Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_02740 and panB are separated by 112 nucleotides panB and panC are separated by 11 nucleotides panC and rpnC are separated by 73 nucleotides
NOLOHH_02740: NOLOHH_02740 - fimbrial-like adhesin, at 458,610 to 459,884
_02740
NOLOHH_02745: panB - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 459,997 to 460,791
panB
NOLOHH_02750: panC - pantoate--beta-alanine ligase, at 460,803 to 461,654
panC
NOLOHH_02755: rpnC - recombination-promoting nuclease RpnC, at 461,728 to 462,630
rpnC
Position (kb) 460
461
462 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 459.824 kb on + strand at 459.824 kb on + strand at 459.824 kb on + strand at 459.824 kb on + strand at 459.825 kb on - strand at 459.827 kb on - strand at 459.832 kb on + strand at 459.833 kb on - strand at 459.833 kb on - strand at 459.860 kb on + strand at 459.876 kb on + strand at 459.885 kb on + strand at 459.885 kb on + strand at 459.885 kb on + strand at 459.885 kb on + strand at 459.885 kb on + strand at 459.885 kb on + strand at 459.885 kb on + strand at 459.886 kb on - strand at 459.886 kb on - strand at 459.886 kb on - strand at 459.928 kb on - strand at 459.956 kb on + strand at 459.957 kb on - strand at 459.984 kb on - strand at 460.032 kb on + strand at 460.032 kb on + strand at 460.032 kb on + strand at 460.032 kb on + strand at 460.033 kb on - strand at 460.091 kb on + strand, within panB at 460.188 kb on + strand, within panB at 460.201 kb on - strand, within panB at 460.257 kb on + strand, within panB at 460.264 kb on + strand, within panB at 460.323 kb on + strand, within panB at 460.324 kb on - strand, within panB at 460.324 kb on - strand, within panB at 460.394 kb on + strand, within panB at 460.394 kb on + strand, within panB at 460.445 kb on - strand, within panB at 460.505 kb on + strand, within panB at 460.505 kb on + strand, within panB at 460.566 kb on + strand, within panB at 460.735 kb on + strand at 460.735 kb on + strand at 460.735 kb on + strand at 460.735 kb on + strand at 460.735 kb on + strand at 460.736 kb on - strand at 460.736 kb on - strand at 460.736 kb on - strand at 460.736 kb on - strand at 460.736 kb on - strand at 460.736 kb on - strand at 460.736 kb on - strand at 460.737 kb on + strand at 460.737 kb on + strand at 460.738 kb on - strand at 460.738 kb on - strand at 460.738 kb on - strand at 460.808 kb on - strand at 460.886 kb on + strand at 460.886 kb on + strand at 460.887 kb on - strand at 460.964 kb on + strand, within panC at 461.047 kb on + strand, within panC at 461.047 kb on + strand, within panC at 461.057 kb on + strand, within panC at 461.057 kb on + strand, within panC at 461.057 kb on + strand, within panC at 461.058 kb on - strand, within panC at 461.058 kb on - strand, within panC at 461.120 kb on + strand, within panC at 461.121 kb on - strand, within panC at 461.124 kb on + strand, within panC at 461.124 kb on + strand, within panC at 461.124 kb on + strand, within panC at 461.125 kb on - strand, within panC at 461.125 kb on - strand, within panC at 461.125 kb on - strand, within panC at 461.125 kb on - strand, within panC at 461.125 kb on - strand, within panC at 461.125 kb on - strand, within panC at 461.333 kb on + strand, within panC at 461.333 kb on + strand, within panC at 461.333 kb on + strand, within panC at 461.334 kb on - strand, within panC at 461.587 kb on + strand at 461.652 kb on + strand at 461.655 kb on + strand at 461.655 kb on + strand at 461.655 kb on + strand at 461.656 kb on - strand at 461.656 kb