Strain Fitness in Escherichia coli ECOR27 around NOLOHH_15365

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_15355 and NOLOHH_15360 are separated by 119 nucleotidesNOLOHH_15360 and NOLOHH_15365 are separated by 24 nucleotidesNOLOHH_15365 and NOLOHH_15370 are separated by 447 nucleotides NOLOHH_15355: NOLOHH_15355 - Site-specific recombinase, phage integrase family, at 3,019,752 to 3,021,110 _15355 NOLOHH_15360: NOLOHH_15360 - hypothetical protein, at 3,021,230 to 3,021,499 _15360 NOLOHH_15365: NOLOHH_15365 - hypothetical protein, at 3,021,524 to 3,022,465 _15365 NOLOHH_15370: NOLOHH_15370 - hypothetical protein, at 3,022,913 to 3,023,668 _15370 Position (kb) 3021 3022 3023Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3020.529 kb on + strand, within NOLOHH_15355at 3020.694 kb on + strand, within NOLOHH_15355at 3020.694 kb on + strand, within NOLOHH_15355at 3020.694 kb on + strand, within NOLOHH_15355at 3020.749 kb on + strand, within NOLOHH_15355at 3021.053 kb on + strandat 3021.053 kb on + strandat 3021.053 kb on + strandat 3021.054 kb on - strandat 3021.054 kb on - strandat 3021.193 kb on + strandat 3021.223 kb on + strandat 3021.300 kb on + strand, within NOLOHH_15360at 3021.300 kb on + strand, within NOLOHH_15360at 3021.300 kb on + strand, within NOLOHH_15360at 3021.300 kb on + strand, within NOLOHH_15360at 3021.300 kb on + strand, within NOLOHH_15360at 3021.304 kb on + strand, within NOLOHH_15360at 3021.310 kb on + strand, within NOLOHH_15360at 3021.310 kb on + strand, within NOLOHH_15360at 3021.310 kb on + strand, within NOLOHH_15360at 3021.310 kb on + strand, within NOLOHH_15360at 3021.310 kb on + strand, within NOLOHH_15360at 3021.310 kb on + strand, within NOLOHH_15360at 3021.310 kb on + strand, within NOLOHH_15360at 3021.424 kb on + strand, within NOLOHH_15360at 3021.424 kb on + strand, within NOLOHH_15360at 3021.424 kb on + strand, within NOLOHH_15360at 3021.424 kb on + strand, within NOLOHH_15360at 3021.424 kb on + strand, within NOLOHH_15360at 3021.490 kb on + strandat 3021.591 kb on + strandat 3021.647 kb on + strand, within NOLOHH_15365at 3021.668 kb on + strand, within NOLOHH_15365at 3021.709 kb on + strand, within NOLOHH_15365at 3021.767 kb on + strand, within NOLOHH_15365at 3021.768 kb on - strand, within NOLOHH_15365at 3021.792 kb on + strand, within NOLOHH_15365at 3021.792 kb on + strand, within NOLOHH_15365at 3021.792 kb on + strand, within NOLOHH_15365at 3021.853 kb on + strand, within NOLOHH_15365at 3022.008 kb on + strand, within NOLOHH_15365at 3022.015 kb on + strand, within NOLOHH_15365at 3022.015 kb on + strand, within NOLOHH_15365at 3022.098 kb on + strand, within NOLOHH_15365at 3022.098 kb on + strand, within NOLOHH_15365at 3022.098 kb on + strand, within NOLOHH_15365at 3022.098 kb on + strand, within NOLOHH_15365at 3022.099 kb on - strand, within NOLOHH_15365at 3022.099 kb on - strand, within NOLOHH_15365at 3022.100 kb on + strand, within NOLOHH_15365at 3022.101 kb on - strand, within NOLOHH_15365at 3022.192 kb on + strand, within NOLOHH_15365at 3022.521 kb on - strandat 3022.523 kb on - strandat 3022.547 kb on - strandat 3022.670 kb on - strandat 3022.784 kb on - strandat 3022.790 kb on - strandat 3022.790 kb on - strandat 3022.804 kb on - strandat 3022.808 kb on - strandat 3022.808 kb on - strandat 3022.808 kb on - strandat 3022.989 kb on + strand, within NOLOHH_15370at 3023.047 kb on + strand, within NOLOHH_15370at 3023.047 kb on + strand, within NOLOHH_15370at 3023.048 kb on - strand, within NOLOHH_15370at 3023.066 kb on + strand, within NOLOHH_15370at 3023.138 kb on + strand, within NOLOHH_15370at 3023.138 kb on + strand, within NOLOHH_15370at 3023.274 kb on + strand, within NOLOHH_15370at 3023.353 kb on + strand, within NOLOHH_15370at 3023.398 kb on + strand, within NOLOHH_15370

