Strain Fitness in Escherichia coli ECOR27 around NOLOHH_02875

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntampE and ampD overlap by 4 nucleotidesampD and nadC are separated by 87 nucleotidesnadC and ppdD are separated by 202 nucleotidesppdD and gspE are separated by 9 nucleotides NOLOHH_02865: ampE - beta-lactamase regulator AmpE, at 489,211 to 490,065 ampE NOLOHH_02870: ampD - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD, at 490,062 to 490,613 ampD NOLOHH_02875: nadC - carboxylating nicotinate-nucleotide diphosphorylase, at 490,701 to 491,594 nadC NOLOHH_02880: ppdD - prepilin peptidase-dependent pilin, at 491,797 to 492,237 ppdD NOLOHH_02885: gspE - type II secretion system protein GspE, at 492,247 to 493,632 gspE Position (kb) 490 491 492Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 489.765 kb on + strand, within ampEat 489.766 kb on - strand, within ampEat 489.766 kb on - strand, within ampEat 489.766 kb on - strand, within ampEat 489.786 kb on - strand, within ampEat 489.786 kb on - strand, within ampEat 489.810 kb on + strand, within ampEat 489.811 kb on - strand, within ampEat 489.874 kb on + strand, within ampEat 489.874 kb on + strand, within ampEat 489.874 kb on + strand, within ampEat 489.875 kb on - strand, within ampEat 489.898 kb on + strand, within ampEat 489.922 kb on - strand, within ampEat 490.045 kb on + strandat 490.046 kb on - strandat 490.046 kb on - strandat 490.053 kb on + strandat 490.053 kb on + strandat 490.053 kb on + strandat 490.057 kb on + strandat 490.057 kb on + strandat 490.058 kb on - strandat 490.058 kb on - strandat 490.058 kb on - strandat 490.146 kb on - strand, within ampDat 490.183 kb on + strand, within ampDat 490.240 kb on + strand, within ampDat 490.240 kb on + strand, within ampDat 490.240 kb on + strand, within ampDat 490.354 kb on + strand, within ampDat 490.355 kb on - strand, within ampDat 490.355 kb on - strand, within ampDat 490.355 kb on - strand, within ampDat 490.355 kb on - strand, within ampDat 490.362 kb on + strand, within ampDat 490.363 kb on - strand, within ampDat 490.448 kb on + strand, within ampDat 490.448 kb on + strand, within ampDat 490.448 kb on + strand, within ampDat 490.448 kb on + strand, within ampDat 490.462 kb on - strand, within ampDat 490.505 kb on + strand, within ampDat 490.509 kb on - strand, within ampDat 490.558 kb on + strandat 490.606 kb on - strandat 490.606 kb on - strandat 490.626 kb on + strandat 490.626 kb on + strandat 490.626 kb on + strandat 490.626 kb on + strandat 490.626 kb on + strandat 490.627 kb on - strandat 490.627 kb on - strandat 490.627 kb on - strandat 490.627 kb on - strandat 490.627 kb on - strandat 490.627 kb on - strandat 490.628 kb on + strandat 490.628 kb on + strandat 490.628 kb on + strandat 490.628 kb on + strandat 490.628 kb on + strandat 490.628 kb on + strandat 490.629 kb on - strandat 490.629 kb on - strandat 490.629 kb on - strandat 490.629 kb on - strandat 490.629 kb on - strandat 490.629 kb on - strandat 490.629 kb on - strandat 490.629 kb on - strandat 490.629 kb on - strandat 490.629 kb on - strandat 490.629 kb on - strandat 490.638 kb on + strandat 490.666 kb on + strandat 490.666 kb on + strandat 490.671 kb on + strandat 490.685 kb on + strandat 490.685 kb on + strandat 490.686 kb on - strandat 490.686 kb on - strandat 490.686 kb on - strandat 490.698 kb on - strandat 490.758 kb on - strandat 490.804 kb on + strand, within nadCat 490.832 kb on + strand, within nadCat 490.832 kb on + strand, within nadCat 490.833 kb on - strand, within nadCat 490.833 kb on - strand, within nadCat 490.934 kb on + strand, within nadCat 491.066 kb on + strand, within nadCat 491.105 kb on - strand, within nadCat 491.112 kb on + strand, within nadCat 491.112 kb on + strand, within nadCat 491.113 kb on - strand, within nadCat 491.268 kb on - strand, within nadCat 491.268 kb on - strand, within nadCat 491.271 kb on - strand, within nadCat 491.271 kb on - strand, within nadCat 491.347 kb on + strand, within nadCat 491.348 kb on - strand, within nadCat 491.408 kb on + strand, within nadCat 491.531 kb on + strandat 491.552 kb on + strandat 491.552 kb on + strandat 491.552 kb on + strandat 491.552 kb on + strandat 491.560 kb on + strandat 491.560 kb on + strandat 491.560 kb on + strandat 491.561 kb on - strandat 491.595 kb on + strandat 491.596 kb on - strandat 491.609 kb on - strandat 491.697 kb on - strandat 491.817 kb on + strandat 491.861 kb on + strand, within ppdDat 491.861 kb on + strand, within ppdDat 491.861 kb on + strand, within ppdDat 491.893 kb on + strand, within ppdDat 491.894 kb on - strand, within ppdDat 491.924 kb on + strand, within ppdDat 491.924 kb on + strand, within ppdDat 491.924 kb on + strand, within ppdDat 491.924 kb on + strand, within ppdDat 491.925 kb on - strand, within ppdDat 491.925 kb on - strand, within ppdDat 491.925 kb on - strand, within ppdDat 491.925 kb on - strand, within ppdDat 491.925 kb on - strand, within ppdDat 491.925 kb on - strand, within ppdDat 491.984 kb on + strand, within ppdDat 491.985 kb on - strand, within ppdDat 491.985 kb on - strand, within ppdDat 491.989 kb on - strand, within ppdDat 492.037 kb on + strand, within ppdDat 492.038 kb on - strand, within ppdDat 492.104 kb on + strand, within ppdDat 492.236 kb on - strandat 492.252 kb on + strandat 492.252 kb on + strandat 492.252 kb on + strandat 492.253 kb on - strandat 492.253 kb on - strandat 492.391 kb on - strand, within gspEat 492.461 kb on + strand, within gspEat 492.461 kb on + strand, within gspEat 492.462 kb on - strand, within gspEat 492.572 kb on - strand, within gspE

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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489,765 + ampE NOLOHH_02865 0.65 +0.4
489,766 - ampE NOLOHH_02865 0.65 -0.0
489,766 - ampE NOLOHH_02865 0.65 +1.5
489,766 - ampE NOLOHH_02865 0.65 -0.8
489,786 - ampE NOLOHH_02865 0.67 -0.5
489,786 - ampE NOLOHH_02865 0.67 -0.3
489,810 + ampE NOLOHH_02865 0.70 -0.5
489,811 - ampE NOLOHH_02865 0.70 -0.9
489,874 + ampE NOLOHH_02865 0.78 -0.4
489,874 + ampE NOLOHH_02865 0.78 -0.5
489,874 + ampE NOLOHH_02865 0.78 +2.0
489,875 - ampE NOLOHH_02865 0.78 -0.1
489,898 + ampE NOLOHH_02865 0.80 -2.6
489,922 - ampE NOLOHH_02865 0.83 +0.4
490,045 + +1.0
490,046 - +0.8
490,046 - -0.2
490,053 + +0.4
490,053 + -0.8
490,053 + +0.0
490,057 + -0.3
490,057 + -0.6
490,058 - -0.3
490,058 - -0.1
490,058 - -0.7
490,146 - ampD NOLOHH_02870 0.15 +0.1
490,183 + ampD NOLOHH_02870 0.22 +0.8
490,240 + ampD NOLOHH_02870 0.32 +0.7
