Strain Fitness in Escherichia coli ECOR27 around NOLOHH_02875
Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Casamino-acids |
---|---|---|---|---|---|
remove | |||||
489,765 | + | ampE | NOLOHH_02865 | 0.65 | +0.4 |
489,766 | - | ampE | NOLOHH_02865 | 0.65 | -0.0 |
489,766 | - | ampE | NOLOHH_02865 | 0.65 | +1.5 |
489,766 | - | ampE | NOLOHH_02865 | 0.65 | -0.8 |
489,786 | - | ampE | NOLOHH_02865 | 0.67 | -0.5 |
489,786 | - | ampE | NOLOHH_02865 | 0.67 | -0.3 |
489,810 | + | ampE | NOLOHH_02865 | 0.70 | -0.5 |
489,811 | - | ampE | NOLOHH_02865 | 0.70 | -0.9 |
489,874 | + | ampE | NOLOHH_02865 | 0.78 | -0.4 |
489,874 | + | ampE | NOLOHH_02865 | 0.78 | -0.5 |
489,874 | + | ampE | NOLOHH_02865 | 0.78 | +2.0 |
489,875 | - | ampE | NOLOHH_02865 | 0.78 | -0.1 |
489,898 | + | ampE | NOLOHH_02865 | 0.80 | -2.6 |
489,922 | - | ampE | NOLOHH_02865 | 0.83 | +0.4 |
490,045 | + | +1.0 | |||
490,046 | - | +0.8 | |||
490,046 | - | -0.2 | |||
490,053 | + | +0.4 | |||
490,053 | + | -0.8 | |||
490,053 | + | +0.0 | |||
490,057 | + | -0.3 | |||
490,057 | + | -0.6 | |||
490,058 | - | -0.3 | |||
490,058 | - | -0.1 | |||
490,058 | - | -0.7 | |||
490,146 | - | ampD | NOLOHH_02870 | 0.15 | +0.1 |
490,183 | + | ampD | NOLOHH_02870 | 0.22 | +0.8 |
490,240 | + | ampD | NOLOHH_02870 | 0.32 | +0.7 |
490,240 | + | ampD | NOLOHH_02870 | 0.32 | -0.2 |
490,240 | + | ampD | NOLOHH_02870 | 0.32 | -0.4 |
490,354 | + | ampD | NOLOHH_02870 | 0.53 | +0.5 |
490,355 | - | ampD | NOLOHH_02870 | 0.53 | -1.1 |
490,355 | - | ampD | NOLOHH_02870 | 0.53 | -0.5 |
490,355 | - | ampD | NOLOHH_02870 | 0.53 | -0.4 |
490,355 | - | ampD | NOLOHH_02870 | 0.53 | +0.3 |
490,362 | + | ampD | NOLOHH_02870 | 0.54 | -1.3 |
490,363 | - | ampD | NOLOHH_02870 | 0.55 | +0.3 |
490,448 | + | ampD | NOLOHH_02870 | 0.70 | +0.7 |
490,448 | + | ampD | NOLOHH_02870 | 0.70 | +0.2 |
490,448 | + | ampD | NOLOHH_02870 | 0.70 | +0.5 |
490,448 | + | ampD | NOLOHH_02870 | 0.70 | +0.1 |
490,462 | - | ampD | NOLOHH_02870 | 0.72 | +0.5 |
490,505 | + | ampD | NOLOHH_02870 | 0.80 | +1.1 |
490,509 | - | ampD | NOLOHH_02870 | 0.81 | -0.2 |
490,558 | + | -0.2 | |||
490,606 | - | +1.1 | |||
490,606 | - | +0.3 | |||
490,626 | + | -1.8 | |||
490,626 | + | +1.5 | |||
490,626 | + | +0.9 | |||
490,626 | + | +0.0 | |||
490,626 | + | +0.7 | |||
490,627 | - | +0.2 | |||
490,627 | - | +0.2 | |||
490,627 | - | -0.1 | |||
490,627 | - | -0.9 | |||
490,627 | - | -0.5 | |||
490,627 | - | +0.5 | |||
490,628 | + | +0.6 | |||
490,628 | + | +0.0 | |||
490,628 | + | -0.2 | |||
490,628 | + | +0.2 | |||
490,628 | + | -0.5 | |||
490,628 | + | -0.4 | |||
490,629 | - | -0.8 | |||
490,629 | - | +0.5 | |||
490,629 | - | -0.1 | |||
490,629 | - | -1.2 | |||
490,629 | - | -0.8 | |||
490,629 | - | -1.0 | |||
490,629 | - | -3.4 | |||
490,629 | - | -0.3 | |||
490,629 | - | -0.5 | |||
490,629 | - | -0.5 | |||
490,629 | - | -0.7 | |||
490,638 | + | -0.4 | |||
490,666 | + | -0.7 | |||
490,666 | + | -0.1 | |||
490,671 | + | -0.1 | |||
