Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt caiE and caiF are separated by 85 nucleotides caiF and carB are separated by 259 nucleotides carB and carA are separated by 17 nucleotides
NOLOHH_03260: caiE - carnitine operon protein CaiE, at 572,356 to 572,946
caiE
NOLOHH_03265: caiF - carnitine metabolism transcriptional regulator CaiF, at 573,032 to 573,427
caiF
NOLOHH_03270: carB - carbamoyl-phosphate synthase large subunit, at 573,687 to 576,908
carB
NOLOHH_03275: carA - carbamoyl phosphate synthase small subunit, at 576,926 to 578,074
carA
Position (kb) 573
574
575
576
577 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 572.802 kb on - strand, within caiE at 572.975 kb on + strand at 572.976 kb on - strand at 572.976 kb on - strand at 572.983 kb on + strand at 572.984 kb on - strand at 572.984 kb on - strand at 573.028 kb on - strand at 573.043 kb on + strand at 573.044 kb on - strand at 573.044 kb on - strand at 573.110 kb on - strand, within caiF at 573.151 kb on + strand, within caiF at 573.198 kb on - strand, within caiF at 573.235 kb on + strand, within caiF at 573.236 kb on - strand, within caiF at 573.236 kb on - strand, within caiF at 573.236 kb on - strand, within caiF at 573.236 kb on - strand, within caiF at 573.264 kb on - strand, within caiF at 573.286 kb on + strand, within caiF at 573.286 kb on + strand, within caiF at 573.287 kb on - strand, within caiF at 573.287 kb on - strand, within caiF at 573.287 kb on - strand, within caiF at 573.288 kb on + strand, within caiF at 573.288 kb on + strand, within caiF at 573.288 kb on + strand, within caiF at 573.289 kb on - strand, within caiF at 573.289 kb on - strand, within caiF at 573.289 kb on - strand, within caiF at 573.289 kb on - strand, within caiF at 573.335 kb on - strand, within caiF at 573.397 kb on - strand at 573.397 kb on - strand at 573.397 kb on - strand at 573.427 kb on + strand at 573.449 kb on + strand at 573.482 kb on + strand at 573.520 kb on + strand at 573.521 kb on - strand at 573.521 kb on - strand at 573.521 kb on - strand at 573.539 kb on + strand at 573.540 kb on - strand at 573.540 kb on - strand at 573.540 kb on - strand at 573.551 kb on - strand at 573.561 kb on + strand at 573.561 kb on + strand at 573.561 kb on + strand at 573.561 kb on + strand at 573.561 kb on + strand at 573.561 kb on + strand at 573.562 kb on - strand at 573.562 kb on - strand at 573.562 kb on - strand at 573.595 kb on + strand at 573.600 kb on - strand at 573.600 kb on - strand at 573.634 kb on + strand at 573.635 kb on - strand at 573.635 kb on - strand at 573.635 kb on - strand at 573.638 kb on - strand at 573.638 kb on - strand at 573.641 kb on + strand at 573.686 kb on - strand at 573.686 kb on - strand at 573.686 kb on - strand at 573.688 kb on + strand at 573.689 kb on - strand at 573.689 kb on - strand at 573.689 kb on - strand at 