Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ecpR and ecpA are separated by 74 nucleotides ecpA and ecpB are separated by 57 nucleotides ecpB and ecpC are separated by 25 nucleotides
NOLOHH_01975: ecpR - ECP biosynthesis operon DNA-binding transcriptional regulator EcpR, at 302,145 to 302,687
ecpR
NOLOHH_01980: ecpA - common pilus major fimbrillin subunit EcpA, at 302,762 to 303,349
ecpA
NOLOHH_01985: ecpB - fimbrial chaperone EcpB, at 303,407 to 304,075
ecpB
NOLOHH_01990: ecpC - fimbrial usher EcpC, at 304,101 to 306,626
ecpC
Position (kb) 302
303
304 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 302.096 kb on - strand at 302.202 kb on + strand, within ecpR at 302.415 kb on + strand, within ecpR at 302.582 kb on + strand, within ecpR at 302.625 kb on + strand, within ecpR at 302.626 kb on - strand, within ecpR at 302.670 kb on + strand at 302.672 kb on + strand at 302.672 kb on + strand at 302.708 kb on - strand at 302.784 kb on + strand at 302.784 kb on + strand at 302.835 kb on + strand, within ecpA at 302.835 kb on + strand, within ecpA at 302.930 kb on + strand, within ecpA at 302.931 kb on - strand, within ecpA at 302.953 kb on + strand, within ecpA at 302.954 kb on - strand, within ecpA at 302.970 kb on + strand, within ecpA at 302.971 kb on - strand, within ecpA at 303.014 kb on - strand, within ecpA at 303.032 kb on - strand, within ecpA at 303.046 kb on - strand, within ecpA at 303.092 kb on + strand, within ecpA at 303.093 kb on - strand, within ecpA at 303.095 kb on - strand, within ecpA at 303.170 kb on - strand, within ecpA at 303.189 kb on - strand, within ecpA at 303.189 kb on - strand, within ecpA at 303.259 kb on + strand, within ecpA at 303.279 kb on - strand, within ecpA at 303.321 kb on + strand at 303.321 kb on + strand at 303.347 kb on + strand at 303.347 kb on + strand at 303.347 kb on + strand at 303.348 kb on - strand at 303.348 kb on - strand at 303.406 kb on + strand at 303.481 kb on + strand, within ecpB at 303.482 kb on - strand, within ecpB at 303.482 kb on - strand, within ecpB at 303.482 kb on - strand, within ecpB at 303.483 kb on + strand, within ecpB at 303.483 kb on + strand, within ecpB at 303.484 kb on - strand, within ecpB at 303.557 kb on - strand, within ecpB at 303.607 kb on + strand, within ecpB at 303.636 kb on + strand, within ecpB at 303.637 kb on - strand, within ecpB at 303.695 kb on + strand, within ecpB at 303.695 kb on + strand, within ecpB at 303.696 kb on - strand, within ecpB at 303.696 kb on - strand, within ecpB at 303.696 kb on - strand, within ecpB at 303.696 kb on - strand, within ecpB at 303.696 kb on - strand, within ecpB at 303.696 kb on - strand, within ecpB at 303.697 kb on + strand, within ecpB at 303.726 kb on - strand, within ecpB at 303.854 kb on + strand, within ecpB at 303.854 kb on + strand, within ecpB at 303.855 kb on - strand, within ecpB at 303.867 kb on - strand, within ecpB at 303.889 kb on + strand, within ecpB at 303.890 kb on - strand, within ecpB at 303.890 kb on - strand, within ecpB at 303.968 kb on + strand, within ecpB at 303.972 kb on - strand, within ecpB at 304.001 kb on - strand, within ecpB at 304.054 kb on + strand at 304.054 kb on + strand at 304.054 kb on + strand at 304.073 kb on + strand at 304.073 kb on + strand at 304.073 kb on + strand