Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt araB and araD are separated by 168 nucleotides araD and polB are separated by 74 nucleotides
NOLOHH_03130: araB - ribulokinase, at 540,893 to 542,395
araB
NOLOHH_03135: araD - L-ribulose-5-phosphate 4-epimerase, at 542,564 to 543,259
araD
NOLOHH_03140: polB - DNA polymerase II, at 543,334 to 545,685
polB
Position (kb) 542
543
544 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 541.589 kb on + strand, within araB at 541.590 kb on - strand, within araB at 541.601 kb on + strand, within araB at 541.601 kb on + strand, within araB at 541.895 kb on + strand, within araB at 541.895 kb on + strand, within araB at 541.895 kb on + strand, within araB at 541.895 kb on + strand, within araB at 541.895 kb on + strand, within araB at 541.896 kb on - strand, within araB at 541.896 kb on - strand, within araB at 541.896 kb on - strand, within araB at 541.901 kb on + strand, within araB at 541.901 kb on + strand, within araB at 541.902 kb on - strand, within araB at 541.902 kb on - strand, within araB at 541.902 kb on - strand, within araB at 541.902 kb on - strand, within araB at 541.918 kb on + strand, within araB at 541.919 kb on - strand, within araB at 541.943 kb on - strand, within araB at 541.943 kb on - strand, within araB at 541.972 kb on - strand, within araB at 542.113 kb on + strand, within araB at 542.113 kb on + strand, within araB at 542.119 kb on + strand, within araB at 542.375 kb on + strand at 542.375 kb on + strand at 542.375 kb on + strand at 542.376 kb on - strand at 542.397 kb on + strand at 542.397 kb on + strand at 542.398 kb on - strand at 542.410 kb on + strand at 542.410 kb on + strand at 542.410 kb on + strand at 542.410 kb on + strand at 542.410 kb on + strand at 542.411 kb on - strand at 542.411 kb on - strand at 542.411 kb on - strand at 542.411 kb on - strand at 542.411 kb on - strand at 542.414 kb on + strand at 542.414 kb on + strand at 542.414 kb on + strand at 542.415 kb on - strand at 542.415 kb on - strand at 542.443 kb on - strand at 542.443 kb on - strand at 542.469 kb on - strand at 542.568 kb on + strand at 542.569 kb on - strand at 542.590 kb on - strand at 542.592 kb on + strand at 542.592 kb on + strand at 542.592 kb on + strand at 542.593 kb on - strand at 542.705 kb on + strand, within araD at 542.741 kb on - strand, within araD at 542.771 kb on - strand, within araD at 542.771 kb on - strand, within araD at 542.931 kb on - strand, within araD at 542.985 kb on - strand, within araD at 542.985 kb on - strand, within araD at 543.146 kb on + strand, within araD at 543.146 kb on + strand, within araD at 543.146 kb on + strand, within araD at 543.146 kb on + strand, within araD at 543.146 kb on + strand, within araD at 543.146 kb on + strand, within araD at 543.146 kb on + strand, within araD at 543.147 kb on - strand, within araD at 543.147 kb on - strand, within araD at 543.147 kb on - strand, within araD at 543.148 kb on + strand, within araD at 543.149 kb on - strand, within araD at 543.149 kb on - strand, within araD at 543.149 kb on - strand, within araD at 543.149 kb on - strand, within araD at 543.218 kb on + strand at 543.219 kb on - strand at 543.226 kb on + strand at 543.227 kb on - strand at 543.245 kb on + strand at 543.245 kb on + strand at 543.245 kb on + strand at 543.246 kb on - strand at 543.248 kb on + strand at 543.257 kb on + strand at 543.266 kb on + strand at 543.267 kb on - strand at 543.301 kb on + strand at 543.302 kb on - strand at 543.302 kb on - strand at 543.352 kb on - strand at 543.357 kb on - strand at 543.499 kb on - strand at 543.568 kb on + strand at 543.569 kb on - strand at 543.569 kb on - strand at 543.569 kb on - strand at 543.569 kb on - strand at 543.577 kb on + strand, within polB at 543.577 kb on + strand, within polB at 543.607 kb on + strand, within polB at 543.644 kb on - strand, within polB at 543.691 kb on - strand, within polB at 543.721 kb on - strand, within polB at 543.795 kb on + strand, within polB at 543.795 kb on + strand, within polB at 543.795 kb on + strand, within polB at 543.796 kb on - strand, within polB at 543.797 kb on + strand, within polB at 543.797 kb on + strand, within polB at 543.797 kb on + strand, within polB at 543.797 kb on + strand, within polB at 543.797 kb on + strand, within polB at 543.797 kb on + strand, within polB at 543.797 kb on + strand, within polB at 543.797 kb on + strand, within polB at 543.798 kb on - strand, within polB at 543.798 kb on - strand, within polB at 543.798 kb on - strand, within polB at 543.798 kb on - strand, within polB at 543.798 kb on - strand, within polB at 543.802 kb on - strand, within polB at 543.802 kb on - strand, within polB at 543.829 kb on + strand, within polB at 543.830 kb on - strand, within polB at 543.868 kb on + strand, within polB at 543.868 kb on + strand, within polB at 543.868 kb on + strand, within polB at 543.868 kb on + strand, within polB at 543.868 kb on + strand, within polB at 543.868 kb on + strand, within polB at 543.868 kb on + strand, within polB at 543.868 kb on + strand, within polB at 543.868 kb on + strand, within polB at 543.869 kb on - strand, within polB at 543.869 kb on - strand, within polB at 543.870 kb on + strand, within polB at 543.870 kb on + strand, within polB at 543.922 kb on + strand, within polB at 543.923 kb on - strand, within polB at 543.923 kb on - strand, within polB at 543.923 kb on - strand, within polB at 544.113 kb on + strand, within polB at 544.152 kb on - strand, within polB at 544.152 kb on - strand, within polB at 544.232 kb on + strand, within polB at 544.233 kb on - strand, within polB at 544.233 kb on - strand, within polB at 544.236 kb on - strand, within polB at 544.252 kb on - strand, within polB
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 541,589 + araB NOLOHH_03130 0.46 -3.2 541,590 - araB NOLOHH_03130 0.46 -3.0 541,601 + araB NOLOHH_03130 0.47 -2.3 541,601 + araB NOLOHH_03130 0.47 -3.1 541,895 + araB NOLOHH_03130 0.67 -2.0 541,895 + araB NOLOHH_03130 0.67 -3.4 541,895 + araB NOLOHH_03130 0.67 -1.5 541,895 + araB NOLOHH_03130 0.67 -2.2 541,895 + araB NOLOHH_03130 0.67 -1.2 541,896 - araB NOLOHH_03130 0.67 -3.1 541,896 - araB NOLOHH_03130 0.67 -3.2 541,896 - araB NOLOHH_03130 0.67 -2.3 541,901 + araB NOLOHH_03130 0.67 -2.1 541,901 + araB NOLOHH_03130 0.67 -2.5 541,902 - araB NOLOHH_03130 0.67 -2.3 541,902 - araB NOLOHH_03130 0.67 -3.5 541,902 - araB NOLOHH_03130 0.67 -2.6 541,902 - araB NOLOHH_03130 0.67 -1.2 541,918 + araB NOLOHH_03130 0.68 -1.0 541,919 - araB NOLOHH_03130 0.68 -3.7 541,943 - araB NOLOHH_03130 0.70 -3.4 541,943 - araB NOLOHH_03130 0.70 -0.9 541,972 - araB NOLOHH_03130 0.72 -2.0 542,113 + araB NOLOHH_03130 0.81 -1.4 542,113 + araB NOLOHH_03130 0.81 -3.1 542,119 + araB NOLOHH_03130 0.82 -2.2 542,375 + -3.6 542,375 + -2.0 542,375 + -1.1 542,376 - -3.4 542,397 + -2.6 542,397 + -1.0 542,398 - -2.1 542,410 + -2.3 542,410 + +0.1 542,410 + -2.3 542,410 + -1.7 542,410 + -3.2 