Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_02740 and panB are separated by 112 nucleotides panB and panC are separated by 11 nucleotides panC and rpnC are separated by 73 nucleotides
NOLOHH_02740: NOLOHH_02740 - fimbrial-like adhesin, at 458,610 to 459,884
_02740
NOLOHH_02745: panB - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 459,997 to 460,791
panB
NOLOHH_02750: panC - pantoate--beta-alanine ligase, at 460,803 to 461,654
panC
NOLOHH_02755: rpnC - recombination-promoting nuclease RpnC, at 461,728 to 462,630
rpnC
Position (kb) 459
460
461 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 459.071 kb on + strand, within NOLOHH_02740 at 459.087 kb on + strand, within NOLOHH_02740 at 459.088 kb on - strand, within NOLOHH_02740 at 459.148 kb on - strand, within NOLOHH_02740 at 459.332 kb on - strand, within NOLOHH_02740 at 459.341 kb on + strand, within NOLOHH_02740 at 459.459 kb on + strand, within NOLOHH_02740 at 459.461 kb on + strand, within NOLOHH_02740 at 459.599 kb on + strand, within NOLOHH_02740 at 459.599 kb on + strand, within NOLOHH_02740 at 459.644 kb on - strand, within NOLOHH_02740 at 459.659 kb on + strand, within NOLOHH_02740 at 459.660 kb on - strand, within NOLOHH_02740 at 459.673 kb on + strand, within NOLOHH_02740 at 459.689 kb on + strand, within NOLOHH_02740 at 459.690 kb on - strand, within NOLOHH_02740 at 459.776 kb on + strand at 459.776 kb on + strand at 459.778 kb on + strand at 459.778 kb on + strand at 459.778 kb on + strand at 459.778 kb on + strand at 459.783 kb on + strand at 459.783 kb on + strand at 459.783 kb on + strand at 459.783 kb on + strand at 459.783 kb on + strand at 459.824 kb on + strand at 459.824 kb on + strand at 459.824 kb on + strand at 459.824 kb on + strand at 459.825 kb on - strand at 459.827 kb on - strand at 459.832 kb on + strand at 459.833 kb on - strand at 459.833 kb on - strand at 459.860 kb on + strand at 459.876 kb on + strand at 459.885 kb on + strand at 459.885 kb on + strand at 459.885 kb on + strand at 459.885 kb on + strand at 459.885 kb on + strand at 459.885 kb on + strand at 459.885 kb on + strand at 459.886 kb on - strand at 459.886 kb on - strand at 459.886 kb on - strand at 459.928 kb on - strand at 459.956 kb on + strand at 459.957 kb on - strand at 459.984 kb on - strand at 460.032 kb on + strand at 460.032 kb on + strand at 460.032 kb on + strand at 460.032 kb on + strand at 460.033 kb on - strand at 460.091 kb on + strand, within panB at 460.188 kb on + strand, within panB at 460.201 kb on - strand, within panB at 460.257 kb on + strand, within panB at 460.264 kb on + strand, within panB at 460.323 kb on + strand, within panB at 460.324 kb on - strand, within panB at 460.324 kb on - strand, within panB at 460.394 kb on + strand, within panB at 460.394 kb on + strand, within panB at 460.445 kb on - strand, within panB at 460.505 kb on + strand, within panB at 