Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ampG and cyoA are separated by 460 nucleotides cyoA and cyoB are separated by 21 nucleotides
NOLOHH_01290: ampG - muropeptide MFS transporter AmpG, at 150,388 to 151,863
ampG
NOLOHH_01295: cyoA - cytochrome o ubiquinol oxidase subunit II, at 152,324 to 153,271
cyoA
NOLOHH_01300: cyoB - cytochrome o ubiquinol oxidase subunit I, at 153,293 to 155,284
cyoB
Position (kb) 152
153
154 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 151.327 kb on - strand, within ampG at 151.337 kb on - strand, within ampG at 151.422 kb on + strand, within ampG at 151.422 kb on + strand, within ampG at 151.423 kb on - strand, within ampG at 151.426 kb on - strand, within ampG at 151.475 kb on + strand, within ampG at 151.476 kb on - strand, within ampG at 151.486 kb on + strand, within ampG at 151.540 kb on + strand, within ampG at 151.540 kb on + strand, within ampG at 151.541 kb on - strand, within ampG at 151.541 kb on - strand, within ampG at 151.541 kb on - strand, within ampG at 151.544 kb on + strand, within ampG at 151.545 kb on - strand, within ampG at 151.633 kb on - strand, within ampG at 151.831 kb on + strand at 151.862 kb on - strand at 151.862 kb on - strand at 151.939 kb on - strand at 151.942 kb on - strand at 152.033 kb on - strand at 152.106 kb on - strand at 152.339 kb on + strand at 152.339 kb on + strand at 152.340 kb on - strand at 152.382 kb on + strand at 152.383 kb on - strand at 152.383 kb on - strand at 152.412 kb on + strand at 152.412 kb on + strand at 152.455 kb on - strand, within cyoA at 152.542 kb on + strand, within cyoA at 152.551 kb on + strand, within cyoA at 152.551 kb on + strand, within cyoA at 152.551 kb on + strand, within cyoA at 152.552 kb on - strand, within cyoA at 152.552 kb on - strand, within cyoA at 152.555 kb on + strand, within cyoA at 152.556 kb on - strand, within cyoA at 152.581 kb on + strand, within cyoA at 152.582 kb on - strand, within cyoA at 152.611 kb on + strand, within cyoA at 152.611 kb on + strand, within cyoA at 152.611 kb on + strand, within cyoA at 152.611 kb on + strand, within cyoA at 152.612 kb on - strand, within cyoA at 152.612 kb on - strand, within cyoA at 152.612 kb on - strand, within cyoA at 152.612 kb on - strand, within cyoA at 152.612 kb on - strand, within cyoA at 152.616 kb on + strand, within cyoA at 152.616 kb on + strand, within cyoA at 152.616 kb on + strand, within cyoA at 152.617 kb on - strand, within cyoA at 152.704 kb on + strand, within cyoA at 152.873 kb on + strand, within cyoA at 152.874 kb on - strand, within cyoA at 152.930 kb on + strand, within cyoA at 152.930 kb on + strand, within cyoA at 152.930 kb on + strand, within cyoA at 152.931 kb on - strand, within cyoA at 152.931 kb on - strand, within cyoA at 152.939 kb on - strand, within cyoA at 152.939 kb on - strand, within cyoA at 152.939 kb on - strand, within cyoA at 152.939 kb on - strand, within cyoA at 152.952 kb on - strand, within cyoA at 152.989 kb on + strand, within cyoA at 152.989 kb on + strand, within cyoA at 152.989 kb on + strand, within cyoA at 152.990 kb on - strand, within cyoA at 152.990 kb on - strand, within cyoA at 153.102 kb on - strand, within cyoA at 153.167 kb on - strand, within cyoA at 153.230 kb on - strand at 153.288 kb on + strand at 153.288 kb on + strand at 153.288 kb on + strand at 153.288 kb on + strand at 153.289 kb on - strand at 153.289 kb on - strand at 153.350 kb