490,240 + ampD NOLOHH_02870 0.32 -0.2
490,240 + ampD NOLOHH_02870 0.32 -0.4
490,354 + ampD NOLOHH_02870 0.53 +0.5
490,355 - ampD NOLOHH_02870 0.53 -1.1
490,355 - ampD NOLOHH_02870 0.53 -0.5
490,355 - ampD NOLOHH_02870 0.53 -0.4
490,355 - ampD NOLOHH_02870 0.53 +0.3
490,362 + ampD NOLOHH_02870 0.54 -1.3
490,363 - ampD NOLOHH_02870 0.55 +0.3
490,448 + ampD NOLOHH_02870 0.70 +0.7
490,448 + ampD NOLOHH_02870 0.70 +0.2
490,448 + ampD NOLOHH_02870 0.70 +0.5
490,448 + ampD NOLOHH_02870 0.70 +0.1
490,462 - ampD NOLOHH_02870 0.72 +0.5
490,505 + ampD NOLOHH_02870 0.80 +1.1
490,509 - ampD NOLOHH_02870 0.81 -0.2
490,558 + -0.2
490,606 - +1.1
490,606 - +0.3
490,626 + -1.8
490,626 + +1.5
490,626 + +0.9
490,626 + +0.0
490,626 + +0.7
490,627 - +0.2
490,627 - +0.2
490,627 - -0.1
490,627 - -0.9
490,627 - -0.5
490,627 - +0.5
490,628 + +0.6
490,628 + +0.0
490,628 + -0.2
490,628 + +0.2
490,628 + -0.5
490,628 + -0.4
490,629 - -0.8
490,629 - +0.5
490,629 - -0.1
490,629 - -1.2
490,629 - -0.8
490,629 - -1.0
490,629 - -3.4
490,629 - -0.3
490,629 - -0.5
490,629 - -0.5
490,629 - -0.7
490,638 + -0.4
490,666 + -0.7
490,666 + -0.1
490,671 + -0.1
490,685 + -0.4
490,685 + +0.1
490,686 - -4.1
490,686 - -3.4
490,686 - -2.7
490,698 - -4.8
490,758 - -1.0
490,804 + nadC NOLOHH_02875 0.12 -2.1
490,832 + nadC NOLOHH_02875 0.15 -2.5
490,832 + nadC NOLOHH_02875 0.15 -0.2
490,833 - nadC NOLOHH_02875 0.15 -1.5
490,833 - nadC NOLOHH_02875 0.15 -0.4
490,934 + nadC NOLOHH_02875 0.26 -3.4
491,066 + nadC NOLOHH_02875 0.41 -4.2
491,105 - nadC NOLOHH_02875 0.45 -2.4
491,112 + nadC NOLOHH_02875 0.46 -5.4
491,112 + nadC NOLOHH_02875 0.46 -3.2
491,113 - nadC NOLOHH_02875 0.46 -3.7
491,268 - nadC NOLOHH_02875 0.63 -3.1
491,268 - nadC NOLOHH_02875 0.63 -3.0
491,271 - nadC NOLOHH_02875 0.64 -4.2
491,271 - nadC NOLOHH_02875 0.64 -2.1
491,347 + nadC NOLOHH_02875 0.72 -3.5
491,348 - nadC NOLOHH_02875 0.72 -3.2
491,408 + nadC NOLOHH_02875 0.79 -3.4
491,531 + -2.6
491,552 + -3.1
491,552 + -1.5
491,552 + -0.4
491,552 + -1.0
491,560 + -2.2
491,560 + -2.8
491,560 + -0.8
491,561 - -5.2
491,595 + -0.6
491,596 - -0.3
491,609 - +0.6
491,697 - -1.0
491,817 + -3.4
491,861 + ppdD NOLOHH_02880 0.15 -1.0
491,861 + ppdD NOLOHH_02880 0.15 +0.6
491,861 + ppdD NOLOHH_02880 0.15 +0.7
491,893 + ppdD NOLOHH_02880 0.22 -0.3
491,894 - ppdD NOLOHH_02880 0.22 +0.4
491,924 + ppdD NOLOHH_02880 0.29 -0.3
491,924 + ppdD NOLOHH_02880 0.29 -0.4
491,924 + ppdD NOLOHH_02880 0.29 +0.6
491,924 + ppdD NOLOHH_02880 0.29 +0.6
491,925 - ppdD NOLOHH_02880 0.29 +0.8
491,925 - ppdD NOLOHH_02880 0.29 +0.4
491,925 - ppdD NOLOHH_02880 0.29 +0.1
491,925 - ppdD NOLOHH_02880 0.29 +0.1
491,925 - ppdD NOLOHH_02880 0.29 +0.0
491,925 - ppdD NOLOHH_02880 0.29 -0.3
491,984 + ppdD NOLOHH_02880 0.42 +0.5
491,985 - ppdD NOLOHH_02880 0.43 -0.0
491,985 - ppdD NOLOHH_02880 0.43 -1.3
491,989 - ppdD NOLOHH_02880 0.44 +0.7
492,037 + ppdD NOLOHH_02880 0.54 -0.2
492,038 - ppdD NOLOHH_02880 0.55 -1.5
492,104 + ppdD NOLOHH_02880 0.70 +0.1
492,236 - +0.8
492,252 + +0.4
492,252 + +0.1
492,252 + +0.4
492,253 - -0.3
492,253 - -0.5
492,391 - gspE NOLOHH_02885 0.10 -0.6
492,461 + gspE NOLOHH_02885 0.15 +0.7
492,461 + gspE NOLOHH_02885 0.15 -1.7
492,462 - gspE NOLOHH_02885 0.16 -0.5
492,572 - gspE NOLOHH_02885 0.23 +0.6

Or see this region's nucleotide sequence