Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Gly_trna and Gly_trna are separated by 36 nucleotides Gly_trna and orn are separated by 210 nucleotides orn and rsgA are separated by 94 nucleotides rsgA and asd are separated by 97 nucleotides
NOLOHH_04565: Gly_trna - tRNA-Gly(gcc), at 826,348 to 826,423
_trna
NOLOHH_04570: Gly_trna - tRNA-Gly(gcc), at 826,460 to 826,535
_trna
NOLOHH_04575: orn - oligoribonuclease, at 826,746 to 827,291
orn
NOLOHH_04580: rsgA - small ribosomal subunit biogenesis GTPase RsgA, at 827,386 to 828,438
rsgA
NOLOHH_04585: asd - archaetidylserine decarboxylase, at 828,536 to 829,504
asd
Position (kb)
827
828
829 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 826.538 kb on - strand at 826.541 kb on - strand at 826.541 kb on - strand at 826.541 kb on - strand at 826.687 kb on + strand at 826.727 kb on + strand at 826.727 kb on + strand at 826.727 kb on + strand at 826.758 kb on - strand at 827.319 kb on - strand at 827.319 kb on - strand at 827.319 kb on - strand at 827.321 kb on - strand at 827.321 kb on - strand at 827.341 kb on - strand at 827.341 kb on - strand at 827.345 kb on + strand at 827.345 kb on + strand at 827.345 kb on + strand at 827.345 kb on + strand at 827.345 kb on + strand at 827.345 kb on + strand at 827.345 kb on + strand at 828.402 kb on - strand at 828.443 kb on + strand at 828.443 kb on + strand at 828.443 kb on + strand at 828.443 kb on + strand at 828.443 kb on + strand at 828.448 kb on + strand at 828.493 kb on + strand at 828.493 kb on + strand at 828.493 kb on + strand at 829.389 kb on + strand, within asd
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 826,538 - +0.2 826,541 - -0.8 826,541 - +0.5 826,541 - +0.7 826,687 + -0.3 826,727 + +0.5 826,727 + -0.5 826,727 + +0.7 826,758 - +0.2 827,319 - -0.4 827,319 - -0.5 827,319 - -0.0 827,321 - +0.7 827,321 - -0.5 827,341 - +0.4 827,341 - -0.8 827,345 + -2.5 827,345 + +1.2 827,345 + -0.1 827,345 + +0.0 827,345 + -0.3 827,345 + -4.0 827,345 + +0.1 828,402 - -2.6 828,443 + +0.2 828,443 + +0.7 828,443 + +0.3 828,443 + -0.3 828,443 + -0.2 828,448 + +0.2 828,493 + +0.6 828,493 + -0.3 828,493 + +1.1 829,389 + asd NOLOHH_04585 0.88 -0.6
Or see this region's nucleotide sequence