460.505 kb on + strand, within panB at 460.566 kb on + strand, within panB at 460.735 kb on + strand at 460.735 kb on + strand at 460.735 kb on + strand at 460.735 kb on + strand at 460.735 kb on + strand at 460.736 kb on - strand at 460.736 kb on - strand at 460.736 kb on - strand at 460.736 kb on - strand at 460.736 kb on - strand at 460.736 kb on - strand at 460.736 kb on - strand at 460.737 kb on + strand at 460.737 kb on + strand at 460.738 kb on - strand at 460.738 kb on - strand at 460.738 kb on - strand at 460.808 kb on - strand at 460.886 kb on + strand at 460.886 kb on + strand at 460.887 kb on - strand at 460.964 kb on + strand, within panC at 461.047 kb on + strand, within panC at 461.047 kb on + strand, within panC at 461.057 kb on + strand, within panC at 461.057 kb on + strand, within panC at 461.057 kb on + strand, within panC at 461.058 kb on - strand, within panC at 461.058 kb on - strand, within panC at 461.120 kb on + strand, within panC at 461.121 kb on - strand, within panC at 461.124 kb on + strand, within panC at 461.124 kb on + strand, within panC at 461.124 kb on + strand, within panC at 461.125 kb on - strand, within panC at 461.125 kb on - strand, within panC at 461.125 kb on - strand, within panC at 461.125 kb on - strand, within panC at 461.125 kb on - strand, within panC at 461.125 kb on - strand, within panC at 461.333 kb on + strand, within panC at 461.333 kb on + strand, within panC at 461.333 kb on + strand, within panC at 461.334 kb on - strand, within panC at 461.587 kb on + strand at 461.652 kb on + strand at 461.655 kb on + strand at 461.655 kb on + strand at 461.655 kb on + strand at 461.656 kb on - strand at 461.656 kb on - strand at 461.656 kb on - strand at 461.660 kb on - strand at 461.689 kb on - strand at 461.689 kb on - strand at 461.692 kb on - strand at 461.697 kb on - strand at 461.716 kb on - strand at 461.716 kb on - strand at 461.725 kb on - strand at 461.725 kb on - strand at 461.729 kb on + strand at 461.729 kb on + strand at 461.729 kb on + strand at 461.730 kb on - strand at 461.730 kb on - strand at 461.733 kb on + strand at 461.734 kb on - strand at 461.739 kb on + strand at 461.740 kb on - strand at 461.740 kb on - strand at 461.743 kb on + strand at 461.743 kb on + strand at 461.744 kb on - strand at 461.744 kb on - strand at 461.744 kb on - strand at 461.749 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 459,071 + NOLOHH_02740 0.36 +1.2 459,087 + NOLOHH_02740 0.37 -0.1 459,088 - NOLOHH_02740 0.37 -0.4 459,148 - NOLOHH_02740 0.42 +0.4 459,332 - NOLOHH_02740 0.57 +0.2 459,341 + NOLOHH_02740 0.57 -0.1 459,459 + NOLOHH_02740 0.67 +0.5 459,461 + NOLOHH_02740 0.67 +0.1 459,599 + NOLOHH_02740 0.78 +0.1 459,599 + NOLOHH_02740 0.78 +1.4 459,644 - NOLOHH_02740 0.81 -2.9 459,659 + NOLOHH_02740 0.82 +0.9 459,660 - NOLOHH_02740 0.82 -2.3 459,673 + NOLOHH_02740 0.83 +0.0 459,689 + NOLOHH_02740 0.85 +0.1 