHH_04695 0.58 -5.3 852,122 + aspA NOLOHH_04695 0.58 -2.0 852,123 - aspA NOLOHH_04695 0.58 -3.7 852,123 - aspA NOLOHH_04695 0.58 -3.1 852,123 - aspA NOLOHH_04695 0.58 -2.1 852,123 - aspA NOLOHH_04695 0.58 -1.7 852,123 - aspA NOLOHH_04695 0.58 -2.0 852,123 - aspA NOLOHH_04695 0.58 -1.8 852,127 + aspA NOLOHH_04695 0.58 -1.1 852,128 - aspA NOLOHH_04695 0.58 -0.8 852,128 - aspA NOLOHH_04695 0.58 -2.4 852,272 - aspA NOLOHH_04695 0.68 -1.8 852,343 + aspA NOLOHH_04695 0.73 -4.6 852,382 + aspA NOLOHH_04695 0.76 -0.9 852,444 - aspA NOLOHH_04695 0.80 -1.7 852,482 - aspA NOLOHH_04695 0.83 -1.7 852,509 + aspA NOLOHH_04695 0.85 -2.5 852,509 + aspA NOLOHH_04695 0.85 -5.9 852,510 - aspA NOLOHH_04695 0.85 -2.5 852,530 - aspA NOLOHH_04695 0.86 -2.5 852,533 + aspA NOLOHH_04695 0.86 -2.1 852,533 + aspA NOLOHH_04695 0.86 -0.9 852,533 + aspA NOLOHH_04695 0.86 -1.3 852,607 - -0.7 852,693 - -1.1 852,707 + +0.6 852,707 + -2.1 852,709 + -0.8 852,710 - -1.4 852,729 - +0.5 852,742 - -0.2 852,744 + +0.2 852,744 + +0.7 852,744 + -0.4 852,750 + +0.0 852,751 - +0.4 852,795 - -1.8 852,848 - +0.7 852,848 - -0.8 852,852 + -0.3 852,853 - +0.7 852,853 - +0.8 852,853 - +0.9 852,853 - +0.2 852,853 - -2.4 852,858 + +0.1 852,858 + -0.7 852,859 - -0.5 852,870 + +0.5 852,871 - +0.8 852,871 - +1.2 852,912 + -0.3 852,912 + -0.6 852,912 + -0.3 852,912 + +0.5 852,912 + +1.1 852,913 - +1.1 852,913 - -0.7 852,913 - +0.3 852,913 - +1.6 852,913 - +0.1 852,913 - +2.1 852,916 + -1.4 852,917 - +0.0 852,967 + -0.3 853,003 + dcuA NOLOHH_04705 0.12 +1.0 853,024 + dcuA NOLOHH_04705 0.14 +0.4 853,058 + dcuA NOLOHH_04705 0.16 -0.1 853,058 + dcuA NOLOHH_04705 0.16 +1.7 853,103 + dcuA NOLOHH_04705 0.20 -0.4 853,104 - dcuA NOLOHH_04705 0.20 -0.2 853,104 - dcuA NOLOHH_04705 0.20 -1.6 853,133 + dcuA NOLOHH_04705 0.22 +0.8 853,134 - dcuA NOLOHH_04705 0.22 +0.3 853,144 + dcuA NOLOHH_04705 0.23 +0.1 853,145 - dcuA NOLOHH_04705 0.23 +0.3 853,167 + dcuA NOLOHH_04705 0.25 +0.6 853,167 + dcuA NOLOHH_04705 0.25 +0.6 853,167 + dcuA NOLOHH_04705 0.25 -0.3 853,167 + dcuA NOLOHH_04705 0.25 +0.8 853,167 + dcuA NOLOHH_04705 0.25 -0.2 853,167 + dcuA NOLOHH_04705 0.25 +1.8 853,168 - dcuA NOLOHH_04705 0.25 -0.8 853,168 - dcuA NOLOHH_04705 0.25 +0.7 853,168 - dcuA NOLOHH_04705 0.25 -0.6 853,168 - dcuA NOLOHH_04705 0.25 -0.5 853,240 + dcuA NOLOHH_04705 0.30 +0.7 853,301 + dcuA NOLOHH_04705 0.35 +0.1 853,301 + dcuA NOLOHH_04705 0.35 -0.3 853,301 + dcuA NOLOHH_04705 0.35 +0.6 853,301 + dcuA NOLOHH_04705 0.35 -1.3 853,302 - dcuA NOLOHH_04705 0.35 +0.4 853,302 - dcuA NOLOHH_04705 0.35 +1.1 853,337 + dcuA NOLOHH_04705 0.38 +0.2 853,338 - dcuA NOLOHH_04705 0.38 -0.1 853,408 + dcuA NOLOHH_04705 0.43 +0.0 853,409 - dcuA NOLOHH_04705 0.43 +0.3 853,445 + dcuA NOLOHH_04705 0.46 +1.1 853,549 - dcuA NOLOHH_04705 0.54 -0.0 853,562 - dcuA NOLOHH_04705 0.55 -1.5 853,565 + dcuA NOLOHH_04705 0.55 -0.1 853,565 + dcuA NOLOHH_04705 0.55 -2.3 853,566 - dcuA NOLOHH_04705 0.55 -0.5 853,679 - dcuA NOLOHH_04705 0.64 +0.4 853,726 + dcuA NOLOHH_04705 0.67 -0.2 853,726 + dcuA NOLOHH_04705 0.67 +0.6 853,726 + dcuA NOLOHH_04705 0.67 -0.8 853,727 - dcuA NOLOHH_04705 0.68 -0.4
Or see this region's nucleotide sequence