573.790 kb on + strand at 573.791 kb on - strand at 573.791 kb on - strand at 573.800 kb on + strand at 573.800 kb on + strand at 573.800 kb on + strand at 573.801 kb on - strand at 573.802 kb on + strand at 573.802 kb on + strand at 573.803 kb on - strand at 573.874 kb on + strand at 573.874 kb on + strand at 573.874 kb on + strand at 573.874 kb on + strand at 573.874 kb on + strand at 573.874 kb on + strand at 573.875 kb on - strand at 573.875 kb on - strand at 573.875 kb on - strand at 573.878 kb on + strand at 573.878 kb on + strand at 573.878 kb on + strand at 573.878 kb on + strand at 573.878 kb on + strand at 573.878 kb on + strand at 573.879 kb on - strand at 573.879 kb on - strand at 573.880 kb on + strand at 573.881 kb on - strand at 573.881 kb on - strand at 573.894 kb on - strand at 574.246 kb on + strand, within carB at 574.246 kb on + strand, within carB at 574.249 kb on + strand, within carB at 574.250 kb on - strand, within carB at 574.250 kb on - strand, within carB at 574.506 kb on + strand, within carB at 574.506 kb on + strand, within carB at 574.507 kb on - strand, within carB at 574.507 kb on - strand, within carB at 574.507 kb on - strand, within carB at 574.507 kb on - strand, within carB at 574.507 kb on - strand, within carB at 574.513 kb on + strand, within carB at 574.514 kb on - strand, within carB at 574.724 kb on - strand, within carB at 574.757 kb on - strand, within carB at 574.767 kb on + strand, within carB at 574.768 kb on - strand, within carB at 574.768 kb on - strand, within carB at 574.768 kb on - strand, within carB at 574.803 kb on + strand, within carB at 575.028 kb on + strand, within carB at 575.060 kb on - strand, within carB at 575.081 kb on - strand, within carB at 575.105 kb on + strand, within carB at 575.106 kb on - strand, within carB at 575.112 kb on - strand, within carB at 575.170 kb on + strand, within carB at 575.171 kb on - strand, within carB at 575.269 kb on + strand, within carB at 575.270 kb on - strand, within carB at 575.270 kb on - strand, within carB at 575.278 kb on + strand, within carB at 575.278 kb on + strand, within carB at 575.278 kb on + strand, within carB at 575.278 kb on + strand, within carB at 575.278 kb on + strand, within carB at 575.278 kb on + strand, within carB at 575.278 kb on + strand, within carB at 575.279 kb on - strand, within carB at 575.279 kb on - strand, within carB at 575.279 kb on - strand, within carB at 575.284 kb on + strand, within carB at 575.284 kb on + strand, within carB at 575.284 kb on + strand, within carB at 575.285 kb on - strand, within carB at 575.285 kb on - strand, within carB at 575.285 kb on - strand, within carB at 575.285 kb on - strand, within carB at 575.285 kb on - strand, within carB at 575.330 kb on + strand, within carB at 575.351 kb on - strand, within carB at 575.597 kb on - strand, within