459,690 - NOLOHH_02740 0.85 +0.1 459,776 + +0.5 459,776 + -1.0 459,778 + +0.2 459,778 + +0.2 459,778 + +0.2 459,778 + +0.3 459,783 + -2.8 459,783 + +0.2 459,783 + -0.5 459,783 + -0.4 459,783 + +0.3 459,824 + +0.1 459,824 + -0.6 459,824 + -1.6 459,824 + -0.1 459,825 - +0.1 459,827 - -0.6 459,832 + -0.4 459,833 - -0.4 459,833 - -1.6 459,860 + +0.7 459,876 + -0.1 459,885 + +0.3 459,885 + -2.6 459,885 + +1.6 459,885 + +0.5 459,885 + +1.0 459,885 + -0.2 459,885 + +0.9 459,886 - +1.7 459,886 - +0.1 459,886 - +0.4 459,928 - -0.3 459,956 + +0.7 459,957 - +0.1 459,984 - -4.1 460,032 + -2.7 460,032 + -1.6 460,032 + -1.6 460,032 + -1.0 460,033 - -2.3 460,091 + panB NOLOHH_02745 0.12 -2.5 460,188 + panB NOLOHH_02745 0.24 -4.5 460,201 - panB NOLOHH_02745 0.26 -1.8 460,257 + panB NOLOHH_02745 0.33 -0.1 460,264 + panB NOLOHH_02745 0.34 -3.3 460,323 + panB NOLOHH_02745 0.41 -2.8 460,324 - panB NOLOHH_02745 0.41 -2.8 460,324 - panB NOLOHH_02745 0.41 -0.7 460,394 + panB NOLOHH_02745 0.50 -2.6 460,394 + panB NOLOHH_02745 0.50 -2.5 460,445 - panB NOLOHH_02745 0.56 -1.9 460,505 + panB NOLOHH_02745 0.64 -5.3 460,505 + panB NOLOHH_02745 0.64 -0.9 460,566 + panB NOLOHH_02745 0.72 -1.9 460,735 + -0.7 460,735 + -1.3 460,735 + -2.1 460,735 + -4.0 460,735 + -2.8 460,736 - -2.8 460,736 - -3.6 460,736 - -1.3 460,736 - -4.7 460,736 - -2.1 460,736 - -2.7 460,736 - -2.4 460,737 + -2.0 460,737 + -1.0 460,738 - -2.1 460,738 - -0.6 460,738 - -2.3 460,808 - -0.3 460,886 + +2.6 460,886 + -4.1 460,887 - -2.2 460,964 + panC NOLOHH_02750 0.19 -1.0 461,047 + panC NOLOHH_02750 0.29 -1.8 461,047 + panC NOLOHH_02750 0.29 -4.0 461,057 + panC NOLOHH_02750 0.30 -3.8 461,057 + panC NOLOHH_02750 0.30 -1.4 461,057 + panC NOLOHH_02750 0.30 -4.1 461,058 - panC NOLOHH_02750 0.30 -2.6 461,058 - panC NOLOHH_02750 0.30 -2.0 461,120 + panC NOLOHH_02750 0.37 -1.6 461,121 - panC NOLOHH_02750 0.37 -1.8 461,124 + panC NOLOHH_02750 0.38 -3.6 461,124 + panC NOLOHH_02750 0.38 -2.0 461,124 + panC NOLOHH_02750 0.38 -1.4 461,125 - panC NOLOHH_02750 0.38 -0.3 461,125 - panC NOLOHH_02750 0.38 -4.1 461,125 - panC NOLOHH_02750 0.38 -5.1 461,125 - panC NOLOHH_02750 0.38 +0.5 461,125 - panC NOLOHH_02750 0.38 -1.8 461,125 - panC NOLOHH_02750 0.38 -2.4 461,333 + panC NOLOHH_02750 0.62 -0.8 461,333 + panC NOLOHH_02750 0.62 -0.4 461,333 + panC NOLOHH_02750 0.62 -2.8 461,334 - panC NOLOHH_02750 0.62 -1.9 461,587 + -1.9 461,652 + -0.7 461,655 + +0.2 461,655 + +0.4 461,655 + +0.0 461,656 - +0.3 461,656 - -0.5 461,656 - +0.3 461,660 - -0.1 461,689 - +0.9 461,689 - -0.0 461,692 - -0.2 461,697 - +0.3 461,716 - -0.8 461,716 - +0.5 461,725 - -0.3 461,725 - +0.4 461,729 + -0.2 461,729 + -0.6 461,729 + +0.3 461,730 - -0.1 461,730 - -0.2 461,733 + +0.7 461,734 - -3.1 461,739 + -0.4 461,740 - -0.2 461,740 - +0.2 461,743 + +1.8 461,743 + -1.1 461,744 - +0.4 461,744 - +0.1 461,744 - +1.1 461,749 - +0.6
Or see this region's nucleotide sequence