Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hpaX and hpaA are separated by 9 nucleotides hpaA and hpaB are separated by 250 nucleotides
NOLOHH_03745: hpaX - 4-hydroxyphenylacetate permease, at 666,167 to 667,543
hpaX
NOLOHH_03750: hpaA - 4-hydroxyphenylacetate catabolism regulatory protein HpaA, at 667,553 to 668,443
hpaA
NOLOHH_03755: hpaB - 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component, at 668,694 to 670,256
hpaB
Position (kb) 667
668
669 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 666.556 kb on + strand, within hpaX at 666.556 kb on + strand, within hpaX at 666.556 kb on + strand, within hpaX at 666.556 kb on + strand, within hpaX at 666.557 kb on - strand, within hpaX at 666.557 kb on - strand, within hpaX at 666.606 kb on - strand, within hpaX at 666.606 kb on - strand, within hpaX at 666.609 kb on + strand, within hpaX at 666.609 kb on + strand, within hpaX at 666.610 kb on - strand, within hpaX at 666.629 kb on + strand, within hpaX at 666.663 kb on + strand, within hpaX at 666.738 kb on + strand, within hpaX at 666.738 kb on + strand, within hpaX at 666.739 kb on - strand, within hpaX at 666.739 kb on - strand, within hpaX at 666.784 kb on - strand, within hpaX at 666.786 kb on + strand, within hpaX at 666.836 kb on - strand, within hpaX at 666.986 kb on + strand, within hpaX at 666.986 kb on + strand, within hpaX at 666.986 kb on + strand, within hpaX at 666.986 kb on + strand, within hpaX at 666.986 kb on + strand, within hpaX at 666.987 kb on - strand, within hpaX at 666.987 kb on - strand, within hpaX at 666.987 kb on - strand, within hpaX at 666.987 kb on - strand, within hpaX at 666.987 kb on - strand, within hpaX at 666.987 kb on - strand, within hpaX at 666.987 kb on - strand, within hpaX at 666.998 kb on + strand, within hpaX at 666.999 kb on - strand, within hpaX at 667.021 kb on + strand, within hpaX at 667.021 kb on + strand, within hpaX at 667.021 kb on + strand, within hpaX at 667.022 kb on - strand, within hpaX at 667.078 kb on + strand, within hpaX at 667.078 kb on + strand, within hpaX at 667.078 kb on + strand, within hpaX at 667.079 kb on - strand, within hpaX at 667.081 kb on + strand, within hpaX at 667.081 kb on + strand, within hpaX at 667.120 kb on + strand, within hpaX at 667.121 kb on - strand, within hpaX at 667.139 kb on + strand, within hpaX at 667.140 kb on - strand, within hpaX at 667.196 kb on + strand, within hpaX at 667.196 kb on + strand, within hpaX at 667.196 kb on + strand, within hpaX at 667.196 kb on + strand, within hpaX at 667.196 kb on + strand, within hpaX at 667.197 kb on - strand, within hpaX at 667.197 kb on - strand, within hpaX at 667.197 kb on - strand, within hpaX at 667.197 kb on - strand, within hpaX at 667.197 kb on - strand, within hpaX at 667.197 kb on - strand, within hpaX at 667.197 kb on - strand, within hpaX at 667.271 kb on - strand, within hpaX at 667.358 kb on - strand, within hpaX at 667.398 kb on + strand, within hpaX at 667.399 kb on - strand, within hpaX at 667.399 kb on - strand, within hpaX at 667.409 kb on - strand at 667.444 kb on + strand at 667.496 kb on - strand at 667.576 kb on + strand at 667.628 kb on + strand at 667.628 kb on + strand at 667.669 kb on + strand, within hpaA at 667.669 kb on + strand, within hpaA at 667.670 kb on - strand, within hpaA at 667.694 kb on + strand, within hpaA at 667.694 kb on + strand, within hpaA at 667.694 kb on + strand, within hpaA at 667.695 kb on - strand, within hpaA at 667.734 kb on + strand, within hpaA at 667.735 kb on - strand, within hpaA at 667.735 kb on - strand, within hpaA at 667.798 kb on - strand, within hpaA at 667.811 kb on - strand, within hpaA at 667.942 kb on + strand, within hpaA at 667.942 kb on + strand, within hpaA at 667.943 kb on - strand, within hpaA at 667.986 kb on + strand, within hpaA at 667.986 kb on + strand, within hpaA at 668.062 kb on - strand, within hpaA at 668.062 kb on - strand, within hpaA at 668.118 kb on + strand, within hpaA at 668.140 kb on + strand, within hpaA at 668.203 kb on + strand, within hpaA at 668.332 kb on + strand, within hpaA at 668.333 kb on - strand, within hpaA at 668.354 kb on - strand, within hpaA at 668.516 kb on + strand at 668.516 kb on + strand at 668.517 kb on - strand at 668.517 kb on - strand at 668.517 kb on - strand at 668.517 kb on - strand at 668.517 kb on - strand at 668.517 kb on - strand at 668.517 kb on - strand at 668.679 kb on - strand at 668.683 kb on + strand at 668.683 kb on + strand at 668.683 kb on + strand at 668.684 kb on - strand at 668.684 kb on - strand at 668.684 kb on - strand at 668.684 kb on - strand at 668.749 kb on - strand at 668.749 kb on - strand at 668.781 kb on + strand at 668.781 kb on + strand at 668.781 kb on + strand at 668.781 kb on + strand at 668.781 kb on + strand at 668.781 kb on + strand at 668.781 kb on + strand at 668.781 kb on + strand at 668.781 kb on + strand at 668.781 kb on + strand at 668.781 kb on + strand at 668.781 kb on + strand at 668.781 kb on + strand at 668.781 kb on + strand at 668.782 kb on - strand at 668.782 kb on - strand at 668.782 kb on - strand at 668.782 kb on - strand at 668.782 kb on - strand at 668.782 kb on - strand at 668.782 kb on - strand at 668.782 kb on - strand at 668.782 kb on - strand at 668.782 kb on - strand at 668.782 kb on - strand at 668.783 kb on + strand at 668.783 kb on + strand at 668.783 kb on + strand at 668.783 kb on + strand at 668.783 kb on + strand at 668.783 kb on + strand at 668.784 kb on - strand at 668.784 kb on - strand at 668.784 kb on - strand at 668.784 kb on - strand at 668.787 kb on + strand at 668.788 kb on - strand at 668.788 kb on - strand at 668.813 kb on + strand at 668.813 kb on + strand at 668.859 kb on + strand, within hpaB at 668.859 kb on + strand, within hpaB at 668.860 kb on - strand, within hpaB at 668.931 kb on - strand, within hpaB at 668.936 kb on + strand, within hpaB at 669.015 kb on + strand, within hpaB at 669.015 kb on + strand, within hpaB at 669.016 kb on - strand, within hpaB at 669.016 kb on - strand, within hpaB at 669.042 kb on + strand, within hpaB at 669.042 kb on + strand, within hpaB at 669.042 kb on + strand, within hpaB at 669.043 kb on - strand, within hpaB at 669.087 kb on + strand, within hpaB at 669.087 kb on + strand, within hpaB at 669.114 kb on - strand, within hpaB at 669.120 kb on + strand, within hpaB at 669.121 kb on - strand, within