Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glnD and dapD are separated by 30 nucleotides dapD and yaeH are separated by 311 nucleotides yaeH and cdaR are separated by 88 nucleotides
NOLOHH_02580: glnD - bifunctional uridylyltransferase/uridylyl-removing protein GlnD, at 421,739 to 424,411
glnD
NOLOHH_02585: dapD - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 424,442 to 425,266
dapD
NOLOHH_02590: yaeH - DUF3461 domain-containing protein, at 425,578 to 425,964
yaeH
NOLOHH_02595: cdaR - DNA-binding transcriptional regulator CdaR, at 426,053 to 427,210
cdaR
Position (kb) 424
425
426 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 425.264 kb on + strand at 425.264 kb on + strand at 425.270 kb on + strand at 425.271 kb on - strand at 425.271 kb on - strand at 425.271 kb on - strand at 425.274 kb on + strand at 425.274 kb on + strand at 425.274 kb on + strand at 425.274 kb on + strand at 425.274 kb on + strand at 425.274 kb on + strand at 425.274 kb on + strand at 425.274 kb on + strand at 425.274 kb on + strand at 425.274 kb on + strand at 425.274 kb on + strand at 425.275 kb on - strand at 425.275 kb on - strand at 425.275 kb on - strand at 425.275 kb on - strand at 425.275 kb on - strand at 425.276 kb on + strand at 425.276 kb on + strand at 425.276 kb on + strand at 425.277 kb on - strand at 425.318 kb on + strand at 425.328 kb on + strand at 425.329 kb on - strand at 425.329 kb on - strand at 425.329 kb on - strand at 425.329 kb on - strand at 425.329 kb on - strand at 425.351 kb on - strand at 425.351 kb on - strand at 425.384 kb on + strand at 425.384 kb on + strand at 425.384 kb on + strand at 425.385 kb on - strand at 425.385 kb on - strand at 425.412 kb on - strand at 425.412 kb on - strand at 425.439 kb on + strand at 425.440 kb on - strand at 425.537 kb on + strand at 425.543 kb on - strand at 425.554 kb on - strand at 425.572 kb on - strand at 425.577 kb on + strand at 425.577 kb on + strand at 425.577 kb on + strand at 425.581 kb on + strand at 425.582 kb on - strand at 425.582 kb on - strand at 425.607 kb on + strand at 425.607 kb on + strand at 425.721 kb on + strand, within yaeH at 425.722 kb on - strand, within yaeH at 425.775 kb on + strand, within yaeH at 425.871 kb on + strand, within yaeH at 425.888 kb on + strand, within yaeH at 425.888 kb on + strand, within yaeH at 425.888 kb on + strand, within yaeH at 425.889 kb on - strand, within yaeH at 425.889 kb on - strand, within yaeH at 425.889 kb on - strand, within yaeH at 425.910 kb on - strand, within yaeH at 425.916 kb on + strand, within yaeH at 425.959 kb on - strand at 425.981 kb on - strand at 426.042 kb on + strand at 426.049 kb on + strand at 426.084 kb on + strand at 426.085 kb on - strand at 426.085 kb on - strand at 426.085 kb on - strand at 426.085 kb on - strand at 426.139 kb on + strand at 426.139 kb on + strand at 426.139 kb on + strand at 426.139 kb on + strand at 426.139 kb on + strand at 426.140 kb on - strand at 426.140 kb on - strand at 426.140 kb on - strand at 426.140 kb on - strand at 426.140 kb on - strand at 426.166 kb on + strand at 426.175 kb on + strand, within cdaR
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 425,264 + -0.5 425,264 + +0.5 425,270 + +1.1 425,271 - +0.7 425,271 - +0.6 425,271 - +1.2 425,274 + +0.8 425,274 + +0.1 425,274 + -0.4 425,274 + -1.1 425,274 + +0.4 425,274 + -0.6 425,274 + +0.4 425,274 + +0.6 425,274 + -0.4 425,274 + -3.0 425,274 + +0.3 425,275 - -0.1 425,275 - +0.2 425,275 - -2.6 425,275 - -0.4 425,275 - +0.8 425,276 + +1.0 425,276 + +0.1 425,276 + -0.1 425,277 - -1.2 425,318 + +0.5 425,328 + -0.8 425,329 - +0.0 425,329 - +0.3 425,329 - +0.4 425,329 - +0.1 425,329 - +0.4 425,351 - +0.7 425,351 - -0.4 425,384 + +0.5 425,384 + -1.4 425,384 + -0.5 425,385 - -1.3 425,385 - +0.2 425,412 - +1.2 425,412 - +1.1 425,439 + +0.9 425,440 - +0.1 425,537 + +0.3 425,543 - +0.1 425,554 - +1.7 425,572 - +0.4 425,577 + +0.5 425,577 + -0.5 425,577 + -0.9 425,581 + +1.4 425,582 - +0.7 425,582 - -2.9 425,607 + +1.0 425,607 + +0.8 425,721 + yaeH NOLOHH_02590 0.37 +0.6 425,722 - yaeH NOLOHH_02590 0.37 -0.7 425,775 + yaeH NOLOHH_02590 0.51 +1.6 425,871 + yaeH NOLOHH_02590 0.76 -0.0 425,888 + yaeH NOLOHH_02590 0.80 +0.2 425,888 + yaeH NOLOHH_02590 0.80 -0.1 425,888 + yaeH NOLOHH_02590 0.80 +0.2 425,889 - yaeH NOLOHH_02590 0.80 +2.0 425,889 - yaeH NOLOHH_02590 0.80 +1.1 425,889 - yaeH NOLOHH_02590 0.80 +1.3 425,910 - yaeH NOLOHH_02590 0.86 -0.8 425,916 + yaeH NOLOHH_02590 0.87 -1.4 425,959 - -2.5 425,981 - -0.2 426,042 + -1.8 426,049 + +0.4 426,084 + +0.7 426,085 - -0.6 426,085 - -0.4 426,085 - +0.7 426,085 - +0.1 426,139 + -1.4 426,139 + -1.1 426,139 + -3.4 426,139 + -0.3 426,139 + -1.0 426,140 - +0.1 426,140 - +0.1 426,140 - -1.2 426,140 - +0.1 426,140 - +0.2 426,166 + -0.7 426,175 + cdaR NOLOHH_02595 0.11 +1.5
Or see this region's nucleotide sequence