Strain Fitness in Escherichia coli ECOR27 around NOLOHH_13770

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nteutL and eutK are separated by 12 nucleotideseutK and eutR are separated by 45 nucleotideseutR and hemF are separated by 5 nucleotideshemF and amiA are separated by 3 nucleotides NOLOHH_13760: eutL - ethanolamine utilization microcompartment protein EutL, at 2,675,447 to 2,676,106 eutL NOLOHH_13765: eutK - ethanolamine utilization microcompartment protein EutK, at 2,676,119 to 2,676,619 eutK NOLOHH_13770: eutR - HTH-type transcriptional regulator EutR, at 2,676,665 to 2,677,717 eutR NOLOHH_13775: hemF - oxygen-dependent coproporphyrinogen oxidase, at 2,677,723 to 2,678,622 hemF NOLOHH_13780: amiA - N-acetylmuramoyl-L-alanine amidase AmiA, at 2,678,626 to 2,679,495 amiA Position (kb) 2676 2677 2678Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2675.705 kb on - strand, within eutLat 2675.764 kb on + strand, within eutLat 2675.764 kb on + strand, within eutLat 2675.765 kb on - strand, within eutLat 2675.850 kb on - strand, within eutLat 2675.850 kb on - strand, within eutLat 2675.894 kb on + strand, within eutLat 2675.895 kb on - strand, within eutLat 2675.895 kb on - strand, within eutLat 2675.924 kb on + strand, within eutLat 2675.924 kb on + strand, within eutLat 2675.925 kb on - strand, within eutLat 2675.958 kb on + strand, within eutLat 2675.999 kb on + strand, within eutLat 2676.037 kb on + strand, within eutLat 2676.037 kb on + strand, within eutLat 2676.037 kb on + strand, within eutLat 2676.434 kb on - strand, within eutKat 2676.480 kb on + strand, within eutKat 2676.481 kb on - strand, within eutKat 2676.548 kb on - strand, within eutKat 2676.583 kb on + strandat 2676.643 kb on + strandat 2676.701 kb on + strandat 2676.702 kb on - strandat 2676.786 kb on - strand, within eutRat 2676.786 kb on - strand, within eutRat 2676.786 kb on - strand, within eutRat 2676.873 kb on + strand, within eutRat 2676.902 kb on + strand, within eutRat 2676.902 kb on + strand, within eutRat 2676.902 kb on + strand, within eutRat 2677.073 kb on + strand, within eutRat 2677.150 kb on - strand, within eutRat 2677.152 kb on + strand, within eutRat 2677.152 kb on + strand, within eutRat 2677.152 kb on + strand, within eutRat 2677.152 kb on + strand, within eutRat 2677.152 kb on + strand, within eutRat 2677.152 kb on + strand, within eutRat 2677.152 kb on + strand, within eutRat 2677.152 kb on + strand, within eutRat 2677.152 kb on + strand, within eutRat 2677.152 kb on + strand, within eutRat 2677.152 kb on + strand, within eutRat 2677.152 kb on + strand, within eutRat 2677.152 kb on + strand, within eutRat 2677.153 kb on - strand, within eutRat 2677.153 kb on - strand, within eutRat 2677.153 kb on - strand, within eutRat 2677.153 kb on - strand, within eutRat 2677.156 kb on + strand, within eutRat 2677.156 kb on + strand, within eutRat 2677.156 kb on + strand, within eutRat 2677.156 kb on + strand, within eutRat 2677.156 kb on + strand, within eutRat 2677.156 kb on + strand, within eutRat 2677.156 kb on + strand, within eutRat 2677.156 kb on + strand, within eutRat 2677.157 kb on - strand, within eutRat 2677.157 kb on - strand, within eutRat 2677.157 kb on - strand, within eutRat 2677.198 kb on + strand, within eutRat 2677.377 kb on - strand, within eutRat 2677.381 kb on + strand, within eutRat 2677.386 kb on + strand, within eutRat 2677.406 kb on + strand, within eutRat 2677.406 kb on + strand, within eutRat 2677.406 kb on + strand, within eutRat 2677.407 kb on - strand, within eutRat 2677.407 kb on - strand, within eutRat 2677.453 kb on + strand, within eutRat 2677.482 kb on + strand, within eutRat 2677.596 kb on + strand, within eutRat 2677.724 kb on + strandat 2677.724 kb on + strandat 2677.725 kb on - strandat 2677.743 kb on + strandat 2677.746 kb on + strandat 2677.746 kb on + strandat 2677.747 kb on - strandat 2677.756 kb on + strandat 2677.757 kb on - strandat 2677.797 kb on - strandat 2677.797 kb on - strandat 2677.919 kb on + strand, within hemFat 2677.963 kb on - strand, within hemFat 2677.972 kb on + strand, within hemFat 2677.982 kb on - strand, within hemFat 2677.986 kb on - strand, within hemFat 2678.108 kb on + strand, within hemFat 2678.109 kb on - strand, within hemFat 2678.109 kb on - strand, within hemFat 2678.114 kb on + strand, within hemFat 2678.220 kb on - strand, within hemFat 2678.321 kb on + strand, within hemFat 2678.322 kb on - strand, within hemFat 2678.341 kb on + strand, within hemFat 2678.598 kb on + strandat 2678.622 kb on + strandat 2678.622 kb on + strandat 2678.672 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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2,675,705 - eutL NOLOHH_13760 0.39 -0.9
2,675,764 + eutL NOLOHH_13760 0.48 +0.6
2,675,764 + eutL NOLOHH_13760 0.48 +1.6
2,675,765 - eutL NOLOHH_13760 0.48 +0.1
2,675,850 - eutL NOLOHH_13760 0.61 +0.4
2,675,850 - eutL NOLOHH_13760 0.61 -1.7
2,675,894 + eutL NOLOHH_13760 0.68 -0.0
2,675,895 - eutL NOLOHH_13760 0.68 -1.0
2,675,895 - eutL NOLOHH_13760 0.68 +1.1
2,675,924 + eutL NOLOHH_13760 0.72 -2.7
2,675,924 + eutL NOLOHH_13760 0.72 -1.9
2,675,925 - eutL NOLOHH_13760 0.72 +0.3
2,675,958 + eutL NOLOHH_13760 0.77 -2.1
2,675,999 + eutL NOLOHH_13760 0.84 +0.5
2,676,037 + eutL NOLOHH_13760 0.89 +1.0
2,676,037 + eutL NOLOHH_13760 0.89 -0.9
2,676,037 + eutL NOLOHH_13760 0.89 -0.2
2,676,434 - eutK NOLOHH_13765 0.63 -0.6
2,676,480 + eutK NOLOHH_13765 0.72 -0.2
2,676,481 - eutK NOLOHH_13765 0.72 -0.4
2,676,548 - eutK NOLOHH_13765 0.86 -0.0
2,676,583 + -0.8
2,676,643 + -2.5
2,676,701 + -0.8