542,411 - -0.6 542,411 - -3.1 542,411 - -3.1 542,411 - -3.2 542,411 - -1.1 542,414 + -2.7 542,414 + +1.3 542,414 + -1.5 542,415 - -2.7 542,415 - -2.6 542,443 - -3.6 542,443 - -1.7 542,469 - -2.8 542,568 + -2.2 542,569 - -1.7 542,590 - -2.2 542,592 + -3.8 542,592 + -3.0 542,592 + -2.8 542,593 - -2.5 542,705 + araD NOLOHH_03135 0.20 -1.3 542,741 - araD NOLOHH_03135 0.25 -3.9 542,771 - araD NOLOHH_03135 0.30 -3.0 542,771 - araD NOLOHH_03135 0.30 -2.5 542,931 - araD NOLOHH_03135 0.53 -2.4 542,985 - araD NOLOHH_03135 0.60 -3.8 542,985 - araD NOLOHH_03135 0.60 -1.1 543,146 + araD NOLOHH_03135 0.84 -3.9 543,146 + araD NOLOHH_03135 0.84 -3.5 543,146 + araD NOLOHH_03135 0.84 -1.5 543,146 + araD NOLOHH_03135 0.84 -2.4 543,146 + araD NOLOHH_03135 0.84 -2.0 543,146 + araD NOLOHH_03135 0.84 -1.6 543,146 + araD NOLOHH_03135 0.84 -1.8 543,147 - araD NOLOHH_03135 0.84 -1.3 543,147 - araD NOLOHH_03135 0.84 -4.1 543,147 - araD NOLOHH_03135 0.84 -2.0 543,148 + araD NOLOHH_03135 0.84 -3.1 543,149 - araD NOLOHH_03135 0.84 -3.7 543,149 - araD NOLOHH_03135 0.84 -2.9 543,149 - araD NOLOHH_03135 0.84 -1.6 543,149 - araD NOLOHH_03135 0.84 -2.7 543,218 + -1.8 543,219 - -3.9 543,226 + -3.2 543,227 - -2.1 543,245 + -3.7 543,245 + -0.9 543,245 + -2.6 543,246 - -0.6 543,248 + -4.5 543,257 + +0.9 543,266 + -0.1 543,267 - +0.6 543,301 + +0.7 543,302 - +0.4 543,302 - +1.0 543,352 - +0.2 543,357 - +0.3 543,499 - +0.2 543,568 + +0.3 543,569 - -0.0 543,569 - -2.3 543,569 - +0.6 543,569 - +0.5 543,577 + polB NOLOHH_03140 0.10 +0.5 543,577 + polB NOLOHH_03140 0.10 +1.1 543,607 + polB NOLOHH_03140 0.12 -1.0 543,644 - polB NOLOHH_03140 0.13 +1.5 543,691 - polB NOLOHH_03140 0.15 -0.2 543,721 - polB NOLOHH_03140 0.16 -0.2 543,795 + polB NOLOHH_03140 0.20 -0.5 543,795 + polB NOLOHH_03140 0.20 +0.8 543,795 + polB NOLOHH_03140 0.20 -0.6 543,796 - polB NOLOHH_03140 0.20 +0.2 543,797 + polB NOLOHH_03140 0.20 -0.4 543,797 + polB NOLOHH_03140 0.20 -0.3 543,797 + polB NOLOHH_03140 0.20 +1.6 543,797 + polB NOLOHH_03140 0.20 -0.9 543,797 + polB NOLOHH_03140 0.20 +0.3 543,797 + polB NOLOHH_03140 0.20 +0.3 543,797 + polB NOLOHH_03140 0.20 +0.4 543,797 + polB NOLOHH_03140 0.20 -0.4 543,798 - polB NOLOHH_03140 0.20 +2.3 543,798 - polB NOLOHH_03140 0.20 -0.6 543,798 - polB NOLOHH_03140 0.20 +1.7 543,798 - polB NOLOHH_03140 0.20 +1.0 543,798 - polB NOLOHH_03140 0.20 -0.3 543,802 - polB NOLOHH_03140 0.20 -0.3 543,802 - polB NOLOHH_03140 0.20 -0.2 543,829 + polB NOLOHH_03140 0.21 -0.3 543,830 - polB NOLOHH_03140 0.21 -1.7 543,868 + polB NOLOHH_03140 0.23 -2.1 543,868 + polB NOLOHH_03140 0.23 -0.1 543,868 + polB NOLOHH_03140 0.23 +2.1 543,868 + polB NOLOHH_03140 0.23 +0.5 543,868 + polB NOLOHH_03140 0.23 +0.6 543,868 + polB NOLOHH_03140 0.23 +0.1 543,868 + polB NOLOHH_03140 0.23 +0.7 543,868 + polB NOLOHH_03140 0.23 -0.5 543,868 + polB NOLOHH_03140 0.23 +1.0 543,869 - polB NOLOHH_03140 0.23 -1.2 543,869 - polB NOLOHH_03140 0.23 +0.3 543,870 + polB NOLOHH_03140 0.23 -1.8 543,870 + polB NOLOHH_03140 0.23 +0.1 543,922 + polB NOLOHH_03140 0.25 +1.1 543,923 - polB NOLOHH_03140 0.25 -2.3 543,923 - polB NOLOHH_03140 0.25 +0.6 543,923 - polB NOLOHH_03140 0.25 -0.3 544,113 + polB NOLOHH_03140 0.33 -3.1 544,152 - polB NOLOHH_03140 0.35 +0.6 544,152 - polB NOLOHH_03140 0.35 +0.3 544,232 + polB NOLOHH_03140 0.38 -0.1 544,233 - polB NOLOHH_03140 0.38 -2.6 544,233 - polB NOLOHH_03140 0.38 +1.1 544,236 - polB NOLOHH_03140 0.38 -1.2 544,252 - polB NOLOHH_03140 0.39 -1.3
Or see this region's nucleotide sequence