Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lplA and NOLOHH_03540 are separated by 31 nucleotides NOLOHH_03540 and deoD are separated by 274 nucleotides deoD and deoB are separated by 79 nucleotides
NOLOHH_03535: lplA - lipoate--protein ligase LplA, at 627,064 to 628,080
lplA
NOLOHH_03540: NOLOHH_03540 - Lipoate-protein ligase A, at 628,112 to 628,261
_03540
NOLOHH_03545: deoD - purine-nucleoside phosphorylase, at 628,536 to 629,255
deoD
NOLOHH_03550: deoB - phosphopentomutase, at 629,335 to 630,558
deoB
Position (kb) 628
629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 627.556 kb on + strand, within lplA at 627.556 kb on + strand, within lplA at 627.557 kb on - strand, within lplA at 627.597 kb on + strand, within lplA at 627.597 kb on + strand, within lplA at 627.597 kb on + strand, within lplA at 627.597 kb on + strand, within lplA at 627.598 kb on - strand, within lplA at 627.598 kb on - strand, within lplA at 627.598 kb on - strand, within lplA at 627.598 kb on - strand, within lplA at 627.711 kb on - strand, within lplA at 627.784 kb on - strand, within lplA at 627.843 kb on + strand, within lplA at 627.844 kb on - strand, within lplA at 628.144 kb on + strand, within NOLOHH_03540 at 628.150 kb on + strand, within NOLOHH_03540 at 628.150 kb on + strand, within NOLOHH_03540 at 628.150 kb on + strand, within NOLOHH_03540 at 628.150 kb on + strand, within NOLOHH_03540 at 628.150 kb on + strand, within NOLOHH_03540 at 628.151 kb on - strand, within NOLOHH_03540 at 628.151 kb on - strand, within NOLOHH_03540 at 628.151 kb on - strand, within NOLOHH_03540 at 628.152 kb on + strand, within NOLOHH_03540 at 628.152 kb on + strand, within NOLOHH_03540 at 628.152 kb on + strand, within NOLOHH_03540 at 628.153 kb on - strand, within NOLOHH_03540 at 628.158 kb on + strand, within NOLOHH_03540 at 628.201 kb on + strand, within NOLOHH_03540 at 628.206 kb on + strand, within NOLOHH_03540 at 628.207 kb on - strand, within NOLOHH_03540 at 628.221 kb on + strand, within NOLOHH_03540 at 628.225 kb on + strand, within NOLOHH_03540 at 628.260 kb on - strand at 628.369 kb on + strand at 628.369 kb on + strand at 628.369 kb on + strand at 628.370 kb on - strand at 628.389 kb on + strand at 628.390 kb on - strand at 628.471 kb on - strand at 628.538 kb on - strand at 628.696 kb on + strand, within deoD at 628.696 kb on + strand, within deoD at 628.697 kb on - strand, within deoD at 628.700 kb on + strand, within deoD at 628.701 kb on - strand, within deoD at 628.892 kb on + strand, within deoD at 628.959 kb on + strand, within deoD at 629.038 kb on + strand, within deoD at 629.038 kb on + strand, within deoD at 629.039 kb on - strand, within deoD at 629.039 kb on - strand, within deoD at 629.099 kb on - strand, within deoD at 629.099 kb on - strand, within deoD at 629.171 kb on + strand, within deoD at 629.172 kb on - strand, within deoD at 629.172 kb on - strand, within deoD at 629.172 kb on - strand, within deoD at 629.173 kb on + strand, within deoD at 629.173 kb on + strand, within deoD at 629.173 kb on + strand, within deoD at 629.173 kb on + strand, within deoD at 629.173 kb on + strand, within deoD at 629.174 kb on - strand, within deoD at 629.174 kb on - strand, within deoD at 629.174 kb on - strand, within deoD at 629.208 kb on + strand at 629.208 kb on + strand at 629.209 kb on - strand at 629.209 kb on - strand at 629.209 kb on - strand at 629.209 kb on - strand at 