2,676,702 - -1.3
2,676,786 - eutR NOLOHH_13770 0.11 +0.4
2,676,786 - eutR NOLOHH_13770 0.11 -0.1
2,676,786 - eutR NOLOHH_13770 0.11 +2.6
2,676,873 + eutR NOLOHH_13770 0.20 +0.1
2,676,902 + eutR NOLOHH_13770 0.23 +2.0
2,676,902 + eutR NOLOHH_13770 0.23 +1.5
2,676,902 + eutR NOLOHH_13770 0.23 -0.4
2,677,073 + eutR NOLOHH_13770 0.39 -2.0
2,677,150 - eutR NOLOHH_13770 0.46 -0.4
2,677,152 + eutR NOLOHH_13770 0.46 -1.8
2,677,152 + eutR NOLOHH_13770 0.46 -0.6
2,677,152 + eutR NOLOHH_13770 0.46 -1.2
2,677,152 + eutR NOLOHH_13770 0.46 +0.0
2,677,152 + eutR NOLOHH_13770 0.46 -1.6
2,677,152 + eutR NOLOHH_13770 0.46 -2.8
2,677,152 + eutR NOLOHH_13770 0.46 -0.8
2,677,152 + eutR NOLOHH_13770 0.46 +0.8
2,677,152 + eutR NOLOHH_13770 0.46 -0.4
2,677,152 + eutR NOLOHH_13770 0.46 +0.1
2,677,152 + eutR NOLOHH_13770 0.46 -1.8
2,677,152 + eutR NOLOHH_13770 0.46 +0.9
2,677,152 + eutR NOLOHH_13770 0.46 -0.8
2,677,153 - eutR NOLOHH_13770 0.46 -1.1
2,677,153 - eutR NOLOHH_13770 0.46 -0.2
2,677,153 - eutR NOLOHH_13770 0.46 +0.1
2,677,153 - eutR NOLOHH_13770 0.46 -1.6
2,677,156 + eutR NOLOHH_13770 0.47 +0.6
2,677,156 + eutR NOLOHH_13770 0.47 +1.4
2,677,156 + eutR NOLOHH_13770 0.47 -1.4
2,677,156 + eutR NOLOHH_13770 0.47 +0.5
2,677,156 + eutR NOLOHH_13770 0.47 -2.5
2,677,156 + eutR NOLOHH_13770 0.47 -0.3
2,677,156 + eutR NOLOHH_13770 0.47 -0.5
2,677,156 + eutR NOLOHH_13770 0.47 +0.4
2,677,157 - eutR NOLOHH_13770 0.47 -2.3
2,677,157 - eutR NOLOHH_13770 0.47 +0.2
2,677,157 - eutR NOLOHH_13770 0.47 -1.9
2,677,198 + eutR NOLOHH_13770 0.51 -0.1
2,677,377 - eutR NOLOHH_13770 0.68 -0.1
2,677,381 + eutR NOLOHH_13770 0.68 +1.6
2,677,386 + eutR NOLOHH_13770 0.68 +0.6
2,677,406 + eutR NOLOHH_13770 0.70 -2.9
2,677,406 + eutR NOLOHH_13770 0.70 -3.0
2,677,406 + eutR NOLOHH_13770 0.70 +0.9
2,677,407 - eutR NOLOHH_13770 0.70 +0.7
2,677,407 - eutR NOLOHH_13770 0.70 +0.1
2,677,453 + eutR NOLOHH_13770 0.75 +0.2
2,677,482 + eutR NOLOHH_13770 0.78 +0.8
2,677,596 + eutR NOLOHH_13770 0.88 -0.5
2,677,724 + -2.4
2,677,724 + -1.5
2,677,725 - +1.2
2,677,743 + +1.5
2,677,746 + +0.9
2,677,746 + -0.6
2,677,747 - +1.2
2,677,756 + +2.9
2,677,757 - +0.0
2,677,797 - -0.5
2,677,797 - -1.1
2,677,919 + hemF NOLOHH_13775 0.22 +0.4
2,677,963 - hemF NOLOHH_13775 0.27 +0.1
2,677,972 + hemF NOLOHH_13775 0.28 +2.2
2,677,982 - hemF NOLOHH_13775 0.29 +2.5
2,677,986 - hemF NOLOHH_13775 0.29 +0.5
2,678,108 + hemF NOLOHH_13775 0.43 -0.6
2,678,109 - hemF NOLOHH_13775 0.43 +0.2
2,678,109 - hemF NOLOHH_13775 0.43 +1.9
2,678,114 + hemF NOLOHH_13775 0.43 -0.4
2,678,220 - hemF NOLOHH_13775 0.55 +0.9
2,678,321 + hemF NOLOHH_13775 0.66 -2.2
2,678,322 - hemF NOLOHH_13775 0.67 -0.0
2,678,341 + hemF NOLOHH_13775 0.69 +0.5
2,678,598 + -1.0
2,678,622 + -1.0
2,678,622 + +0.4
2,678,672 + -1.4

Or see this region's nucleotide sequence