carB at 575.603 kb on + strand, within carB at 575.798 kb on + strand, within carB at 575.838 kb on - strand, within carB at 575.849 kb on - strand, within carB at 575.879 kb on + strand, within carB at 575.879 kb on + strand, within carB at 575.948 kb on + strand, within carB at 576.262 kb on + strand, within carB at 576.361 kb on + strand, within carB at 576.362 kb on - strand, within carB at 576.362 kb on - strand, within carB at 576.507 kb on + strand, within carB at 576.508 kb on - strand, within carB at 576.536 kb on + strand, within carB at 576.566 kb on + strand, within carB at 576.566 kb on + strand, within carB at 576.715 kb on + strand at 576.716 kb on - strand at 576.806 kb on + strand at 576.806 kb on + strand at 576.806 kb on + strand at 576.806 kb on + strand at 576.806 kb on + strand at 576.807 kb on - strand at 576.807 kb on - strand at 576.807 kb on - strand at 576.807 kb on - strand at 576.807 kb on - strand at 576.807 kb on - strand at 576.826 kb on + strand at 576.826 kb on + strand at 576.881 kb on + strand at 576.888 kb on + strand at 576.888 kb on + strand at 576.889 kb on - strand at 576.890 kb on + strand at 576.891 kb on - strand at 576.891 kb on - strand at 576.896 kb on + strand at 576.897 kb on - strand at 576.918 kb on - strand at 576.928 kb on - strand at 576.940 kb on + strand at 576.945 kb on + strand at 576.956 kb on + strand at 576.957 kb on - strand at 577.064 kb on + strand, within carA at 577.087 kb on + strand, within carA at 577.087 kb on + strand, within carA at 577.088 kb on - strand, within carA at 577.088 kb on - strand, within carA at 577.088 kb on - strand, within carA at 577.088 kb on - strand, within carA at 577.088 kb on - strand, within carA at 577.326 kb on + strand, within carA at 577.486 kb on - strand, within carA at 577.571 kb on - strand, within carA at 577.572 kb on + strand, within carA at 577.572 kb on + strand, within carA at 577.573 kb on - strand, within carA at 577.573 kb on - strand, within carA at 577.713 kb on - strand, within carA at 577.759 kb on + strand, within carA at 577.760 kb on - strand, within carA at 577.792 kb on + strand, within carA at 577.796 kb on - strand, within carA at 577.850 kb on + strand, within carA at 577.851 kb on - strand, within carA at 577.851 kb on - strand, within carA at 577.898 kb on - strand, within carA at 577.905 kb on + strand, within carA
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 572,802 - caiE NOLOHH_03260 0.75 +0.4 572,975 + -0.3 572,976 - -0.9 572,976 - +0.6 572,983 + +0.6 572,984 - +1.5 572,984 - -0.7 573,028 - -0.4 573,043 + +0.5 573,044 - +0.6 573,044 - -0.4 573,110 - caiF NOLOHH_03265 0.20 -0.6 573,151 + caiF NOLOHH_03265 0.30 -0.5 573,198 - caiF NOLOHH_03265 0.42 -0.0 573,235 + caiF NOLOHH_03265 0.51 +1.1 573,236 - caiF NOLOHH_03265 0.52 -0.1 573,236 - caiF NOLOHH_03265 0.52 -1.5 573,236 - caiF