Strain Fitness in Escherichia coli ECOR27 around NOLOHH_07165

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaN and recF overlap by 1 nucleotidesrecF and gyrB_K447E are separated by 28 nucleotides NOLOHH_07160: dnaN - DNA polymerase III subunit beta, at 1,357,432 to 1,358,532 dnaN NOLOHH_07165: recF - DNA replication/repair protein RecF, at 1,358,532 to 1,359,605 recF NOLOHH_07170: gyrB_K447E - DNA topoisomerase (ATP-hydrolyzing) subunit B GyrB, at 1,359,634 to 1,362,048 _K447E Position (kb) 1358 1359 1360Strain fitness (log2 ratio) -3 -2 -1 0 1at 1358.530 kb on + strandat 1358.530 kb on + strandat 1358.530 kb on + strandat 1358.530 kb on + strandat 1358.531 kb on - strandat 1358.531 kb on - strandat 1358.531 kb on - strandat 1358.531 kb on - strandat 1358.531 kb on - strandat 1358.593 kb on + strandat 1358.593 kb on + strandat 1358.606 kb on + strandat 1358.607 kb on - strandat 1358.617 kb on + strandat 1358.617 kb on + strandat 1358.661 kb on + strand, within recFat 1358.661 kb on + strand, within recFat 1358.661 kb on + strand, within recFat 1358.661 kb on + strand, within recFat 1358.661 kb on + strand, within recFat 1358.662 kb on - strand, within recFat 1358.662 kb on - strand, within recFat 1358.662 kb on - strand, within recFat 1358.662 kb on - strand, within recFat 1358.662 kb on - strand, within recFat 1358.662 kb on - strand, within recFat 1358.662 kb on - strand, within recFat 1358.662 kb on - strand, within recFat 1358.662 kb on - strand, within recFat 1358.662 kb on - strand, within recFat 1358.663 kb on + strand, within recFat 1358.664 kb on - strand, within recFat 1358.664 kb on - strand, within recFat 1358.840 kb on + strand, within recFat 1358.840 kb on + strand, within recFat 1358.840 kb on + strand, within recFat 1358.841 kb on - strand, within recFat 1358.841 kb on - strand, within recFat 1358.897 kb on + strand, within recFat 1358.897 kb on + strand, within recFat 1358.898 kb on - strand, within recFat 1358.898 kb on - strand, within recFat 1358.898 kb on - strand, within recFat 1358.903 kb on - strand, within recFat 1358.922 kb on + strand, within recFat 1358.923 kb on - strand, within recFat 1359.114 kb on + strand, within recFat 1359.116 kb on + strand, within recFat 1359.153 kb on - strand, within recFat 1359.219 kb on + strand, within recFat 1359.219 kb on + strand, within recFat 1359.220 kb on - strand, within recFat 1359.220 kb on - strand, within recFat 1359.239 kb on + strand, within recFat 1359.239 kb on + strand, within recFat 1359.263 kb on - strand, within recFat 1359.263 kb on - strand, within recFat 1359.267 kb on + strand, within recFat 1359.267 kb on + strand, within recFat 1359.267 kb on + strand, within recFat 1359.268 kb on - strand, within recFat 1359.268 kb on - strand, within recFat 1359.268 kb on - strand, within recFat 1359.268 kb on - strand, within recFat 1359.287 kb on + strand, within recFat 1359.298 kb on + strand, within recFat 1359.298 kb on + strand, within recFat 1359.299 kb on - strand, within recFat 1359.299 kb on - strand, within recFat 1359.332 kb on + strand, within recFat 1359.332 kb on + strand, within recFat 1359.332 kb on + strand, within recFat 1359.332 kb on + strand, within recFat 1359.332 kb on + strand, within recFat 1359.333 kb on - strand, within recFat 1359.333 kb on - strand, within recFat 1359.333 kb on - strand, within recFat 1359.353 kb on + strand, within recFat 1359.353 kb on + strand, within recFat 1359.353 kb on + strand, within recFat 1359.354 kb on - strand, within recFat 1359.373 kb on + strand, within recFat 1359.427 kb on - strand, within recFat 1359.433 kb on + strand, within recFat 1359.433 kb on + strand, within recFat 1359.434 kb on - strand, within recFat 1359.490 kb on + strand, within recFat 1359.544 kb on + strandat 1359.544 kb on + strandat 1359.545 kb on - strandat 1359.545 kb on - strandat 1359.545 kb on - strandat 1359.545 kb on - strandat 1359.590 kb on + strandat 1359.612 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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1,358,530 + +0.3