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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3,020,529 + NOLOHH_15355 0.57 +0.4
3,020,694 + NOLOHH_15355 0.69 +0.6
3,020,694 + NOLOHH_15355 0.69 -0.6
3,020,694 + NOLOHH_15355 0.69 -2.2
3,020,749 + NOLOHH_15355 0.73 -1.5
3,021,053 + -0.3
3,021,053 + -0.8
3,021,053 + -0.0
3,021,054 - +2.1
3,021,054 - -1.9
3,021,193 + +0.3
3,021,223 + -0.4
3,021,300 + NOLOHH_15360 0.26 -1.0
3,021,300 + NOLOHH_15360 0.26 -1.4
3,021,300 + NOLOHH_15360 0.26 -0.5
3,021,300 + NOLOHH_15360 0.26 -1.6
3,021,300 + NOLOHH_15360 0.26 +0.1
3,021,304 + NOLOHH_15360 0.27 -0.7
3,021,310 + NOLOHH_15360 0.30 -1.8
3,021,310 + NOLOHH_15360 0.30 +0.7
3,021,310 + NOLOHH_15360 0.30 -0.0
3,021,310 + NOLOHH_15360 0.30 +1.1
3,021,310 + NOLOHH_15360 0.30 -0.5
3,021,310 + NOLOHH_15360 0.30 -0.0
3,021,310 + NOLOHH_15360 0.30 +0.8
3,021,424 + NOLOHH_15360 0.72 +1.8
3,021,424 + NOLOHH_15360 0.72 +0.8
3,021,424 + NOLOHH_15360 0.72 -0.2
3,021,424 + NOLOHH_15360 0.72 +1.6
3,021,424 + NOLOHH_15360 0.72 +2.6
3,021,490 + +0.9
3,021,591 + -0.7
3,021,647 + NOLOHH_15365 0.13 +1.0
3,021,668 + NOLOHH_15365 0.15 -0.8
3,021,709 + NOLOHH_15365 0.20 +1.9
3,021,767 + NOLOHH_15365 0.26 -2.9
3,021,768 - NOLOHH_15365 0.26 -0.4
3,021,792 + NOLOHH_15365 0.28 +0.2
3,021,792 + NOLOHH_15365 0.28 -1.2
3,021,792 + NOLOHH_15365 0.28 -1.8
3,021,853 + NOLOHH_15365 0.35 -2.9
3,022,008 + NOLOHH_15365 0.51 -2.6
3,022,015 + NOLOHH_15365 0.52 +0.8
3,022,015 + NOLOHH_15365 0.52 +1.1
3,022,098 + NOLOHH_15365 0.61 -0.7
3,022,098 + NOLOHH_15365 0.61 +0.5
3,022,098 + NOLOHH_15365 0.61 +0.2
3,022,098 + NOLOHH_15365 0.61 -0.2
3,022,099 - NOLOHH_15365 0.61 -0.1
3,022,099 - NOLOHH_15365 0.61 -0.6
3,022,100 + NOLOHH_15365 0.61 +0.1
3,022,101 - NOLOHH_15365 0.61 -1.0
3,022,192 + NOLOHH_15365 0.71 +1.4
3,022,521 - -2.0
3,022,523 - +1.2
3,022,547 - +1.7
3,022,670 - -0.0
3,022,784 - -2.4
3,022,790 - -1.8
3,022,790 - -0.3
3,022,804 - +0.3
3,022,808 - -0.7
3,022,808 - +1.6
3,022,808 - +1.0
3,022,989 + NOLOHH_15370 0.10 +1.5
3,023,047 + NOLOHH_15370 0.18 +0.8
3,023,047 + NOLOHH_15370 0.18 -0.1
3,023,048 - NOLOHH_15370 0.18 +0.1
3,023,066 + NOLOHH_15370 0.20 +1.4
3,023,138 + NOLOHH_15370 0.30 -1.3
3,023,138 + NOLOHH_15370 0.30 +2.5
3,023,274 + NOLOHH_15370 0.48 -1.0
3,023,353 + NOLOHH_15370 0.58 -0.3
3,023,398 + NOLOHH_15370 0.64 -0.3

Or see this region's nucleotide sequence