Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17630

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbtuC and btuE are separated by 62 nucleotidesbtuE and btuD overlap by 1 nucleotidesbtuD and nlpC are separated by 77 nucleotidesnlpC and ydiV are separated by 246 nucleotides NOLOHH_17620: btuC - vitamin B12 ABC transporter permease BtuC, at 3,458,065 to 3,459,045 btuC NOLOHH_17625: btuE - bifunctional thioredoxin/glutathione peroxidase, at 3,459,108 to 3,459,659 btuE NOLOHH_17630: btuD - vitamin B12 ABC transporter ATP-binding protein BtuD, at 3,459,659 to 3,460,408 btuD NOLOHH_17635: nlpC - putative endopeptidase NlpC, at 3,460,486 to 3,460,950 nlpC NOLOHH_17640: ydiV - anti-FlhDC factor, at 3,461,197 to 3,461,910 ydiV Position (kb) 3459 3460 3461Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3458.700 kb on + strand, within btuCat 3458.850 kb on + strand, within btuCat 3458.888 kb on + strand, within btuCat 3459.062 kb on + strandat 3459.405 kb on - strand, within btuEat 3459.533 kb on + strand, within btuEat 3459.657 kb on + strandat 3459.678 kb on + strandat 3459.678 kb on + strandat 3459.935 kb on + strand, within btuDat 3459.959 kb on - strand, within btuDat 3460.275 kb on + strand, within btuDat 3460.912 kb on + strandat 3460.993 kb on - strandat 3461.003 kb on - strandat 3461.155 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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3,458,700 + btuC NOLOHH_17620 0.65 -0.8
3,458,850 + btuC NOLOHH_17620 0.80 +2.1
3,458,888 + btuC NOLOHH_17620 0.84 +1.1
3,459,062 + -0.5
3,459,405 - btuE NOLOHH_17625 0.54 -3.5
3,459,533 + btuE NOLOHH_17625 0.77 -1.3
3,459,657 + +2.7
3,459,678 + -1.0
3,459,678 + +1.7
3,459,935 + btuD NOLOHH_17630 0.37 -2.1
3,459,959 - btuD NOLOHH_17630 0.40 -1.3
3,460,275 + btuD NOLOHH_17630 0.82 +0.2
3,460,912 + +1.0
3,460,993 - -1.4
3,461,003 - -1.0
3,461,155 + +2.7

Or see this region's nucleotide sequence