on - strand at 461.656 kb on - strand at 461.660 kb on - strand at 461.689 kb on - strand at 461.689 kb on - strand at 461.692 kb on - strand at 461.697 kb on - strand at 461.716 kb on - strand at 461.716 kb on - strand at 461.725 kb on - strand at 461.725 kb on - strand at 461.729 kb on + strand at 461.729 kb on + strand at 461.729 kb on + strand at 461.730 kb on - strand at 461.730 kb on - strand at 461.733 kb on + strand at 461.734 kb on - strand at 461.739 kb on + strand at 461.740 kb on - strand at 461.740 kb on - strand at 461.743 kb on + strand at 461.743 kb on + strand at 461.744 kb on - strand at 461.744 kb on - strand at 461.744 kb on - strand at 461.749 kb on - strand at 461.809 kb on - strand at 461.813 kb on - strand at 461.813 kb on - strand at 461.813 kb on - strand at 461.910 kb on + strand, within rpnC at 461.911 kb on - strand, within rpnC at 461.948 kb on + strand, within rpnC at 461.971 kb on - strand, within rpnC at 461.988 kb on + strand, within rpnC at 461.989 kb on - strand, within rpnC at 461.989 kb on - strand, within rpnC at 461.990 kb on + strand, within rpnC at 461.990 kb on + strand, within rpnC at 461.990 kb on + strand, within rpnC at 461.991 kb on - strand, within rpnC at 461.991 kb on - strand, within rpnC at 462.007 kb on + strand, within rpnC at 462.007 kb on + strand, within rpnC at 462.008 kb on - strand, within rpnC at 462.026 kb on + strand, within rpnC at 462.026 kb on + strand, within rpnC at 462.065 kb on - strand, within rpnC at 462.070 kb on + strand, within rpnC at 462.070 kb on + strand, within rpnC at 462.070 kb on + strand, within rpnC at 462.070 kb on + strand, within rpnC at 462.070 kb on + strand, within rpnC at 462.070 kb on + strand, within rpnC at 462.071 kb on - strand, within rpnC at 462.071 kb on - strand, within rpnC at 462.087 kb on + strand, within rpnC at 462.088 kb on - strand, within rpnC at 462.183 kb on + strand, within rpnC at 462.184 kb on - strand, within rpnC at 462.185 kb on + strand, within rpnC at 462.185 kb on + strand, within rpnC at 462.213 kb on - strand, within rpnC at 462.218 kb on - strand, within rpnC at 462.218 kb on - strand, within rpnC at 462.266 kb on + strand, within rpnC at 462.267 kb on - strand, within rpnC at 462.336 kb on + strand, within rpnC at 462.336 kb on + strand, within rpnC at 462.337 kb on - strand, within rpnC at 462.337 kb on - strand, within rpnC at 462.438 kb on - strand, within rpnC at 462.438 kb on - strand, within rpnC at 462.494 kb on - strand, within rpnC at 462.545 kb on - strand at 462.580 kb on + strand at 462.592 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 459,824 + +0.1 459,824 + -0.6 459,824 + -1.6 459,824 + -0.1 459,825 - +0.1 459,827 - -0.6 459,832 + -0.4 459,833 - -0.4 459,833 - -1.6 459,860 + +0.7 459,876 + -0.1 459,885 + +0.3 459,885 + -2.6 459,885 + +1.6 459,885 + +0.5 459,885 + +1.0 459,885 + -0.2 459,885 + +0.9 459,886 - +1.7 459,886 - +0.1 459,886 - +0.4 459,928 - -0.3 459,956 + +0.7 459,957 - +0.1 459,984 - -4.1 460,032 + -2.7 460,032 + -1.6 460,032 + -1.6 460,032 + -1.0 460,033 - -2.3 460,091 + panB NOLOHH_02745 0.12 -2.5 460,188 + panB NOLOHH_02745 0.24 -4.5 460,201 - panB NOLOHH_02745 0.26 -1.8 460,257 + panB NOLOHH_02745 0.33 -0.1 460,264 + panB NOLOHH_02745 0.34 -3.3 460,323 + panB NOLOHH_02745 0.41 -2.8 460,324 - panB NOLOHH_02745 0.41 -2.8 460,324 - panB NOLOHH_02745 0.41 -0.7 460,394 + panB NOLOHH_02745 0.50 -2.6 460,394 + panB NOLOHH_02745 0.50 -2.5 460,445 - panB NOLOHH_02745 0.56 -1.9 460,505 + panB NOLOHH_02745 0.64 -5.3 460,505 + panB NOLOHH_02745 