Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt xylE and psiE are separated by 43 nucleotides psiE and yjbH are separated by 594 nucleotides
NOLOHH_05300: xylE - D-xylose transporter XylE, at 976,261 to 977,736
xylE
NOLOHH_05305: psiE - phosphate-starvation-inducible protein PsiE, at 977,780 to 978,190
psiE
NOLOHH_05310: yjbH - Uncharacterized lipoprotein YjbH, at 978,785 to 980,881
yjbH
Position (kb) 977
978
979 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 976.846 kb on - strand, within xylE at 976.863 kb on + strand, within xylE at 976.864 kb on - strand, within xylE at 976.881 kb on + strand, within xylE at 976.882 kb on - strand, within xylE at 976.912 kb on + strand, within xylE at 976.913 kb on - strand, within xylE at 976.913 kb on - strand, within xylE at 976.975 kb on - strand, within xylE at 977.096 kb on + strand, within xylE at 977.097 kb on - strand, within xylE at 977.097 kb on - strand, within xylE at 977.152 kb on + strand, within xylE at 977.152 kb on + strand, within xylE at 977.152 kb on + strand, within xylE at 977.152 kb on + strand, within xylE at 977.153 kb on - strand, within xylE at 977.153 kb on - strand, within xylE at 977.218 kb on - strand, within xylE at 977.230 kb on - strand, within xylE at 977.260 kb on - strand, within xylE at 977.284 kb on - strand, within xylE at 977.326 kb on - strand, within xylE at 977.395 kb on + strand, within xylE at 977.395 kb on + strand, within xylE at 977.395 kb on + strand, within xylE at 977.395 kb on + strand, within xylE at 977.395 kb on + strand, within xylE at 977.395 kb on + strand, within xylE at 977.395 kb on + strand, within xylE at 977.395 kb on + strand, within xylE at 977.396 kb on - strand, within xylE at 977.396 kb on - strand, within xylE at 977.396 kb on - strand, within xylE at 977.518 kb on + strand, within xylE at 977.519 kb on - strand, within xylE at 977.519 kb on - strand, within xylE at 977.603 kb on - strand at 977.611 kb on - strand at 977.611 kb on - strand at 977.611 kb on - strand at 977.611 kb on - strand at 977.611 kb on - strand at 977.631 kb on - strand at 977.634 kb on + strand at 977.635 kb on - strand at 977.635 kb on - strand at 977.664 kb on + strand at 977.664 kb on + strand at 977.665 kb on - strand at 977.665 kb on - strand at 977.735 kb on - strand at 977.735 kb on - strand at 977.735 kb on - strand at 977.807 kb on - strand at 977.850 kb on + strand, within psiE at 977.875 kb on + strand, within psiE at 977.919 kb on + strand, within psiE at 977.920 kb on - strand, within psiE at 977.928 kb on + strand, within psiE at 977.929 kb on - strand, within psiE at 977.929 kb on - strand, within psiE at 977.961 kb on + strand, within psiE at 977.962 kb on - strand, within psiE at 977.981 kb on - strand, within psiE at 977.992 kb on - strand, within psiE at 978.001 kb on - strand, within psiE at 978.017 kb on + strand, within psiE at 978.017 kb on + strand, within psiE at 978.018 kb on - strand, within psiE at 978.028 kb on - strand, within psiE at 978.135 kb on - strand, within psiE at 978.157 kb on + strand at 978.157 kb on + strand at 978.190 kb on + strand at 978.190 kb on + strand at 978.191 kb on - strand at 978.191 kb on - strand at 978.196 kb on + strand at 978.224 kb on + strand at 978.224 kb on + strand at 978.225 kb on - strand at 978.225 kb on - strand at 978.225 kb on - strand at 978.225 kb on - strand at 978.225 kb on - strand at 978.251 kb on - strand at 978.264 kb on - strand at 978.311 kb on + strand at 978.313 kb on + strand at 978.313 kb on + strand at 978.314 kb on - strand at 978.314 kb on - strand at 978.314 kb on - strand at 978.314 kb on - strand at 978.314 kb on - strand at 978.314 kb on - strand at 978.314 kb on - strand at 978.314 kb on - strand at 978.324 kb on - strand at 978.468 kb on + strand at 978.499 kb on + strand at 978.499 kb on + strand at 978.541 kb on + strand at 978.542 kb on - strand at 978.542 kb on - strand at 978.542 kb on - strand at 978.559 kb on - strand at 978.679 kb on + strand at 978.679 kb on + strand at 978.737 kb on - strand at 978.822 kb on + strand at 978.823 kb on - strand at 978.836 kb on - strand at 978.939 kb on + strand at 978.939 kb on + strand at 978.939 kb on + strand at 978.939 kb on + strand at 978.939 kb on + strand at 978.940 kb on - strand at 978.940 kb on - strand at 978.940 kb on - strand at 978.970 kb on - strand at 978.988 kb on + strand at 979.093 kb on + strand, within yjbH at 979.094 kb on - strand, within yjbH at 979.094 kb on - strand, within yjbH at 979.098 kb on - strand, within yjbH at 979.098 kb on - strand, within yjbH at 979.158 kb on + strand, within yjbH at 979.158 kb on + strand, within yjbH at 979.158 kb on + strand, within yjbH at 979.159 kb on - strand, within yjbH at 979.177 kb on + strand, within yjbH at 979.178 kb on - strand, within yjbH at 979.190 kb on - strand, within yjbH
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 976,846 - xylE NOLOHH_05300 0.40 -0.1 976,863 + xylE NOLOHH_05300 0.41 -0.8 976,864 - xylE NOLOHH_05300 0.41 -0.3 976,881 + xylE NOLOHH_05300 0.42 -2.3 976,882 - xylE NOLOHH_05300 0.42 -2.3 976,912 + xylE NOLOHH_05300 0.44 +0.1 976,913 - xylE NOLOHH_05300 0.44 +0.6 976,913 - xylE NOLOHH_05300 0.44 -0.2 976,975 - xylE NOLOHH_05300 0.48 +0.9 977,096 + xylE NOLOHH_05300 0.57 -0.1 977,097 - xylE NOLOHH_05300 0.57 +0.0 977,097 - xylE NOLOHH_05300 0.57 +0.3 977,152 + xylE NOLOHH_05300 0.60 -0.5 977,152 + xylE NOLOHH_05300 0.60 -1.0 977,152 + xylE NOLOHH_05300 0.60 -0.7 977,152 + xylE NOLOHH_05300 0.60 -0.6 977,153 - xylE NOLOHH_05300 0.60 -1.1 977,153 - xylE NOLOHH_05300 0.60 +0.5 977,218 - xylE NOLOHH_05300 0.65 +0.3 977,230 - xylE NOLOHH_05300 0.66 -2.9 