629.237 kb on + strand at 629.237 kb on + strand at 629.261 kb on + strand at 629.267 kb on + strand at 629.355 kb on - strand at 629.355 kb on - strand at 629.441 kb on - strand at 629.768 kb on + strand, within deoB at 629.769 kb on - strand, within deoB at 629.937 kb on + strand, within deoB at 630.052 kb on - strand, within deoB at 630.054 kb on - strand, within deoB at 630.138 kb on - strand, within deoB at 630.168 kb on + strand, within deoB at 630.212 kb on + strand, within deoB at 630.212 kb on + strand, within deoB
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 627,556 + lplA NOLOHH_03535 0.48 -0.2 627,556 + lplA NOLOHH_03535 0.48 +0.3 627,557 - lplA NOLOHH_03535 0.48 +0.4 627,597 + lplA NOLOHH_03535 0.52 -0.0 627,597 + lplA NOLOHH_03535 0.52 -0.1 627,597 + lplA NOLOHH_03535 0.52 -0.0 627,597 + lplA NOLOHH_03535 0.52 -1.0 627,598 - lplA NOLOHH_03535 0.53 -0.0 627,598 - lplA NOLOHH_03535 0.53 +0.7 627,598 - lplA NOLOHH_03535 0.53 -1.5 627,598 - lplA NOLOHH_03535 0.53 +0.4 627,711 - lplA NOLOHH_03535 0.64 +0.1 627,784 - lplA NOLOHH_03535 0.71 -0.2 627,843 + lplA NOLOHH_03535 0.77 +0.3 627,844 - lplA NOLOHH_03535 0.77 +0.1 628,144 + NOLOHH_03540 0.21 -1.5 628,150 + NOLOHH_03540 0.25 +0.3 628,150 + NOLOHH_03540 0.25 -1.7 628,150 + NOLOHH_03540 0.25 -0.9 628,150 + NOLOHH_03540 0.25 +0.9 628,150 + NOLOHH_03540 0.25 +0.0 628,151 - NOLOHH_03540 0.26 +0.4 628,151 - NOLOHH_03540 0.26 +1.2 628,151 - NOLOHH_03540 0.26 -0.8 628,152 + NOLOHH_03540 0.27 -1.6 628,152 + NOLOHH_03540 0.27 +0.6 628,152 + NOLOHH_03540 0.27 +0.6 628,153 - NOLOHH_03540 0.27 -1.5 628,158 + NOLOHH_03540 0.31 -2.8 628,201 + NOLOHH_03540 0.59 -2.7 628,206 + NOLOHH_03540 0.63 -0.4 628,207 - NOLOHH_03540 0.63 +0.2 628,221 + NOLOHH_03540 0.73 -0.0 628,225 + NOLOHH_03540 0.75 +0.7 628,260 - -1.9 628,369 + +0.7 628,369 + +0.2 628,369 + -0.1 628,370 - -1.2 628,389 + +0.5 628,390 - -0.5 628,471 - -0.2 628,538 - +0.3 628,696 + deoD NOLOHH_03545 0.22 -0.7 628,696 + deoD NOLOHH_03545 0.22 +0.6 628,697 - deoD NOLOHH_03545 0.22 -1.7 628,700 + deoD NOLOHH_03545 0.23 +0.2 628,701 - deoD NOLOHH_03545 0.23 +1.7 628,892 + deoD NOLOHH_03545 0.49 +0.4 628,959 + deoD NOLOHH_03545 0.59 -2.4 629,038 + deoD NOLOHH_03545 0.70 +0.0 629,038 + deoD NOLOHH_03545 0.70 -0.3 629,039 - deoD NOLOHH_03545 0.70 +0.0 629,039 - deoD NOLOHH_03545 0.70 +0.9 629,099 - deoD NOLOHH_03545 0.78 -1.2 629,099 - deoD NOLOHH_03545 0.78 +0.6 629,171 + deoD NOLOHH_03545 0.88 +0.4 629,172 - deoD NOLOHH_03545 0.88 +0.5 629,172 - deoD NOLOHH_03545 0.88 +1.5 629,172 - deoD NOLOHH_03545 0.88 +0.1 629,173 + deoD NOLOHH_03545 0.88 -0.6 629,173 + deoD NOLOHH_03545 0.88 +0.6 629,173 + deoD NOLOHH_03545 0.88 +0.7 629,173 + deoD NOLOHH_03545 0.88 -0.3 629,173 + deoD NOLOHH_03545 0.88 +0.7 629,174 - deoD NOLOHH_03545 0.89 +0.2 629,174 - deoD NOLOHH_03545 0.89 +0.6 629,174 - deoD NOLOHH_03545 0.89 -1.4 629,208 + +0.0 629,208 + -0.8 629,209 - +0.4 629,209 - -0.0 629,209 - +0.7 629,209 - +0.5 629,237 + -0.8 629,237 + +0.5 629,261 + -0.6 629,267 + -0.8 629,355 - -0.0 629,355 - +0.5 629,441 - +0.3 629,768 + deoB NOLOHH_03550 0.35 -0.3 629,769 - deoB NOLOHH_03550 0.35 -0.3 629,937 + deoB NOLOHH_03550 0.49 -1.2 630,052 - deoB NOLOHH_03550 0.59 -0.6 630,054 - deoB NOLOHH_03550 0.59 +0.2 630,138 - deoB NOLOHH_03550 0.66 -1.5 630,168 + deoB NOLOHH_03550 0.68 +0.7 630,212 + deoB NOLOHH_03550 0.72 -0.1 630,212 + deoB NOLOHH_03550 0.72 +0.5
Or see this region's nucleotide sequence