Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ftnB and araF are separated by 796 nucleotides araF and araG are separated by 69 nucleotides
NOLOHH_16505: ftnB - non-heme ferritin-like protein, at 3,243,868 to 3,244,371
ftnB
NOLOHH_16510: araF - arabinose ABC transporter substrate-binding protein AraF, at 3,245,168 to 3,246,157
araF
NOLOHH_16515: araG - arabinose ABC transporter ATP-binding protein AraG, at 3,246,227 to 3,247,741
araG
Position (kb) 3245
3246
3247 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3244.225 kb on - strand, within ftnB at 3244.540 kb on - strand at 3244.587 kb on + strand at 3245.069 kb on + strand at 3245.111 kb on + strand at 3245.151 kb on + strand at 3245.215 kb on + strand at 3245.344 kb on + strand, within araF at 3245.344 kb on + strand, within araF at 3245.344 kb on + strand, within araF at 3245.527 kb on + strand, within araF at 3245.601 kb on - strand, within araF at 3245.752 kb on - strand, within araF at 3245.845 kb on + strand, within araF at 3245.981 kb on + strand, within araF at 3246.009 kb on + strand, within araF at 3246.009 kb on + strand, within araF at 3246.038 kb on + strand, within araF at 3246.144 kb on + strand at 3246.155 kb on + strand at 3246.305 kb on - strand at 3246.305 kb on - strand at 3246.305 kb on - strand at 3246.318 kb on - strand at 3246.395 kb on + strand, within araG at 3246.395 kb on + strand, within araG at 3246.395 kb on + strand, within araG at 3246.498 kb on + strand, within araG at 3246.499 kb on - strand, within araG at 3246.536 kb on + strand, within araG at 3246.537 kb on - strand, within araG at 3246.653 kb on + strand, within araG at 3246.816 kb on + strand, within araG at 3246.816 kb on + strand, within araG at 3246.817 kb on - strand, within araG at 3246.819 kb on - strand, within araG at 3246.819 kb on - strand, within araG at 3246.887 kb on + strand, within araG at 3246.971 kb on + strand, within araG at 3246.971 kb on + strand, within araG at 3246.988 kb on + strand, within araG at 3246.988 kb on + strand, within araG at 3246.992 kb on + strand, within araG at 3247.050 kb on + strand, within araG
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 3,244,225 - ftnB NOLOHH_16505 0.71 +1.3 3,244,540 - +1.2 3,244,587 + +0.5 3,245,069 + -0.7 3,245,111 + +1.7 3,245,151 + -0.9 3,245,215 + +0.3 3,245,344 + araF NOLOHH_16510 0.18 -1.8 3,245,344 + araF NOLOHH_16510 0.18 -0.1 3,245,344 + araF NOLOHH_16510 0.18 +0.2 3,245,527 + araF NOLOHH_16510 0.36 +0.9 3,245,601 - araF NOLOHH_16510 0.44 +0.9 3,245,752 - araF NOLOHH_16510 0.59 +3.6 3,245,845 + araF NOLOHH_16510 0.68 -0.3 3,245,981 + araF NOLOHH_16510 0.82 +0.7 3,246,009 + araF NOLOHH_16510 0.85 +1.8 3,246,009 + araF NOLOHH_16510 0.85 -1.3 3,246,038 + araF NOLOHH_16510 0.88 -1.2 3,246,144 + -0.1 3,246,155 + +0.4 3,246,305 - +1.2 3,246,305 - +0.2 3,246,305 - +0.1 3,246,318 - +0.3 3,246,395 + araG NOLOHH_16515 0.11 +0.1 3,246,395 + araG NOLOHH_16515 0.11 -1.7 3,246,395 + araG NOLOHH_16515 0.11 -0.3 3,246,498 + araG NOLOHH_16515 0.18 -2.6 3,246,499 - araG NOLOHH_16515 0.18 +0.0 3,246,536 + araG NOLOHH_16515 0.20 -2.0 3,246,537 - araG NOLOHH_16515 0.20 +2.1 3,246,653 + araG NOLOHH_16515 0.28 -2.3 3,246,816 + araG NOLOHH_16515 0.39 +1.2 3,246,816 + araG NOLOHH_16515 0.39 -1.9 3,246,817 - araG NOLOHH_16515 0.39 -1.1 3,246,819 - araG NOLOHH_16515 0.39 +1.7 3,246,819 - araG NOLOHH_16515 0.39 -1.5 3,246,887 + araG NOLOHH_16515 0.44 -0.3 3,246,971 + araG NOLOHH_16515 0.49 +0.7 3,246,971 + araG NOLOHH_16515 0.49 -3.6 3,246,988 + araG NOLOHH_16515 0.50 +1.4 3,246,988 + araG NOLOHH_16515 0.50 -0.3 3,246,992 + araG NOLOHH_16515 0.50 +0.7 3,247,050 + araG NOLOHH_16515 0.54 +0.2
Or see this region's nucleotide sequence