on - strand at 153.364 kb on + strand at 153.365 kb on - strand at 153.401 kb on + strand at 153.401 kb on + strand at 153.402 kb on - strand at 153.402 kb on - strand at 153.419 kb on + strand at 153.419 kb on + strand at 153.420 kb on - strand at 153.454 kb on + strand at 153.466 kb on + strand at 153.473 kb on + strand at 153.473 kb on + strand at 153.473 kb on + strand at 153.473 kb on + strand at 153.473 kb on + strand at 153.473 kb on + strand at 153.473 kb on + strand at 153.473 kb on + strand at 153.473 kb on + strand at 153.473 kb on + strand at 153.473 kb on + strand at 153.474 kb on - strand at 153.474 kb on - strand at 153.474 kb on - strand at 153.474 kb on - strand at 153.474 kb on - strand at 153.474 kb on - strand at 153.474 kb on - strand at 153.474 kb on - strand at 153.474 kb on - strand at 153.474 kb on - strand at 153.475 kb on + strand at 153.475 kb on + strand at 153.476 kb on - strand at 153.619 kb on + strand, within cyoB at 153.620 kb on - strand, within cyoB at 153.723 kb on + strand, within cyoB at 153.723 kb on + strand, within cyoB at 153.724 kb on - strand, within cyoB at 153.724 kb on - strand, within cyoB at 153.724 kb on - strand, within cyoB at 153.809 kb on + strand, within cyoB at 153.828 kb on + strand, within cyoB at 153.829 kb on - strand, within cyoB at 153.833 kb on + strand, within cyoB at 153.833 kb on + strand, within cyoB at 153.833 kb on + strand, within cyoB at 153.833 kb on + strand, within cyoB at 153.834 kb on - strand, within cyoB at 153.888 kb on + strand, within cyoB at 153.888 kb on + strand, within cyoB at 153.888 kb on + strand, within cyoB at 153.888 kb on + strand, within cyoB at 153.888 kb on + strand, within cyoB at 153.889 kb on - strand, within cyoB at 153.892 kb on + strand, within cyoB at 153.972 kb on + strand, within cyoB at 153.972 kb on + strand, within cyoB at 154.116 kb on - strand, within cyoB at 154.116 kb on - strand, within cyoB at 154.116 kb on - strand, within cyoB at 154.154 kb on + strand, within cyoB at 154.154 kb on + strand, within cyoB at 154.155 kb on - strand, within cyoB at 154.229 kb on + strand, within cyoB at 154.232 kb on - strand, within cyoB at 154.258 kb on + strand, within cyoB at 154.258 kb on + strand, within cyoB at 154.259 kb on - strand, within cyoB
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 151,327 - ampG NOLOHH_01290 0.64 -2.1 151,337 - ampG NOLOHH_01290 0.64 -0.4 151,422 + ampG NOLOHH_01290 0.70 -0.4 151,422 + ampG NOLOHH_01290 0.70 -0.0 151,423 - ampG NOLOHH_01290 0.70 -0.1 151,426 - ampG NOLOHH_01290 0.70 -2.7 151,475 + ampG NOLOHH_01290 0.74 -0.4 151,476 - ampG NOLOHH_01290 0.74 +0.1 151,486 + ampG NOLOHH_01290 0.74 -1.0 151,540 + ampG NOLOHH_01290 0.78 -0.1 151,540 + ampG NOLOHH_01290 0.78 -3.3 151,541 - ampG NOLOHH_01290 0.78 -0.3 151,541 - ampG NOLOHH_01290 0.78 -0.6 151,541 - ampG NOLOHH_01290 0.78 -0.6 151,544 + ampG NOLOHH_01290 0.78 +0.4 151,545 - ampG NOLOHH_01290 0.78 +0.1 151,633 - ampG NOLOHH_01290 0.84 -0.7 151,831 + +0.5 151,862 - -0.2 151,862 - +1.2 151,939 - -0.2 151,942 - +0.1 152,033 - +0.7 152,106 - +0.8 152,339 + -1.4 152,339 + -0.7 152,340 - -0.9 152,382 + +0.3 152,383 - -0.0 152,383 - -0.5 152,412 + -0.8 152,412 + -1.6 152,455 - cyoA NOLOHH_01295 0.14 -2.3 152,542 + cyoA NOLOHH_01295 0.23 -0.3 152,551 + cyoA NOLOHH_01295 0.24 -0.7 152,551 + cyoA NOLOHH_01295 0.24 +0.1 152,551 + cyoA NOLOHH_01295 0.24 -2.7 152,552 - cyoA NOLOHH_01295 0.24 +0.7 152,552 - cyoA NOLOHH_01295 0.24 -1.3 152,555 + cyoA NOLOHH_01295 0.24 -0.2 152,556 - cyoA NOLOHH_01295 0.24 -2.7 152,581 + cyoA NOLOHH_01295 0.27 -0.8 152,582 - cyoA NOLOHH_01295 0.27 -0.7 152,611 + cyoA NOLOHH_01295 0.30 -1.3 152,611 + cyoA NOLOHH_01295 0.30 -0.9 152,611 + cyoA NOLOHH_01295 0.30 -0.8 152,611 + cyoA NOLOHH_01295 0.30 -0.7 152,612 - cyoA NOLOHH_01295 0.30 -1.1 152,612 - cyoA NOLOHH_01295 0.30 -2.4 152,612 - cyoA NOLOHH_01295 0.30 -1.4 152,612 - cyoA NOLOHH_01295 0.30 -0.4 152,612 - cyoA NOLOHH_01295 0.30 -0.9 152,616 + cyoA NOLOHH_01295 0.31 -0.9 152,616 + cyoA NOLOHH_01295 0.31 -2.9 152,616 + cyoA NOLOHH_01295 0.31 -0.1 152,617 - cyoA NOLOHH_01295 0.31 -0.3 152,704 + cyoA NOLOHH_01295 0.40 +0.1 152,873 + cyoA NOLOHH_01295 0.58 +0.4 152,874 - cyoA NOLOHH_01295 0.58 -0.9 152,930 + cyoA NOLOHH_01295 0.64 -2.2 152,930 + cyoA NOLOHH_01295 0.64 -0.4 152,930 + cyoA NOLOHH_01295 0.64 -1.2 152,931 - cyoA NOLOHH_01295 0.64 -1.4 152,931 - cyoA NOLOHH_01295 0.64 -1.7 152,939 - cyoA NOLOHH_01295 0.65 -0.1 152,939 - cyoA NOLOHH_01295 0.65 -3.0 152,939 - cyoA NOLOHH_01295 0.65 -2.8 152,939 - cyoA NOLOHH_01295 0.65 -2.2 152,952 - cyoA NOLOHH_01295 0.66 -0.0 152,989 + cyoA NOLOHH_01295 0.70 -1.5 152,989 + cyoA NOLOHH_01295 0.70 -1.6 152,989 + cyoA NOLOHH_01295 0.70 +0.2 152,990 - cyoA NOLOHH_01295 0.70 +0.4 152,990 - cyoA NOLOHH_01295 0.70 -0.7 153,102 - cyoA NOLOHH_01295 0.82 -2.8 153,167 - cyoA NOLOHH_01295 0.89 -1.3 153,230 - -0.6 153,288 + -1.2 153,288 + -1.5 153,288 + -0.7 153,288 + -1.0 153,289 - +0.0 153,289 - -0.3 153,350 - -0.8 153,364 + -0.7 153,365 - -1.8 153,401 + -0.7 153,401 + -0.5 153,402 - -0.9 153,402 - +0.1 153,419 + +1.8 153,419 + -1.5 153,420 - -2.0 153,454 + +1.2 153,466 + -1.0 153,473 + +0.0 153,473 + -1.6 153,473 + -1.1 153,473 + -1.0 153,473 + -0.5 153,473 + -0.6 153,473 + -0.2 153,473 + -3.2 153,473 + -0.7 153,473 + -0.2 153,473 + -0.1 153,474 - -4.3 153,474 - -1.5 153,474 - -1.9 153,474 - -0.6 153,474 - -2.0 153,474 - -1.1 153,474 - -0.7 153,474 - -0.7 153,474 - -0.3 153,474 - -0.5 153,475 + +0.0 153,475 + -1.2 153,476 - -3.0 153,619 + cyoB NOLOHH_01300 0.16 -1.6 153,620 - cyoB NOLOHH_01300 0.16 -0.7 153,723 + cyoB NOLOHH_01300 0.22 -2.0 153,723 + cyoB NOLOHH_01300 0.22 +0.5 153,724 - cyoB NOLOHH_01300 0.22 -1.6 153,724 - cyoB NOLOHH_01300 0.22 -1.2 153,724 - cyoB NOLOHH_01300 0.22 -0.7 153,809 + cyoB NOLOHH_01300 0.26 -1.1 153,828 + cyoB NOLOHH_01300 0.27 -1.4 153,829 - cyoB NOLOHH_01300 0.27 -1.9 153,833 + cyoB NOLOHH_01300 0.27 -2.0 153,833 + cyoB NOLOHH_01300 0.27 -1.1 153,833 + cyoB NOLOHH_01300 0.27 -1.0 153,833 + cyoB NOLOHH_01300 0.27 -0.5 153,834 - cyoB NOLOHH_01300 0.27 -1.0 153,888 + cyoB NOLOHH_01300 0.30 -1.5 153,888 + cyoB NOLOHH_01300 0.30 -4.3 153,888 + cyoB NOLOHH_01300 0.30 -0.9 153,888 + cyoB NOLOHH_01300 0.30 +0.2 153,888 + cyoB NOLOHH_01300 0.30 -1.1 153,889 - cyoB NOLOHH_01300 0.30 -0.5 153,892 + cyoB NOLOHH_01300 0.30 -0.5 153,972 + cyoB NOLOHH_01300 0.34 -1.2 153,972 + cyoB NOLOHH_01300 0.34 -2.5 154,116 - cyoB NOLOHH_01300 0.41 -3.2 154,116 - cyoB NOLOHH_01300 0.41 +0.4 154,116 - cyoB NOLOHH_01300 0.41 -0.3 154,154 + cyoB NOLOHH_01300 0.43 -2.6 154,154 + cyoB NOLOHH_01300 0.43 -0.5 154,155 - cyoB NOLOHH_01300 0.43 -3.7 154,229 + cyoB NOLOHH_01300 0.47 -2.0 154,232 - cyoB NOLOHH_01300 0.47 +0.9 154,258 + cyoB NOLOHH_01300 0.48 -1.7 154,258 + cyoB NOLOHH_01300 0.48 -1.3 154,259 - cyoB NOLOHH_01300 0.48 -1.0
Or see this region's nucleotide sequence