Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt araF and araG are separated by 69 nucleotides araG and araH are separated by 14 nucleotides
NOLOHH_16510: araF - arabinose ABC transporter substrate-binding protein AraF, at 3,245,168 to 3,246,157
araF
NOLOHH_16515: araG - arabinose ABC transporter ATP-binding protein AraG, at 3,246,227 to 3,247,741
araG
NOLOHH_16520: araH - arabinose ABC transporter permease AraH, at 3,247,756 to 3,248,742
araH
Position (kb) 3246
3247
3248 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3245.344 kb on + strand, within araF at 3245.344 kb on + strand, within araF at 3245.344 kb on + strand, within araF at 3245.527 kb on + strand, within araF at 3245.601 kb on - strand, within araF at 3245.752 kb on - strand, within araF at 3245.845 kb on + strand, within araF at 3245.981 kb on + strand, within araF at 3246.009 kb on + strand, within araF at 3246.009 kb on + strand, within araF at 3246.038 kb on + strand, within araF at 3246.144 kb on + strand at 3246.155 kb on + strand at 3246.305 kb on - strand at 3246.305 kb on - strand at 3246.305 kb on - strand at 3246.318 kb on - strand at 3246.395 kb on + strand, within araG at 3246.395 kb on + strand, within araG at 3246.395 kb on + strand, within araG at 3246.498 kb on + strand, within araG at 3246.499 kb on - strand, within araG at 3246.536 kb on + strand, within araG at 3246.537 kb on - strand, within araG at 3246.653 kb on + strand, within araG at 3246.816 kb on + strand, within araG at 3246.816 kb on + strand, within araG at 3246.817 kb on - strand, within araG at 3246.819 kb on - strand, within araG at 3246.819 kb on - strand, within araG at 3246.887 kb on + strand, within araG at 3246.971 kb on + strand, within araG at 3246.971 kb on + strand, within araG at 3246.988 kb on + strand, within araG at 3246.988 kb on + strand, within araG at 3246.992 kb on + strand, within araG at 3247.050 kb on + strand, within araG at 3247.166 kb on + strand, within araG at 3247.166 kb on + strand, within araG at 3247.167 kb on - strand, within araG at 3247.167 kb on - strand, within araG at 3247.190 kb on - strand, within araG at 3247.309 kb on + strand, within araG at 3247.504 kb on + strand, within araG at 3247.553 kb on + strand, within araG at 3247.602 kb on + strand at 3247.743 kb on + strand at 3247.752 kb on + strand at 3247.752 kb on + strand at 3247.791 kb on + strand at 3247.902 kb on + strand, within araH at 3248.006 kb on + strand, within araH at 3248.195 kb on - strand, within araH at 3248.331 kb on + strand, within araH at 3248.331 kb on + strand, within araH at 3248.424 kb on + strand, within araH at 3248.481 kb on + strand, within araH at 3248.482 kb on - strand, within araH at 3248.488 kb on - strand, within araH at 3248.523 kb on + strand, within araH at 3248.587 kb on + strand, within araH at 3248.646 kb on + strand at 3248.681 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 3,245,344 + araF NOLOHH_16510 0.18 -1.8 3,245,344 + araF NOLOHH_16510 0.18 -0.1 3,245,344 + araF NOLOHH_16510 0.18 +0.2 3,245,527 + araF NOLOHH_16510 0.36 +0.9 3,245,601 - araF NOLOHH_16510 0.44 +0.9 3,245,752 - araF NOLOHH_16510 0.59 +3.6 3,245,845 + araF NOLOHH_16510 0.68 -0.3 3,245,981 + araF NOLOHH_16510 0.82 +0.7 3,246,009 + araF NOLOHH_16510 0.85 +1.8 3,246,009 + araF NOLOHH_16510 0.85 -1.3 3,246,038 + araF NOLOHH_16510 0.88 -1.2 3,246,144 + -0.1 3,246,155 + +0.4 3,246,305 - +1.2 3,246,305 - +0.2 3,246,305 - +0.1 3,246,318 - +0.3 3,246,395 + araG NOLOHH_16515 0.11 +0.1 3,246,395 + araG NOLOHH_16515 0.11 -1.7 3,246,395 + araG NOLOHH_16515 0.11 -0.3 3,246,498 + araG NOLOHH_16515 0.18 -2.6 3,246,499 - araG NOLOHH_16515 0.18 +0.0 3,246,536 + araG NOLOHH_16515 0.20 -2.0 3,246,537 - araG NOLOHH_16515 0.20 +2.1 3,246,653 + araG NOLOHH_16515 0.28 -2.3 3,246,816 + araG NOLOHH_16515 0.39 +1.2 3,246,816 + araG NOLOHH_16515 0.39 -1.9 3,246,817 - araG NOLOHH_16515 0.39 -1.1 3,246,819 - araG NOLOHH_16515 0.39 +1.7 3,246,819 - araG NOLOHH_16515 0.39 -1.5 3,246,887 + araG NOLOHH_16515 0.44 -0.3 3,246,971 + araG NOLOHH_16515 0.49 +0.7 3,246,971 + araG NOLOHH_16515 0.49 -3.6 3,246,988 + araG NOLOHH_16515 0.50 +1.4 3,246,988 + araG NOLOHH_16515 0.50 -0.3 3,246,992 + araG NOLOHH_16515 0.50 +0.7 3,247,050 + araG NOLOHH_16515 0.54 +0.2 3,247,166 + araG NOLOHH_16515 0.62 -0.3 3,247,166 + araG NOLOHH_16515 0.62 +1.0 3,247,167 - araG NOLOHH_16515 0.62 +2.2 3,247,167 - araG NOLOHH_16515 0.62 -1.5 3,247,190 - araG NOLOHH_16515 0.64 +2.1 3,247,309 + araG NOLOHH_16515 0.71 -1.1 3,247,504 + araG NOLOHH_16515 0.84 -0.9 3,247,553 + araG NOLOHH_16515 0.88 -1.7 3,247,602 + -0.2 3,247,743 + +0.3 3,247,752 + -2.0 3,247,752 + -1.8 3,247,791 + -0.3 3,247,902 + araH NOLOHH_16520 0.15 +0.7 3,248,006 + araH NOLOHH_16520 0.25 +2.3 3,248,195 - araH NOLOHH_16520 0.44 +2.1 3,248,331 + araH NOLOHH_16520 0.58 -0.8 3,248,331 + araH NOLOHH_16520 0.58 +0.2 3,248,424 + araH NOLOHH_16520 0.68 +2.0 3,248,481 + araH NOLOHH_16520 0.73 -1.1 3,248,482 - araH NOLOHH_16520 0.74 +0.6 3,248,488 - araH NOLOHH_16520 0.74 +1.9 3,248,523 + araH NOLOHH_16520 0.78 -0.8 3,248,587 + araH NOLOHH_16520 0.84 -1.7 3,248,646 + +0.4 3,248,681 + -1.7
Or see this region's nucleotide sequence