Strain Fitness in Escherichia coli ECOR27 around NOLOHH_04580

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGly_trna and Gly_trna are separated by 36 nucleotidesGly_trna and orn are separated by 210 nucleotidesorn and rsgA are separated by 94 nucleotidesrsgA and asd are separated by 97 nucleotides NOLOHH_04565: Gly_trna - tRNA-Gly(gcc), at 826,348 to 826,423 _trna NOLOHH_04570: Gly_trna - tRNA-Gly(gcc), at 826,460 to 826,535 _trna NOLOHH_04575: orn - oligoribonuclease, at 826,746 to 827,291 orn NOLOHH_04580: rsgA - small ribosomal subunit biogenesis GTPase RsgA, at 827,386 to 828,438 rsgA NOLOHH_04585: asd - archaetidylserine decarboxylase, at 828,536 to 829,504 asd Position (kb) 827 828 829Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 826.538 kb on - strandat 826.541 kb on - strandat 826.541 kb on - strandat 826.541 kb on - strandat 826.687 kb on + strandat 826.727 kb on + strandat 826.727 kb on + strandat 826.727 kb on + strandat 826.758 kb on - strandat 827.319 kb on - strandat 827.319 kb on - strandat 827.319 kb on - strandat 827.321 kb on - strandat 827.321 kb on - strandat 827.341 kb on - strandat 827.341 kb on - strandat 827.345 kb on + strandat 827.345 kb on + strandat 827.345 kb on + strandat 827.345 kb on + strandat 827.345 kb on + strandat 827.345 kb on + strandat 827.345 kb on + strandat 828.402 kb on - strandat 828.443 kb on + strandat 828.443 kb on + strandat 828.443 kb on + strandat 828.443 kb on + strandat 828.443 kb on + strandat 828.448 kb on + strandat 828.493 kb on + strandat 828.493 kb on + strandat 828.493 kb on + strandat 829.389 kb on + strand, within asd

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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826,538 - +0.2
826,541 - -0.8
826,541 - +0.5
826,541 - +0.7
826,687 + -0.3
826,727 + +0.5
826,727 + -0.5
826,727 + +0.7
826,758 - +0.2
827,319 - -0.4
827,319 - -0.5
827,319 - -0.0
827,321 - +0.7
827,321 - -0.5
827,341 - +0.4
827,341 - -0.8
827,345 + -2.5
827,345 + +1.2
827,345 + -0.1
827,345 + +0.0
827,345 + -0.3
827,345 + -4.0
827,345 + +0.1
828,402 - -2.6
828,443 + +0.2
828,443 + +0.7
828,443 + +0.3
828,443 + -0.3
828,443 + -0.2
828,448 + +0.2
828,493 + +0.6
828,493 + -0.3
828,493 + +1.1
829,389 + asd NOLOHH_04585 0.88 -0.6

Or see this region's nucleotide sequence