NOLOHH_03265 0.52 +0.7 573,236 - caiF NOLOHH_03265 0.52 +0.4 573,264 - caiF NOLOHH_03265 0.59 +0.3 573,286 + caiF NOLOHH_03265 0.64 -0.3 573,286 + caiF NOLOHH_03265 0.64 +0.7 573,287 - caiF NOLOHH_03265 0.64 +0.1 573,287 - caiF NOLOHH_03265 0.64 +0.8 573,287 - caiF NOLOHH_03265 0.64 -0.0 573,288 + caiF NOLOHH_03265 0.65 +0.2 573,288 + caiF NOLOHH_03265 0.65 -0.3 573,288 + caiF NOLOHH_03265 0.65 -0.1 573,289 - caiF NOLOHH_03265 0.65 -0.5 573,289 - caiF NOLOHH_03265 0.65 -0.3 573,289 - caiF NOLOHH_03265 0.65 +0.5 573,289 - caiF NOLOHH_03265 0.65 -0.1 573,335 - caiF NOLOHH_03265 0.77 +0.1 573,397 - -1.4 573,397 - -0.3 573,397 - -0.6 573,427 + -0.3 573,449 + -0.0 573,482 + +1.8 573,520 + -1.2 573,521 - -0.8 573,521 - -2.0 573,521 - -0.6 573,539 + +0.8 573,540 - +0.7 573,540 - +0.5 573,540 - +0.9 573,551 - -0.4 573,561 + +0.7 573,561 + +0.0 573,561 + +0.1 573,561 + +0.3 573,561 + +0.1 573,561 + -0.3 573,562 - -0.2 573,562 - +0.4 573,562 - -1.4 573,595 + -1.4 573,600 - -2.8 573,600 - -0.2 573,634 + -0.6 573,635 - -0.6 573,635 - +0.2 573,635 - -0.4 573,638 - -1.6 573,638 - -0.3 573,641 + -1.2 573,686 - -0.9 573,686 - +0.4 573,686 - -0.0 573,688 + -0.8 573,689 - +0.2 573,689 - -2.7 573,689 - +0.6 573,790 + -1.5 573,791 - -0.9 573,791 - -0.2 573,800 + -5.5 573,800 + -0.8 573,800 + -2.7 573,801 - -1.5 573,802 + -2.7 573,802 + -0.8 573,803 - -3.7 573,874 + +2.1 573,874 + -1.8 573,874 + -0.6 573,874 + +0.2 573,874 + +0.1 573,874 + +0.2 573,875 - -3.0 573,875 - +1.1 573,875 - -1.9 573,878 + -4.2 573,878 + -3.3 573,878 + -1.8 573,878 + -3.2 573,878 + -3.1 573,878 + -1.0 573,879 - -0.3 573,879 - -0.4 573,880 + -3.3 573,881 - -0.0 573,881 - +0.2 573,894 - +0.2 574,246 + carB NOLOHH_03270 0.17 -3.4 574,246 + carB NOLOHH_03270 0.17 -2.0 574,249 + carB NOLOHH_03270 0.17 -3.6 574,250 - carB NOLOHH_03270 0.17 -3.7 574,250 - carB NOLOHH_03270 0.17 -1.4 574,506 + carB NOLOHH_03270 0.25 -3.4 574,506 + carB NOLOHH_03270 0.25 -5.5 574,507 - carB NOLOHH_03270 0.25 -6.2 574,507 - carB NOLOHH_03270 0.25 -5.7 574,507 - carB NOLOHH_03270 0.25 -4.1 574,507 - carB NOLOHH_03270 0.25 -3.1 574,507 - carB NOLOHH_03270 0.25 -5.4 574,513 + carB NOLOHH_03270 0.26 -2.3 574,514 - carB NOLOHH_03270 0.26 -4.1 574,724 - carB NOLOHH_03270 0.32 -0.9 574,757 - carB NOLOHH_03270 0.33 -4.9 574,767 + carB NOLOHH_03270 0.34 -3.9 574,768 - carB NOLOHH_03270 0.34 -4.4 574,768 - carB NOLOHH_03270 0.34 -3.1 574,768 - carB NOLOHH_03270 0.34 -3.6 574,803 + carB NOLOHH_03270 0.35 -3.7 575,028 + carB NOLOHH_03270 0.42 -3.0 575,060 - carB NOLOHH_03270 0.43 -5.8 575,081 - carB NOLOHH_03270 0.43 -3.8 575,105 + carB NOLOHH_03270 0.44 -2.2 575,106 - carB NOLOHH_03270 0.44 -3.2 575,112 - carB NOLOHH_03270 0.44 -5.6 575,170 + carB NOLOHH_03270 0.46 -2.9 575,171 - carB NOLOHH_03270 0.46 -3.0 575,269 + carB NOLOHH_03270 0.49 -3.0 575,270 - carB NOLOHH_03270 0.49 -5.4 575,270 - carB