490,685 | + | -0.4 | |||
490,685 | + | +0.1 | |||
490,686 | - | -4.1 | |||
490,686 | - | -3.4 | |||
490,686 | - | -2.7 | |||
490,698 | - | -4.8 | |||
490,758 | - | -1.0 | |||
490,804 | + | nadC | NOLOHH_02875 | 0.12 | -2.1 |
490,832 | + | nadC | NOLOHH_02875 | 0.15 | -2.5 |
490,832 | + | nadC | NOLOHH_02875 | 0.15 | -0.2 |
490,833 | - | nadC | NOLOHH_02875 | 0.15 | -1.5 |
490,833 | - | nadC | NOLOHH_02875 | 0.15 | -0.4 |
490,934 | + | nadC | NOLOHH_02875 | 0.26 | -3.4 |
491,066 | + | nadC | NOLOHH_02875 | 0.41 | -4.2 |
491,105 | - | nadC | NOLOHH_02875 | 0.45 | -2.4 |
491,112 | + | nadC | NOLOHH_02875 | 0.46 | -5.4 |
491,112 | + | nadC | NOLOHH_02875 | 0.46 | -3.2 |
491,113 | - | nadC | NOLOHH_02875 | 0.46 | -3.7 |
491,268 | - | nadC | NOLOHH_02875 | 0.63 | -3.1 |
491,268 | - | nadC | NOLOHH_02875 | 0.63 | -3.0 |
491,271 | - | nadC | NOLOHH_02875 | 0.64 | -4.2 |
491,271 | - | nadC | NOLOHH_02875 | 0.64 | -2.1 |
491,347 | + | nadC | NOLOHH_02875 | 0.72 | -3.5 |
491,348 | - | nadC | NOLOHH_02875 | 0.72 | -3.2 |
491,408 | + | nadC | NOLOHH_02875 | 0.79 | -3.4 |
491,531 | + | -2.6 | |||
491,552 | + | -3.1 | |||
491,552 | + | -1.5 | |||
491,552 | + | -0.4 | |||
491,552 | + | -1.0 | |||
491,560 | + | -2.2 | |||
491,560 | + | -2.8 | |||
491,560 | + | -0.8 | |||
491,561 | - | -5.2 | |||
491,595 | + | -0.6 | |||
491,596 | - | -0.3 | |||
491,609 | - | +0.6 | |||
491,697 | - | -1.0 | |||
491,817 | + | -3.4 | |||
491,861 | + | ppdD | NOLOHH_02880 | 0.15 | -1.0 |
491,861 | + | ppdD | NOLOHH_02880 | 0.15 | +0.6 |
491,861 | + | ppdD | NOLOHH_02880 | 0.15 | +0.7 |
491,893 | + | ppdD | NOLOHH_02880 | 0.22 | -0.3 |
491,894 | - | ppdD | NOLOHH_02880 | 0.22 | +0.4 |
491,924 | + | ppdD | NOLOHH_02880 | 0.29 | -0.3 |
491,924 | + | ppdD | NOLOHH_02880 | 0.29 | -0.4 |
491,924 | + | ppdD | NOLOHH_02880 | 0.29 | +0.6 |
491,924 | + | ppdD | NOLOHH_02880 | 0.29 | +0.6 |
491,925 | - | ppdD | NOLOHH_02880 | 0.29 | +0.8 |
491,925 | - | ppdD | NOLOHH_02880 | 0.29 | +0.4 |
491,925 | - | ppdD | NOLOHH_02880 | 0.29 | +0.1 |
491,925 | - | ppdD | NOLOHH_02880 | 0.29 | +0.1 |
491,925 | - | ppdD | NOLOHH_02880 | 0.29 | +0.0 |
491,925 | - | ppdD | NOLOHH_02880 | 0.29 | -0.3 |
491,984 | + | ppdD | NOLOHH_02880 | 0.42 | +0.5 |
491,985 | - | ppdD | NOLOHH_02880 | 0.43 | -0.0 |
491,985 | - | ppdD | NOLOHH_02880 | 0.43 | -1.3 |
491,989 | - | ppdD | NOLOHH_02880 | 0.44 | +0.7 |
492,037 | + | ppdD | NOLOHH_02880 | 0.54 | -0.2 |
492,038 | - | ppdD | NOLOHH_02880 | 0.55 | -1.5 |
492,104 | + | ppdD | NOLOHH_02880 | 0.70 | +0.1 |
492,236 | - | +0.8 | |||
492,252 | + | +0.4 | |||
492,252 | + | +0.1 | |||
492,252 | + | +0.4 | |||
492,253 | - | -0.3 | |||
492,253 | - | -0.5 | |||
492,391 | - | gspE | NOLOHH_02885 | 0.10 | -0.6 |
492,461 | + | gspE | NOLOHH_02885 | 0.15 | +0.7 |
492,461 | + | gspE | NOLOHH_02885 | 0.15 | -1.7 |
492,462 | - | gspE | NOLOHH_02885 | 0.16 | -0.5 |
492,572 | - | gspE | NOLOHH_02885 | 0.23 | +0.6 |
Or see this region's nucleotide sequence