Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjjQ and yjjP are separated by 618 nucleotides yjjP and yjjB overlap by 10 nucleotides yjjB and dnaT are separated by 106 nucleotides
NOLOHH_03655: yjjQ - Putative transcription factor YjjQ, at 646,934 to 647,659
yjjQ
NOLOHH_03660: yjjP - putative succinate transporter subunit YjjP, at 648,278 to 649,048
yjjP
NOLOHH_03665: yjjB - threonine/serine exporter, at 649,039 to 649,512
yjjB
NOLOHH_03670: dnaT - primosomal protein DnaT, at 649,619 to 650,158
dnaT
Position (kb) 648
649
650 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 647.294 kb on + strand, within yjjQ at 647.295 kb on - strand, within yjjQ at 647.337 kb on - strand, within yjjQ at 647.514 kb on - strand, within yjjQ at 647.520 kb on - strand, within yjjQ at 647.875 kb on - strand at 648.045 kb on - strand at 648.104 kb on + strand at 648.104 kb on + strand at 648.105 kb on - strand at 648.105 kb on - strand at 648.125 kb on + strand at 648.168 kb on - strand at 648.220 kb on - strand at 648.248 kb on - strand at 648.248 kb on - strand at 648.260 kb on + strand at 648.317 kb on - strand at 648.457 kb on + strand, within yjjP at 648.457 kb on + strand, within yjjP at 648.508 kb on + strand, within yjjP at 648.509 kb on - strand, within yjjP at 648.509 kb on - strand, within yjjP at 648.511 kb on + strand, within yjjP at 648.511 kb on + strand, within yjjP at 648.511 kb on + strand, within yjjP at 648.511 kb on + strand, within yjjP at 648.511 kb on + strand, within yjjP at 648.512 kb on - strand, within yjjP at 648.512 kb on - strand, within yjjP at 648.512 kb on - strand, within yjjP at 648.512 kb on - strand, within yjjP at 648.512 kb on - strand, within yjjP at 648.512 kb on - strand, within yjjP at 648.512 kb on - strand, within yjjP at 648.512 kb on - strand, within yjjP at 648.573 kb on - strand, within yjjP at 648.612 kb on + strand, within yjjP at 648.612 kb on + strand, within yjjP at 648.612 kb on + strand, within yjjP at 648.613 kb on - strand, within yjjP at 648.613 kb on - strand, within yjjP at 648.613 kb on - strand, within yjjP at 648.613 kb on - strand, within yjjP at 648.613 kb on - strand, within yjjP at 648.634 kb on - strand, within yjjP at 648.634 kb on - strand, within yjjP at 648.634 kb on - strand, within yjjP at 648.734 kb on + strand, within yjjP at 648.734 kb on + strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.735 kb on - strand, within yjjP at 648.850 kb on + strand, within yjjP at 648.850 kb on + strand, within yjjP at 648.909 kb on + strand, within yjjP at 648.909 kb on + strand, within yjjP at 648.910 kb on - strand, within yjjP at 648.910 kb on - strand, within yjjP at 648.910 kb on - strand, within yjjP at 648.910 kb on - strand, within yjjP at 648.931 kb on + strand, within yjjP at 649.077 kb on + strand at 649.077 kb on + strand at 649.078 kb on - strand at 649.078 kb on - strand at 649.193 kb on + strand, within yjjB at 649.193 kb on + strand, within yjjB at 649.194 kb on - strand, within yjjB at 649.213 kb on - strand, within yjjB at 649.260 kb on + strand, within yjjB at 