NOLOHH_03270 0.49 -5.2 575,278 + carB NOLOHH_03270 0.49 -3.7 575,278 + carB NOLOHH_03270 0.49 -2.3 575,278 + carB NOLOHH_03270 0.49 -4.6 575,278 + carB NOLOHH_03270 0.49 -3.7 575,278 + carB NOLOHH_03270 0.49 -1.3 575,278 + carB NOLOHH_03270 0.49 -3.0 575,278 + carB NOLOHH_03270 0.49 -4.2 575,279 - carB NOLOHH_03270 0.49 -3.6 575,279 - carB NOLOHH_03270 0.49 -4.8 575,279 - carB NOLOHH_03270 0.49 -5.1 575,284 + carB NOLOHH_03270 0.50 -3.4 575,284 + carB NOLOHH_03270 0.50 -3.9 575,284 + carB NOLOHH_03270 0.50 -4.3 575,285 - carB NOLOHH_03270 0.50 -3.7 575,285 - carB NOLOHH_03270 0.50 -4.9 575,285 - carB NOLOHH_03270 0.50 -3.7 575,285 - carB NOLOHH_03270 0.50 -1.5 575,285 - carB NOLOHH_03270 0.50 -4.2 575,330 + carB NOLOHH_03270 0.51 -5.2 575,351 - carB NOLOHH_03270 0.52 -4.8 575,597 - carB NOLOHH_03270 0.59 -2.8 575,603 + carB NOLOHH_03270 0.59 -5.2 575,798 + carB NOLOHH_03270 0.66 -0.8 575,838 - carB NOLOHH_03270 0.67 -4.3 575,849 - carB NOLOHH_03270 0.67 -3.5 575,879 + carB NOLOHH_03270 0.68 -5.5 575,879 + carB NOLOHH_03270 0.68 -1.7 575,948 + carB NOLOHH_03270 0.70 -2.3 576,262 + carB NOLOHH_03270 0.80 -4.3 576,361 + carB NOLOHH_03270 0.83 -4.7 576,362 - carB NOLOHH_03270 0.83 -4.7 576,362 - carB NOLOHH_03270 0.83 -1.6 576,507 + carB NOLOHH_03270 0.88 -3.9 576,508 - carB NOLOHH_03270 0.88 -3.9 576,536 + carB NOLOHH_03270 0.88 -4.5 576,566 + carB NOLOHH_03270 0.89 -4.2 576,566 + carB NOLOHH_03270 0.89 -5.4 576,715 + -2.7 576,716 - -4.5 576,806 + -4.6 576,806 + -1.8 576,806 + -3.8 576,806 + -4.0 576,806 + -4.3 576,807 - -1.8 576,807 - -3.3 576,807 - -2.3 576,807 - -4.8 576,807 - -3.1 576,807 - -4.0 576,826 + -2.6 576,826 + -5.2 576,881 + -3.8 576,888 + -1.5 576,888 + -0.8 576,889 - -4.3 576,890 + -3.5 576,891 - -4.3 576,891 - -4.5 576,896 + -5.3 576,897 - -1.1 576,918 - -0.8 576,928 - -0.3 576,940 + -4.1 576,945 + -4.6 576,956 + -4.2 576,957 - -1.5 577,064 + carA NOLOHH_03275 0.12 -3.8 577,087 + carA NOLOHH_03275 0.14 -4.4 577,087 + carA NOLOHH_03275 0.14 -3.5 577,088 - carA NOLOHH_03275 0.14 -3.7 577,088 - carA NOLOHH_03275 0.14 -3.2 577,088 - carA NOLOHH_03275 0.14 -2.8 577,088 - carA NOLOHH_03275 0.14 -1.0 577,088 - carA NOLOHH_03275 0.14 -3.8 577,326 + carA NOLOHH_03275 0.35 -3.1 577,486 - carA NOLOHH_03275 0.49 -4.8 577,571 - carA NOLOHH_03275 0.56 -0.4 577,572 + carA NOLOHH_03275 0.56 +0.8 577,572 + carA NOLOHH_03275 0.56 -2.1 577,573 - carA NOLOHH_03275 0.56 -4.9 577,573 - carA NOLOHH_03275 0.56 -2.2 577,713 - carA NOLOHH_03275 0.68 -2.8 577,759 + carA NOLOHH_03275 0.72 -4.1 577,760 - carA NOLOHH_03275 0.73 -3.2 577,792 + carA NOLOHH_03275 0.75 -3.5 577,796 - carA NOLOHH_03275 0.76 -3.6 577,850 + carA NOLOHH_03275 0.80 -3.8 577,851 - carA NOLOHH_03275 0.81 -4.6 577,851 - carA NOLOHH_03275 0.81 -2.4 577,898 - carA NOLOHH_03275 0.85 -5.6 577,905 + carA NOLOHH_03275 0.85 -4.3
Or see this region's nucleotide sequence