Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt repA and NOLOHH_24430 are separated by 75 nucleotides NOLOHH_24430 and xerD are separated by 89 nucleotides
NOLOHH_24425: repA - RepFIB replication protein A, at 32,016 to 32,993
repA
NOLOHH_24430: NOLOHH_24430 - hypothetical protein, at 33,069 to 33,188
_24430
NOLOHH_24435: xerD - recombinase, at 33,278 to 34,018
xerD
Position (kb) 32
33 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 31.451 kb on + strand at 31.562 kb on + strand at 31.562 kb on + strand at 31.563 kb on - strand at 31.563 kb on - strand at 31.568 kb on + strand at 31.573 kb on - strand at 31.641 kb on + strand at 31.641 kb on + strand at 31.847 kb on + strand at 31.879 kb on + strand at 31.879 kb on + strand at 31.879 kb on + strand at 31.883 kb on + strand at 31.912 kb on + strand at 31.950 kb on + strand at 32.469 kb on + strand, within repA at 32.516 kb on + strand, within repA at 32.527 kb on + strand, within repA at 32.997 kb on + strand at 32.997 kb on + strand at 33.034 kb on - strand at 33.040 kb on + strand at 33.041 kb on - strand at 33.041 kb on - strand at 33.043 kb on - strand at 33.081 kb on - strand, within NOLOHH_24430 at 33.083 kb on - strand, within NOLOHH_24430 at 33.083 kb on - strand, within NOLOHH_24430 at 33.135 kb on + strand, within NOLOHH_24430 at 33.135 kb on + strand, within NOLOHH_24430 at 33.136 kb on - strand, within NOLOHH_24430 at 33.139 kb on + strand, within NOLOHH_24430 at 33.139 kb on + strand, within NOLOHH_24430 at 33.139 kb on + strand, within NOLOHH_24430 at 33.140 kb on - strand, within NOLOHH_24430 at 33.140 kb on - strand, within NOLOHH_24430 at 33.182 kb on - strand at 33.207 kb on + strand at 33.211 kb on + strand at 33.226 kb on - strand at 33.226 kb on - strand at 33.230 kb on + strand at 33.231 kb on - strand at 33.255 kb on + strand at 33.255 kb on + strand at 33.255 kb on + strand at 33.256 kb on - strand at 33.256 kb on - strand at 33.256 kb on - strand at 33.258 kb on - strand at 33.258 kb on - strand at 33.259 kb on + strand at 33.259 kb on + strand at 33.259 kb on + strand at 33.260 kb on - strand at 33.362 kb on - strand, within xerD at 33.382 kb on + strand, within xerD at 33.383 kb on - strand, within xerD at 33.384 kb on + strand, within xerD at 33.385 kb on - strand, within xerD at 33.470 kb on - strand, within xerD at 33.471 kb on + strand, within xerD at 33.471 kb on + strand, within xerD at 33.471 kb on + strand, within xerD at 33.471 kb on + strand, within xerD at 33.471 kb on + strand, within xerD at 33.471 kb on + strand, within xerD at 33.471 kb on + strand, within xerD at 33.472 kb on - strand, within xerD at 33.472 kb on - strand, within xerD at 33.472 kb on - strand, within xerD at 33.472 kb on - strand, within xerD at 33.472 kb on - strand, within xerD at 33.472 kb on - strand, within xerD at 33.472 kb on - strand, within xerD at 33.645 kb on + strand, within xerD at 33.646 kb on - strand, within xerD at 33.646 kb on - strand, within xerD at 33.650 kb on + strand, within xerD at 33.650 kb on + strand, within xerD at 33.650 kb on + strand, within xerD at 33.650 kb on + strand, within xerD at 33.650 kb on + strand, within xerD at 33.651 kb on - strand, within xerD at 33.651 kb on - strand, within xerD at 33.651 kb on - strand, within xerD at 33.651 kb on - strand, within xerD at 33.651 kb on - strand, within xerD at 33.653 kb on - strand, within xerD at 33.653 kb on - strand, within xerD at 33.744 kb on - strand, within xerD at 33.793 kb on + strand, within xerD at 33.829 kb on + strand, within xerD at 33.851 kb on - strand, within xerD at 33.852 kb on + strand, within xerD at 33.853 kb on - strand, within xerD at 33.853 kb on - strand, within xerD at 33.888 kb on + strand, within xerD at 33.888 kb on + strand, within xerD at 33.888 kb on + strand, within xerD
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 31,451 + -2.5 31,562 + -0.4 31,562 + -1.5 31,563 - -0.6 31,563 - -0.5 31,568 + -1.1 31,573 - +0.2 31,641 + +0.4 31,641 + -0.5 31,847 + +0.0 31,879 + -0.9 31,879 + +0.2 31,879 + +1.3 31,883 + +0.6 31,912 + +0.5 31,950 + -0.3 32,469 + repA NOLOHH_24425 0.46 -0.8 32,516 + repA NOLOHH_24425 0.51 -1.1 32,527 + repA NOLOHH_24425 0.52 -0.0 32,997 + -0.6 32,997 + +0.3 33,034 - +0.0 33,040 + -0.7 33,041 - -0.2 33,041 - -0.3 33,043 - -0.1 33,081 - NOLOHH_24430 0.10 -0.2 33,083 - NOLOHH_24430 0.12 -1.1 33,083 - NOLOHH_24430 0.12 -3.4 33,135 + NOLOHH_24430 0.55 +0.8 33,135 + NOLOHH_24430 0.55 -1.0 33,136 - NOLOHH_24430 0.56 +0.4 33,139 + NOLOHH_24430 0.58 -1.6 33,139 + NOLOHH_24430 0.58 -0.8 33,139 + NOLOHH_24430 0.58 +0.3 33,140 - NOLOHH_24430 0.59 -1.4 33,140 - NOLOHH_24430 0.59 -0.3 33,182 - +0.6 33,207 + -1.2 33,211 + +0.3 33,226 - -0.1 33,226 - +0.3 33,230 + +0.7 33,231 - +0.2 33,255 + -0.0 33,255 + -1.7 33,255 + +0.4 33,256 - -0.3 33,256 - +1.2 33,256 - -0.3 33,258 - +0.4 33,258 - +1.6 33,259 + +2.2 33,259 + +0.6 33,259 + +0.4 33,260 - -0.1 33,362 - xerD NOLOHH_24435 0.11 +1.0 33,382 + xerD NOLOHH_24435 0.14 +0.1 33,383 - xerD NOLOHH_24435 0.14 -0.9 33,384 + xerD NOLOHH_24435 0.14 +1.6 33,385 - xerD NOLOHH_24435 0.14 +0.5 33,470 - xerD NOLOHH_24435 0.26 -0.1 33,471 + xerD NOLOHH_24435 0.26 -3.4 33,471 + xerD NOLOHH_24435 0.26 -0.3 33,471 + xerD NOLOHH_24435 0.26 +0.4 33,471 + xerD NOLOHH_24435 0.26 -0.1 33,471 + xerD NOLOHH_24435 0.26 +1.8 33,471 + xerD NOLOHH_24435 0.26 +0.6 33,471 + xerD NOLOHH_24435 0.26 +0.9 33,472 - xerD NOLOHH_24435 0.26 -1.9 33,472 - xerD NOLOHH_24435 0.26 +0.1 33,472 - xerD NOLOHH_24435 0.26 +1.3 33,472 - xerD NOLOHH_24435 0.26 -0.7 33,472 - xerD NOLOHH_24435 0.26 +1.0 33,472 - xerD NOLOHH_24435 0.26 -1.9 33,472 - xerD NOLOHH_24435 0.26 -0.6 33,645 + xerD NOLOHH_24435 0.50 +0.3 33,646 - xerD NOLOHH_24435 0.50 +0.5 33,646 - xerD NOLOHH_24435 0.50 +1.1 33,650 + xerD NOLOHH_24435 0.50 +0.3 33,650 + xerD NOLOHH_24435 0.50 +1.1 33,650 + xerD NOLOHH_24435 0.50 +0.9 33,650 + xerD NOLOHH_24435 0.50 +0.4 33,650 + xerD NOLOHH_24435 0.50 -1.7 33,651 - xerD NOLOHH_24435 0.50 +0.5 33,651 - xerD NOLOHH_24435 0.50 -0.9 33,651 - xerD NOLOHH_24435 0.50 +0.9 33,651 - xerD NOLOHH_24435 0.50 -0.4 33,651 - xerD NOLOHH_24435 0.50 -0.6 33,653 - xerD NOLOHH_24435 0.51 -1.1 33,653 - xerD NOLOHH_24435 0.51 +1.9 33,744 - xerD NOLOHH_24435 0.63 -1.5 33,793 + xerD NOLOHH_24435 0.70 +0.8 33,829 + xerD NOLOHH_24435 0.74 -0.9 33,851 - xerD NOLOHH_24435 0.77 -1.0 33,852 + xerD NOLOHH_24435 0.77 -1.9 33,853 - xerD NOLOHH_24435 0.78 +1.3 33,853 - xerD NOLOHH_24435 0.78 -1.1 33,888 + xerD NOLOHH_24435 0.82 -2.3 33,888 + xerD NOLOHH_24435 0.82 +0.3 33,888 + xerD NOLOHH_24435 0.82 +0.3
Or see this region's nucleotide sequence