1,358,530 + +0.4
1,358,530 + -0.6
1,358,530 + +0.2
1,358,531 - -1.7
1,358,531 - -0.9
1,358,531 - +1.1
1,358,531 - +0.7
1,358,531 - -0.6
1,358,593 + -0.9
1,358,593 + +0.5
1,358,606 + -0.0
1,358,607 - +0.5
1,358,617 + -0.7
1,358,617 + +1.6
1,358,661 + recF NOLOHH_07165 0.12 -0.4
1,358,661 + recF NOLOHH_07165 0.12 -2.3
1,358,661 + recF NOLOHH_07165 0.12 -1.4
1,358,661 + recF NOLOHH_07165 0.12 +0.2
1,358,661 + recF NOLOHH_07165 0.12 -1.2
1,358,662 - recF NOLOHH_07165 0.12 +0.1
1,358,662 - recF NOLOHH_07165 0.12 -3.2
1,358,662 - recF NOLOHH_07165 0.12 -0.7
1,358,662 - recF NOLOHH_07165 0.12 -1.4
1,358,662 - recF NOLOHH_07165 0.12 -0.5
1,358,662 - recF NOLOHH_07165 0.12 -3.5
1,358,662 - recF NOLOHH_07165 0.12 -2.4
1,358,662 - recF NOLOHH_07165 0.12 +0.8
1,358,662 - recF NOLOHH_07165 0.12 +0.2
1,358,662 - recF NOLOHH_07165 0.12 -1.6
1,358,663 + recF NOLOHH_07165 0.12 -0.6
1,358,664 - recF NOLOHH_07165 0.12 +0.0
1,358,664 - recF NOLOHH_07165 0.12 +0.1
1,358,840 + recF NOLOHH_07165 0.29 -1.2
1,358,840 + recF NOLOHH_07165 0.29 -2.8
1,358,840 + recF NOLOHH_07165 0.29 -0.5
1,358,841 - recF NOLOHH_07165 0.29 +0.7
1,358,841 - recF NOLOHH_07165 0.29 -0.8
1,358,897 + recF NOLOHH_07165 0.34 -1.7
1,358,897 + recF NOLOHH_07165 0.34 +1.1
1,358,898 - recF NOLOHH_07165 0.34 +0.7
1,358,898 - recF NOLOHH_07165 0.34 -1.2
1,358,898 - recF NOLOHH_07165 0.34 +0.2
1,358,903 - recF NOLOHH_07165 0.35 +0.2
1,358,922 + recF NOLOHH_07165 0.36 -0.7
1,358,923 - recF NOLOHH_07165 0.36 -0.5
1,359,114 + recF NOLOHH_07165 0.54 -1.0
1,359,116 + recF NOLOHH_07165 0.54 -0.8
1,359,153 - recF NOLOHH_07165 0.58 -1.7
1,359,219 + recF NOLOHH_07165 0.64 +1.0
1,359,219 + recF NOLOHH_07165 0.64 +1.1
1,359,220 - recF NOLOHH_07165 0.64 +1.3
1,359,220 - recF NOLOHH_07165 0.64 -0.8
1,359,239 + recF NOLOHH_07165 0.66 -0.3
1,359,239 + recF NOLOHH_07165 0.66 -3.0
1,359,263 - recF NOLOHH_07165 0.68 -0.0
1,359,263 - recF NOLOHH_07165 0.68 -0.0
1,359,267 + recF NOLOHH_07165 0.68 -0.3
1,359,267 + recF NOLOHH_07165 0.68 -1.1
1,359,267 + recF NOLOHH_07165 0.68 +0.5
1,359,268 - recF NOLOHH_07165 0.69 +1.1
1,359,268 - recF NOLOHH_07165 0.69 +0.1
1,359,268 - recF NOLOHH_07165 0.69 +0.1
1,359,268 - recF NOLOHH_07165 0.69 +1.7
1,359,287 + recF NOLOHH_07165 0.70 -0.9
1,359,298 + recF NOLOHH_07165 0.71 -0.7
1,359,298 + recF NOLOHH_07165 0.71 +1.2
1,359,299 - recF NOLOHH_07165 0.71 +0.6
1,359,299 - recF NOLOHH_07165 0.71 -0.9
1,359,332 + recF NOLOHH_07165 0.74 -0.1
1,359,332 + recF NOLOHH_07165 0.74 +1.2
1,359,332 + recF NOLOHH_07165 0.74 -0.4
1,359,332 + recF NOLOHH_07165 0.74 +0.8
1,359,332 + recF NOLOHH_07165 0.74 +0.5
1,359,333 - recF NOLOHH_07165 0.75 +1.0
1,359,333 - recF NOLOHH_07165 0.75 -0.5
1,359,333 - recF NOLOHH_07165 0.75 +0.8
1,359,353 + recF NOLOHH_07165 0.76 +1.3
1,359,353 + recF NOLOHH_07165 0.76 -1.0
1,359,353 + recF NOLOHH_07165 0.76 +0.1
1,359,354 - recF NOLOHH_07165 0.77 -1.4
1,359,373 + recF NOLOHH_07165 0.78 +0.5
1,359,427 - recF NOLOHH_07165 0.83 +1.0
1,359,433 + recF NOLOHH_07165 0.84 -2.6
1,359,433 + recF NOLOHH_07165 0.84 -3.5
1,359,434 - recF NOLOHH_07165 0.84 -0.8
1,359,490 + recF NOLOHH_07165 0.89 +0.4
1,359,544 + -0.2
1,359,544 + -0.7
1,359,545 - +0.3
1,359,545 - -1.8
1,359,545 - +0.8
1,359,545 - -0.9
1,359,590 + +0.6
1,359,612 + -1.2

Or see this region's nucleotide sequence