at 304.073 kb on + strand at 304.073 kb on + strand at 304.077 kb on + strand at 304.078 kb on - strand at 304.195 kb on + strand at 304.196 kb on - strand at 304.196 kb on - strand at 304.210 kb on + strand at 304.211 kb on - strand at 304.275 kb on + strand at 304.275 kb on + strand at 304.275 kb on + strand at 304.276 kb on - strand at 304.276 kb on - strand at 304.276 kb on - strand at 304.276 kb on - strand at 304.277 kb on + strand at 304.278 kb on - strand at 304.334 kb on + strand at 304.335 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 302,096 - -3.4 302,202 + ecpR NOLOHH_01975 0.10 -0.3 302,415 + ecpR NOLOHH_01975 0.50 -0.7 302,582 + ecpR NOLOHH_01975 0.80 +0.7 302,625 + ecpR NOLOHH_01975 0.88 +0.7 302,626 - ecpR NOLOHH_01975 0.89 +0.7 302,670 + +0.6 302,672 + +0.9 302,672 + +0.5 302,708 - +0.5 302,784 + -0.2 302,784 + +1.0 302,835 + ecpA NOLOHH_01980 0.12 +0.1 302,835 + ecpA NOLOHH_01980 0.12 +0.4 302,930 + ecpA NOLOHH_01980 0.29 -0.2 302,931 - ecpA NOLOHH_01980 0.29 -0.8 302,953 + ecpA NOLOHH_01980 0.32 +0.1 302,954 - ecpA NOLOHH_01980 0.33 -0.7 302,970 + ecpA NOLOHH_01980 0.35 -0.8 302,971 - ecpA NOLOHH_01980 0.36 +0.4 303,014 - ecpA NOLOHH_01980 0.43 -1.3 303,032 - ecpA NOLOHH_01980 0.46 +0.6 303,046 - ecpA NOLOHH_01980 0.48 +0.2 303,092 + ecpA NOLOHH_01980 0.56 +0.2 303,093 - ecpA NOLOHH_01980 0.56 +0.4 303,095 - ecpA NOLOHH_01980 0.57 -0.6 303,170 - ecpA NOLOHH_01980 0.69 -0.5 303,189 - ecpA NOLOHH_01980 0.73 -0.4 303,189 - ecpA NOLOHH_01980 0.73 -3.8 303,259 + ecpA NOLOHH_01980 0.85 +1.9 303,279 - ecpA NOLOHH_01980 0.88 +0.3 303,321 + -0.6 303,321 + +0.7 303,347 + +0.0 303,347 + +0.8 303,347 + -1.6 303,348 - +0.1 303,348 - -0.2 303,406 + +0.2 303,481 + ecpB NOLOHH_01985 0.11 +0.0 303,482 - ecpB NOLOHH_01985 0.11 +0.4 303,482 - ecpB NOLOHH_01985 0.11 -0.3 303,482 - ecpB NOLOHH_01985 0.11 +0.9 303,483 + ecpB NOLOHH_01985 0.11 -0.2 303,483 + ecpB NOLOHH_01985 0.11 -1.5 303,484 - ecpB NOLOHH_01985 0.12 -0.6 303,557 - ecpB NOLOHH_01985 0.22 +0.3 303,607 + ecpB NOLOHH_01985 0.30 +0.1 303,636 + ecpB NOLOHH_01985 0.34 -0.8 303,637 - ecpB NOLOHH_01985 0.34 +0.1 303,695 + ecpB NOLOHH_01985 0.43 +0.8 303,695 + ecpB NOLOHH_01985 0.43 +0.4 303,696 - ecpB NOLOHH_01985 0.43 +0.6 303,696 - ecpB NOLOHH_01985 0.43 +0.2 303,696 - ecpB NOLOHH_01985 0.43 +0.5 303,696 - ecpB NOLOHH_01985 0.43 +0.8 303,696 - ecpB NOLOHH_01985 0.43 -0.6 303,696 - ecpB NOLOHH_01985 0.43 +1.4 303,697 + ecpB NOLOHH_01985 0.43 +1.5 303,726 - ecpB NOLOHH_01985 0.48 +0.0 303,854 + ecpB NOLOHH_01985 0.67 -1.0 303,854 + ecpB NOLOHH_01985 0.67 -0.0 303,855 - ecpB NOLOHH_01985 0.67 +0.2 303,867 - ecpB NOLOHH_01985 0.69 +0.2 303,889 + ecpB NOLOHH_01985 0.72 -0.6 303,890 - ecpB NOLOHH_01985 0.72 +0.6 303,890 - ecpB NOLOHH_01985 0.72 -0.9 303,968 + ecpB NOLOHH_01985 0.84 +0.5 303,972 - ecpB NOLOHH_01985 0.84 +0.3 304,001 - ecpB NOLOHH_01985 0.89 -0.4 304,054 + +0.2 304,054 + +0.8 304,054 + -1.0 304,073 + +0.0 304,073 + -1.1 304,073 + -0.3 304,073 + +0.2 304,073 + +0.6 304,077 + +0.0 304,078 - -0.2 304,195 + -0.0 304,196 - -0.4 304,196 - +0.1 304,210 + +0.0 304,211 - +1.3 304,275 + -0.1 304,275 + +0.8 304,275 + -0.3 304,276 - -0.4 304,276 - +0.7 304,276 - -0.5 304,276 - -0.1 304,277 + +0.6 304,278 - +0.5 304,334 + +0.2 304,335 - -1.1
Or see this region's nucleotide sequence