hpaB at 669.147 kb on + strand, within hpaB at 669.148 kb on - strand, within hpaB at 669.201 kb on - strand, within hpaB at 669.216 kb on + strand, within hpaB at 669.217 kb on - strand, within hpaB at 669.217 kb on - strand, within hpaB at 669.217 kb on - strand, within hpaB at 669.300 kb on + strand, within hpaB at 669.301 kb on - strand, within hpaB at 669.301 kb on - strand, within hpaB at 669.301 kb on - strand, within hpaB at 669.414 kb on + strand, within hpaB at 669.414 kb on + strand, within hpaB at 669.414 kb on + strand, within hpaB at 669.415 kb on - strand, within hpaB at 669.415 kb on - strand, within hpaB
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 666,556 + hpaX NOLOHH_03745 0.28 -1.6 666,556 + hpaX NOLOHH_03745 0.28 -0.5 666,556 + hpaX NOLOHH_03745 0.28 -0.5 666,556 + hpaX NOLOHH_03745 0.28 -0.6 666,557 - hpaX NOLOHH_03745 0.28 +1.6 666,557 - hpaX NOLOHH_03745 0.28 +1.1 666,606 - hpaX NOLOHH_03745 0.32 +0.1 666,606 - hpaX NOLOHH_03745 0.32 +0.8 666,609 + hpaX NOLOHH_03745 0.32 +0.7 666,609 + hpaX NOLOHH_03745 0.32 +0.7 666,610 - hpaX NOLOHH_03745 0.32 +0.5 666,629 + hpaX NOLOHH_03745 0.34 -3.4 666,663 + hpaX NOLOHH_03745 0.36 -1.4 666,738 + hpaX NOLOHH_03745 0.41 -2.5 666,738 + hpaX NOLOHH_03745 0.41 +2.2 666,739 - hpaX NOLOHH_03745 0.42 -0.3 666,739 - hpaX NOLOHH_03745 0.42 -0.1 666,784 - hpaX NOLOHH_03745 0.45 +1.3 666,786 + hpaX NOLOHH_03745 0.45 -1.1 666,836 - hpaX NOLOHH_03745 0.49 -1.0 666,986 + hpaX NOLOHH_03745 0.59 +0.3 666,986 + hpaX NOLOHH_03745 0.59 +0.2 666,986 + hpaX NOLOHH_03745 0.59 -1.5 666,986 + hpaX NOLOHH_03745 0.59 -0.1 666,986 + hpaX NOLOHH_03745 0.59 +0.4 666,987 - hpaX NOLOHH_03745 0.60 +0.0 666,987 - hpaX NOLOHH_03745 0.60 -0.8 666,987 - hpaX NOLOHH_03745 0.60 -0.5 666,987 - hpaX NOLOHH_03745 0.60 +0.7 666,987 - hpaX NOLOHH_03745 0.60 -1.6 666,987 - hpaX NOLOHH_03745 0.60 +0.3 666,987 - hpaX NOLOHH_03745 0.60 -1.3 666,998 + hpaX NOLOHH_03745 0.60 +0.7 666,999 - hpaX NOLOHH_03745 0.60 +0.1 667,021 + hpaX NOLOHH_03745 0.62 +0.4 667,021 + hpaX NOLOHH_03745 0.62 -0.0 667,021 + hpaX NOLOHH_03745 0.62 +0.2 667,022 - hpaX NOLOHH_03745 0.62 +0.3 667,078 + hpaX NOLOHH_03745 0.66 +0.8 667,078 + hpaX NOLOHH_03745 0.66 -1.1 667,078 + hpaX NOLOHH_03745 0.66 +0.7 667,079 - hpaX NOLOHH_03745 0.66 +2.1 667,081 + hpaX NOLOHH_03745 0.66 -1.5 667,081 + hpaX NOLOHH_03745 0.66 -1.4 667,120 + hpaX NOLOHH_03745 0.69 +0.1 667,121 - hpaX NOLOHH_03745 0.69 +0.3 667,139 + hpaX NOLOHH_03745 0.71 +0.4 667,140 - hpaX NOLOHH_03745 0.71 +0.3 667,196 + hpaX NOLOHH_03745 0.75 -1.8 667,196 + hpaX NOLOHH_03745 0.75 +0.6 667,196 + hpaX NOLOHH_03745 0.75 -1.0 667,196 + hpaX NOLOHH_03745 0.75 -1.4 667,196 + hpaX NOLOHH_03745 0.75 -1.2 667,197 - hpaX NOLOHH_03745 0.75 +2.0 667,197 - hpaX NOLOHH_03745 0.75 +1.1 667,197 - hpaX NOLOHH_03745 0.75 +0.6 667,197 - hpaX NOLOHH_03745 0.75 +1.2 667,197 - hpaX NOLOHH_03745 0.75 -0.3 667,197 - hpaX NOLOHH_03745 0.75 +0.6 667,197 - hpaX NOLOHH_03745 0.75 -0.7 667,271 - hpaX NOLOHH_03745 0.80 +0.4 667,358 - hpaX NOLOHH_03745 0.86 +1.9 667,398 + hpaX NOLOHH_03745 0.89 +0.6 667,399 - hpaX NOLOHH_03745 0.89 -0.9 667,399 - hpaX NOLOHH_03745 0.89 +0.7 667,409 - +0.3 667,444 + +1.1 667,496 - -0.4 667,576 + -1.0 667,628 + -1.0 667,628 + -1.1 667,669 + hpaA NOLOHH_03750 0.13 -1.6 667,669 + hpaA NOLOHH_03750 0.13 -0.6 667,670 - hpaA NOLOHH_03750 0.13 +0.8 667,694 + hpaA NOLOHH_03750 0.16 +0.5 667,694 + hpaA NOLOHH_03750 0.16 -0.5 667,694 + hpaA NOLOHH_03750 0.16 +0.9 667,695 - hpaA NOLOHH_03750 0.16 +0.8 667,734 + hpaA NOLOHH_03750 0.20 -0.1 667,735 - hpaA NOLOHH_03750 0.20 -0.4 667,735 - hpaA NOLOHH_03750 0.20 -1.2 667,798 - hpaA NOLOHH_03750 0.27 -0.2 667,811 - hpaA NOLOHH_03750 0.29 -0.3 667,942 + hpaA NOLOHH_03750 0.44 -0.9 667,942 + hpaA NOLOHH_03750 0.44 +0.6 667,943 - hpaA NOLOHH_03750 0.44 -0.5 667,986 + hpaA NOLOHH_03750 0.49 +1.8 667,986 + hpaA NOLOHH_03750 0.49 -1.5 668,062 - hpaA NOLOHH_03750 0.57 +0.5 668,062 - hpaA NOLOHH_03750 0.57 -1.8 668,118 + hpaA NOLOHH_03750 0.63 +0.5 668,140 + hpaA NOLOHH_03750 0.66 -0.2 668,203 + hpaA NOLOHH_03750 0.73 +0.2 668,332 + hpaA NOLOHH_03750 0.87 -1.9 668,333 - hpaA NOLOHH_03750 0.88 +0.3 668,354 - hpaA NOLOHH_03750 0.90 +0.5 668,516 + +0.8 668,516 + +0.4 668,517 - -0.5 668,517 - +0.3 668,517 - +1.6 668,517 - +0.4 668,517 - +0.7 668,517 - +1.0 668,517 - +0.4 668,679 - -0.2 668,683 + +0.4 668,683 + +0.6 668,683 + +0.4 668,684 - +1.1 668,684 - -0.7 668,684 - -2.7 668,684 - +0.1 668,749 - +0.1 668,749 - +0.1 668,781 + -0.9 668,781 + +0.1 668,781 + +1.0 668,781 + +1.8 668,781 + -1.2 668,781 + -2.6 668,781 + +0.1 668,781 + -0.5 668,781 + -1.5 668,781 + -1.6 668,781 + +0.3 668,781 + -1.6 668,781 + +0.9 668,781 + -1.2 668,782 - +0.2 668,782 - +0.2 668,782 - -0.7 668,782 - -0.0 668,782 - -2.3 668,782 - -1.3 668,782 - -2.1 668,782 - +0.7 668,782 - +1.1 668,782 - -2.6 668,782 - +0.9 668,783 + +0.4 668,783 + +0.3 668,783 + -0.0 668,783 + -0.4 668,783 + -0.8 668,783 + -0.0 668,784 - +0.3 668,784 - +0.2 668,784 - -0.2 668,784 - -0.2 668,787 + +0.4 668,788 - -0.6 668,788 - +0.1 668,813 + -1.6 668,813 + -0.3 668,859 + hpaB NOLOHH_03755 0.11 -0.7 668,859 + hpaB NOLOHH_03755 0.11 +0.6 668,860 - hpaB NOLOHH_03755 0.11 +0.4 668,931 - hpaB NOLOHH_03755 0.15 -0.7 668,936 + hpaB NOLOHH_03755 0.15 -1.1 669,015 + hpaB NOLOHH_03755 0.21 +2.8 669,015 + hpaB NOLOHH_03755 0.21 -0.2 669,016 - hpaB NOLOHH_03755 0.21 +1.1 669,016 - hpaB NOLOHH_03755 0.21 +1.7 669,042 + hpaB NOLOHH_03755 0.22 +0.1 669,042 + hpaB NOLOHH_03755 0.22 +0.1 669,042 + hpaB NOLOHH_03755 0.22 -1.4 669,043 - hpaB NOLOHH_03755 0.22 +0.7 669,087 + hpaB NOLOHH_03755 0.25 -0.3 669,087 + hpaB NOLOHH_03755 0.25 -3.2 669,114 - hpaB NOLOHH_03755 0.27 +0.7 669,120 + hpaB NOLOHH_03755 0.27 -2.2 669,121 - hpaB NOLOHH_03755 0.27 -0.0 669,147 + hpaB NOLOHH_03755 0.29 -0.9 669,148 - hpaB NOLOHH_03755 0.29 +0.8 669,201 - hpaB NOLOHH_03755 0.32 +0.6 669,216 + hpaB NOLOHH_03755 0.33 +0.2 669,217 - hpaB NOLOHH_03755 0.33 -0.6 669,217 - hpaB NOLOHH_03755 0.33 -0.3 669,217 - hpaB NOLOHH_03755 0.33 +0.5 669,300 + hpaB NOLOHH_03755 0.39 +0.1 669,301 - hpaB NOLOHH_03755 0.39 -1.0 669,301 - hpaB NOLOHH_03755 0.39 +0.8 669,301 - hpaB NOLOHH_03755 0.39 +0.7 669,414 + hpaB NOLOHH_03755 0.46 +1.4 669,414 + hpaB NOLOHH_03755 0.46 +0.6 669,414 + hpaB NOLOHH_03755 0.46 +0.8 669,415 - hpaB NOLOHH_03755 0.46 -0.4 669,415 - hpaB NOLOHH_03755 0.46 -0.1
Or see this region's nucleotide sequence