649.280 kb on - strand, within yjjB at 649.481 kb on + strand at 649.566 kb on + strand at 649.569 kb on + strand at 649.569 kb on + strand at 649.571 kb on + strand at 649.604 kb on + strand at 649.618 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 647,294 + yjjQ NOLOHH_03655 0.50 -1.8 647,295 - yjjQ NOLOHH_03655 0.50 +3.2 647,337 - yjjQ NOLOHH_03655 0.56 +0.8 647,514 - yjjQ NOLOHH_03655 0.80 +0.5 647,520 - yjjQ NOLOHH_03655 0.81 +0.8 647,875 - +2.6 648,045 - -0.2 648,104 + +0.6 648,104 + +1.2 648,105 - +1.1 648,105 - -1.4 648,125 + +0.2 648,168 - +1.0 648,220 - -0.0 648,248 - +1.1 648,248 - +0.4 648,260 + -0.2 648,317 - -2.9 648,457 + yjjP NOLOHH_03660 0.23 +0.4 648,457 + yjjP NOLOHH_03660 0.23 -0.8 648,508 + yjjP NOLOHH_03660 0.30 -1.4 648,509 - yjjP NOLOHH_03660 0.30 +0.3 648,509 - yjjP NOLOHH_03660 0.30 -0.5 648,511 + yjjP NOLOHH_03660 0.30 -0.0 648,511 + yjjP NOLOHH_03660 0.30 +0.6 648,511 + yjjP NOLOHH_03660 0.30 -1.0 648,511 + yjjP NOLOHH_03660 0.30 +0.5 648,511 + yjjP NOLOHH_03660 0.30 +0.9 648,512 - yjjP NOLOHH_03660 0.30 -1.9 648,512 - yjjP NOLOHH_03660 0.30 -0.7 648,512 - yjjP NOLOHH_03660 0.30 +1.0 648,512 - yjjP NOLOHH_03660 0.30 +0.6 648,512 - yjjP NOLOHH_03660 0.30 +0.2 648,512 - yjjP NOLOHH_03660 0.30 -1.1 648,512 - yjjP NOLOHH_03660 0.30 -0.2 648,512 - yjjP NOLOHH_03660 0.30 -1.1 648,573 - yjjP NOLOHH_03660 0.38 +0.6 648,612 + yjjP NOLOHH_03660 0.43 -0.5 648,612 + yjjP NOLOHH_03660 0.43 -0.1 648,612 + yjjP NOLOHH_03660 0.43 +1.3 648,613 - yjjP NOLOHH_03660 0.43 +0.0 648,613 - yjjP NOLOHH_03660 0.43 -0.3 648,613 - yjjP NOLOHH_03660 0.43 +0.4 648,613 - yjjP NOLOHH_03660 0.43 -1.1 648,613 - yjjP NOLOHH_03660 0.43 +0.5 648,634 - yjjP NOLOHH_03660 0.46 -0.7 648,634 - yjjP NOLOHH_03660 0.46 +0.7 648,634 - yjjP NOLOHH_03660 0.46 -0.0 648,734 + yjjP NOLOHH_03660 0.59 +0.5 648,734 + yjjP NOLOHH_03660 0.59 +1.2 648,735 - yjjP NOLOHH_03660 0.59 +1.3 648,735 - yjjP NOLOHH_03660 0.59 -0.4 648,735 - yjjP NOLOHH_03660 0.59 +1.7 648,735 - yjjP NOLOHH_03660 0.59 -0.9 648,735 - yjjP NOLOHH_03660 0.59 -0.6 648,735 - yjjP NOLOHH_03660 0.59 -0.2 648,735 - yjjP NOLOHH_03660 0.59 +0.6 648,735 - yjjP NOLOHH_03660 0.59 +0.3 648,735 - yjjP NOLOHH_03660 0.59 +1.6 648,735 - yjjP NOLOHH_03660 0.59 -0.9 648,735 - yjjP NOLOHH_03660 0.59 +1.4 648,735 - yjjP NOLOHH_03660 0.59 -0.3 648,850 + yjjP NOLOHH_03660 0.74 -2.5 648,850 + yjjP NOLOHH_03660 0.74 +1.6 648,909 + yjjP NOLOHH_03660 0.82 +1.0 648,909 + yjjP NOLOHH_03660 0.82 -1.1 648,910 - yjjP NOLOHH_03660 0.82 -0.4 648,910 - yjjP NOLOHH_03660 0.82 -2.2 648,910 - yjjP NOLOHH_03660 0.82 +0.4 648,910 - yjjP NOLOHH_03660 0.82 -1.0 648,931 + yjjP NOLOHH_03660 0.85 +0.8 649,077 + -0.5 649,077 + +1.1 649,078 - +0.5 649,078 - -0.6 649,193 + yjjB NOLOHH_03665 0.32 +0.7 649,193 + yjjB NOLOHH_03665 0.32 -0.6 649,194 - yjjB NOLOHH_03665 0.33 +0.5 649,213 - yjjB NOLOHH_03665 0.37 +0.4 649,260 + yjjB NOLOHH_03665 0.47 -2.4 649,280 - yjjB NOLOHH_03665 0.51 +1.1 649,481 + +0.3 649,566 + +0.1 649,569 + -0.1 649,569 + +0.6 649,571 + -1.7 649,604 + +1.4 649,618 + -0.8
Or see this region's nucleotide sequence