977,260 - xylE NOLOHH_05300 0.68 +2.1 977,284 - xylE NOLOHH_05300 0.69 -0.7 977,326 - xylE NOLOHH_05300 0.72 -0.5 977,395 + xylE NOLOHH_05300 0.77 +2.8 977,395 + xylE NOLOHH_05300 0.77 +1.0 977,395 + xylE NOLOHH_05300 0.77 -0.0 977,395 + xylE NOLOHH_05300 0.77 -0.2 977,395 + xylE NOLOHH_05300 0.77 -0.0 977,395 + xylE NOLOHH_05300 0.77 +2.0 977,395 + xylE NOLOHH_05300 0.77 +0.1 977,395 + xylE NOLOHH_05300 0.77 -2.0 977,396 - xylE NOLOHH_05300 0.77 -0.7 977,396 - xylE NOLOHH_05300 0.77 +0.8 977,396 - xylE NOLOHH_05300 0.77 +0.2 977,518 + xylE NOLOHH_05300 0.85 -0.1 977,519 - xylE NOLOHH_05300 0.85 +0.8 977,519 - xylE NOLOHH_05300 0.85 +0.7 977,603 - +0.2 977,611 - -1.0 977,611 - +0.5 977,611 - -2.2 977,611 - +0.5 977,611 - -0.1 977,631 - +0.7 977,634 + +1.5 977,635 - -0.2 977,635 - -1.7 977,664 + -2.7 977,664 + +0.2 977,665 - +0.9 977,665 - -0.6 977,735 - -0.4 977,735 - +0.2 977,735 - +1.1 977,807 - +0.0 977,850 + psiE NOLOHH_05305 0.17 -1.9 977,875 + psiE NOLOHH_05305 0.23 +0.0 977,919 + psiE NOLOHH_05305 0.34 -0.5 977,920 - psiE NOLOHH_05305 0.34 +0.7 977,928 + psiE NOLOHH_05305 0.36 +1.0 977,929 - psiE NOLOHH_05305 0.36 -2.4 977,929 - psiE NOLOHH_05305 0.36 +0.0 977,961 + psiE NOLOHH_05305 0.44 -1.2 977,962 - psiE NOLOHH_05305 0.44 -0.1 977,981 - psiE NOLOHH_05305 0.49 +0.7 977,992 - psiE NOLOHH_05305 0.52 +0.5 978,001 - psiE NOLOHH_05305 0.54 +2.6 978,017 + psiE NOLOHH_05305 0.58 -1.8 978,017 + psiE NOLOHH_05305 0.58 +1.6 978,018 - psiE NOLOHH_05305 0.58 +0.6 978,028 - psiE NOLOHH_05305 0.60 -0.1 978,135 - psiE NOLOHH_05305 0.86 +0.9 978,157 + +1.1 978,157 + +0.8 978,190 + +0.7 978,190 + +0.0 978,191 - +0.6 978,191 - +0.0 978,196 + -2.2 978,224 + +1.5 978,224 + +0.1 978,225 - -0.2 978,225 - -0.0 978,225 - +0.5 978,225 - -2.5 978,225 - -0.1 978,251 - -0.3 978,264 - -0.7 978,311 + +0.7 978,313 + -1.3 978,313 + -0.1 978,314 - +0.4 978,314 - -0.5 978,314 - +0.3 978,314 - +0.2 978,314 - +1.3 978,314 - +0.2 978,314 - +1.7 978,314 - -0.9 978,324 - +0.6 978,468 + -0.3 978,499 + -0.0 978,499 + -0.1 978,541 + -1.0 978,542 - -0.1 978,542 - -1.3 978,542 - +0.1 978,559 - +0.2 978,679 + +0.7 978,679 + -0.3 978,737 - +0.1 978,822 + -0.9 978,823 - -0.5 978,836 - -0.9 978,939 + +2.8 978,939 + +1.0 978,939 + +0.0 978,939 + +0.8 978,939 + +0.2 978,940 - +0.4 978,940 - -1.6 978,940 - +0.6 978,970 - -1.3 978,988 + -3.1 979,093 + yjbH NOLOHH_05310 0.15 +0.5 979,094 - yjbH NOLOHH_05310 0.15 -0.0 979,094 - yjbH NOLOHH_05310 0.15 +0.3 979,098 - yjbH NOLOHH_05310 0.15 +1.3 979,098 - yjbH NOLOHH_05310 0.15 +0.2 979,158 + yjbH NOLOHH_05310 0.18 +0.2 979,158 + yjbH NOLOHH_05310 0.18 +0.8 979,158 + yjbH NOLOHH_05310 0.18 +0.5 979,159 - yjbH NOLOHH_05310 0.18 +1.6 979,177 + yjbH NOLOHH_05310 0.19 +0.1 979,178 - yjbH NOLOHH_05310 0.19 -0.8 979,190 - yjbH NOLOHH_05310 0.19 -0.7
Or see this region's nucleotide sequence