0.64 -0.9 460,566 + panB NOLOHH_02745 0.72 -1.9 460,735 + -0.7 460,735 + -1.3 460,735 + -2.1 460,735 + -4.0 460,735 + -2.8 460,736 - -2.8 460,736 - -3.6 460,736 - -1.3 460,736 - -4.7 460,736 - -2.1 460,736 - -2.7 460,736 - -2.4 460,737 + -2.0 460,737 + -1.0 460,738 - -2.1 460,738 - -0.6 460,738 - -2.3 460,808 - -0.3 460,886 + +2.6 460,886 + -4.1 460,887 - -2.2 460,964 + panC NOLOHH_02750 0.19 -1.0 461,047 + panC NOLOHH_02750 0.29 -1.8 461,047 + panC NOLOHH_02750 0.29 -4.0 461,057 + panC NOLOHH_02750 0.30 -3.8 461,057 + panC NOLOHH_02750 0.30 -1.4 461,057 + panC NOLOHH_02750 0.30 -4.1 461,058 - panC NOLOHH_02750 0.30 -2.6 461,058 - panC NOLOHH_02750 0.30 -2.0 461,120 + panC NOLOHH_02750 0.37 -1.6 461,121 - panC NOLOHH_02750 0.37 -1.8 461,124 + panC NOLOHH_02750 0.38 -3.6 461,124 + panC NOLOHH_02750 0.38 -2.0 461,124 + panC NOLOHH_02750 0.38 -1.4 461,125 - panC NOLOHH_02750 0.38 -0.3 461,125 - panC NOLOHH_02750 0.38 -4.1 461,125 - panC NOLOHH_02750 0.38 -5.1 461,125 - panC NOLOHH_02750 0.38 +0.5 461,125 - panC NOLOHH_02750 0.38 -1.8 461,125 - panC NOLOHH_02750 0.38 -2.4 461,333 + panC NOLOHH_02750 0.62 -0.8 461,333 + panC NOLOHH_02750 0.62 -0.4 461,333 + panC NOLOHH_02750 0.62 -2.8 461,334 - panC NOLOHH_02750 0.62 -1.9 461,587 + -1.9 461,652 + -0.7 461,655 + +0.2 461,655 + +0.4 461,655 + +0.0 461,656 - +0.3 461,656 - -0.5 461,656 - +0.3 461,660 - -0.1 461,689 - +0.9 461,689 - -0.0 461,692 - -0.2 461,697 - +0.3 461,716 - -0.8 461,716 - +0.5 461,725 - -0.3 461,725 - +0.4 461,729 + -0.2 461,729 + -0.6 461,729 + +0.3 461,730 - -0.1 461,730 - -0.2 461,733 + +0.7 461,734 - -3.1 461,739 + -0.4 461,740 - -0.2 461,740 - +0.2 461,743 + +1.8 461,743 + -1.1 461,744 - +0.4 461,744 - +0.1 461,744 - +1.1 461,749 - +0.6 461,809 - +0.6 461,813 - +0.5 461,813 - -0.4 461,813 - +0.1 461,910 + rpnC NOLOHH_02755 0.20 +0.1 461,911 - rpnC NOLOHH_02755 0.20 -0.3 461,948 + rpnC NOLOHH_02755 0.24 -1.4 461,971 - rpnC NOLOHH_02755 0.27 +0.2 461,988 + rpnC NOLOHH_02755 0.29 +0.8 461,989 - rpnC NOLOHH_02755 0.29 -2.6 461,989 - rpnC NOLOHH_02755 0.29 +0.6 461,990 + rpnC NOLOHH_02755 0.29 -0.1 461,990 + rpnC NOLOHH_02755 0.29 -0.5 461,990 + rpnC NOLOHH_02755 0.29 -0.3 461,991 - rpnC NOLOHH_02755 0.29 -0.1 461,991 - rpnC NOLOHH_02755 0.29 +2.4 462,007 + rpnC NOLOHH_02755 0.31 -2.4 462,007 + rpnC NOLOHH_02755 0.31 +0.3 462,008 - rpnC NOLOHH_02755 0.31 -0.1 462,026 + rpnC NOLOHH_02755 0.33 +0.9 462,026 + rpnC NOLOHH_02755 0.33 -1.2 462,065 - rpnC NOLOHH_02755 0.37 -1.4 462,070 + rpnC NOLOHH_02755 0.38 +0.2 462,070 + rpnC NOLOHH_02755 0.38 +1.5 462,070 + rpnC NOLOHH_02755 0.38 +0.4 462,070 + rpnC NOLOHH_02755 0.38 -0.1 462,070 + rpnC NOLOHH_02755 0.38 +0.5 462,070 + rpnC NOLOHH_02755 0.38 -0.3 462,071 - rpnC NOLOHH_02755 0.38 +1.4 462,071 - rpnC NOLOHH_02755 0.38 -0.2 462,087 + rpnC NOLOHH_02755 0.40 -0.5 462,088 - rpnC NOLOHH_02755 0.40 +1.1 462,183 + rpnC NOLOHH_02755 0.50 +1.6 462,184 - rpnC NOLOHH_02755 0.50 +0.1 462,185 + rpnC NOLOHH_02755 0.51 +0.4 462,185 + rpnC NOLOHH_02755 0.51 +1.8 462,213 - rpnC NOLOHH_02755 0.54 -0.7 462,218 - rpnC NOLOHH_02755 0.54 -0.1 462,218 - rpnC NOLOHH_02755 0.54 +0.5 462,266 + rpnC NOLOHH_02755 0.60 +0.2 462,267 - rpnC NOLOHH_02755 0.60 +2.9 462,336 + rpnC NOLOHH_02755 0.67 +1.9 462,336 + rpnC NOLOHH_02755 0.67 -0.5 462,337 - rpnC NOLOHH_02755 0.67 +0.2 462,337 - rpnC NOLOHH_02755 0.67 +0.4 462,438 - rpnC NOLOHH_02755 0.79 -0.2 462,438 - rpnC NOLOHH_02755 0.79 +0.2 462,494 - rpnC NOLOHH_02755 0.85 -0.3 462,545 - +0.7 462,580 + -1.5 462,592 - -0.6
Or see this region's nucleotide sequence