Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt araC and araB are separated by 338 nucleotides araB and araB are separated by 10 nucleotides
NOLOHH_03120: araC - arabinose operon transcriptional regulator AraC, at 537,965 to 538,843
araC
NOLOHH_03125: araB - ribulokinase, at 539,182 to 540,882
araB
NOLOHH_03130: araB - ribulokinase, at 540,893 to 542,395
araB
Position (kb) 539
540
541 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 538.188 kb on - strand, within araC at 538.290 kb on + strand, within araC at 538.290 kb on + strand, within araC at 538.290 kb on + strand, within araC at 538.291 kb on - strand, within araC at 538.365 kb on - strand, within araC at 538.505 kb on + strand, within araC at 538.505 kb on + strand, within araC at 538.519 kb on + strand, within araC at 538.520 kb on - strand, within araC at 538.520 kb on - strand, within araC at 538.554 kb on + strand, within araC at 538.600 kb on - strand, within araC at 538.634 kb on - strand, within araC at 538.709 kb on - strand, within araC at 538.709 kb on - strand, within araC at 538.709 kb on - strand, within araC at 538.709 kb on - strand, within araC at 538.709 kb on - strand, within araC at 538.710 kb on + strand, within araC at 538.710 kb on + strand, within araC at 538.711 kb on - strand, within araC at 538.711 kb on - strand, within araC at 538.711 kb on - strand, within araC at 538.711 kb on - strand, within araC at 538.753 kb on - strand, within araC at 538.843 kb on + strand at 538.853 kb on - strand at 538.958 kb on + strand at 538.961 kb on + strand at 538.961 kb on + strand at 538.961 kb on + strand at 538.961 kb on + strand at 538.962 kb on - strand at 538.962 kb on - strand at 539.010 kb on - strand at 539.023 kb on - strand at 539.023 kb on - strand at 539.023 kb on - strand at 539.025 kb on - strand at 539.114 kb on + strand at 539.141 kb on + strand at 539.274 kb on - strand at 539.274 kb on - strand at 539.274 kb on - strand at 539.350 kb on + strand at 539.350 kb on + strand at 539.350 kb on + strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.351 kb on - strand at 539.398 kb on - strand, within araB at 539.398 kb on - strand, within araB at 539.531 kb on + strand, within araB at 539.531 kb on + strand, within araB at 539.532 kb on - strand, within araB at 539.617 kb on + strand, within araB at 539.628 kb on + strand, within araB at 539.628 kb on + strand, within araB at 539.629 kb on - strand, within araB at 539.629 kb on - strand, within araB at 539.632 kb on + strand, within araB at 539.799 kb on + strand, within araB at 539.800 kb on - strand, within araB at 539.800 kb on - strand, within araB at 540.121 kb on - strand, within araB at 540.127 kb on - strand, within araB at 540.205 kb on + strand, within araB at 540.205 kb on + strand, within araB at 540.205 kb on + strand, within araB at 540.205 kb on + strand, within araB at 540.206 kb on - strand, within araB at 540.206 kb on - strand, within araB at 540.206 kb on - strand, within araB at 540.206 kb on - strand, within araB at 540.433 kb on - strand, within araB at 540.585 kb on + strand, within araB at 540.788 kb on - strand at 540.829 kb on + strand at 540.829 kb on + strand at 540.829 kb on + strand at 540.830 kb on - strand at 540.830 kb on - strand at 540.878 kb on + strand at 540.878 kb on + strand at 540.878 kb on + strand at 540.878 kb on + strand at 540.878 kb on + strand at 540.879 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.911 kb on + strand at 540.911 kb on + strand at 540.911 kb on + strand at 540.911 kb on + strand at 540.912 kb on - strand at 540.912 kb on - strand at 540.912 kb on - strand at 540.912 kb on - strand at 540.912 kb on - strand at 540.947 kb on + strand at 540.947 kb on + strand at 540.997 kb on + strand at 540.997 kb on + strand at 541.078 kb on + strand, within araB at 541.098 kb on - strand, within araB at 541.098 kb on - strand, within araB at 541.098 kb on - strand, within araB at 541.252 kb on + strand, within araB at 541.253 kb on - strand, within araB at 541.310 kb on - strand, within araB at 541.399 kb on + strand, within araB at 541.400 kb on - strand, within araB at 541.475 kb on - strand, within araB at 541.589 kb on + strand, within araB at 541.590 kb on - strand, within araB at 541.601 kb on + strand, within araB at 541.601 kb on + strand, within araB
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 538,188 - araC NOLOHH_03120 0.25 -2.5 538,290 + araC NOLOHH_03120 0.37 -3.5 538,290 + araC NOLOHH_03120 0.37 -0.1 538,290 + araC NOLOHH_03120 0.37 -3.1 538,291 - araC NOLOHH_03120 0.37 -0.6 538,365 - araC NOLOHH_03120 0.46 -2.6 538,505 + araC NOLOHH_03120 0.61 -2.5 538,505 + araC NOLOHH_03120 0.61 +0.7 538,519 + araC NOLOHH_03120 0.63 -1.2 538,520 - araC NOLOHH_03120 0.63 -0.6 538,520 - araC NOLOHH_03120 0.63 -0.4 538,554 + araC NOLOHH_03120 0.67 -3.1 538,600 - araC NOLOHH_03120 0.72 -1.1 538,634 - araC NOLOHH_03120 0.76 -1.6 538,709 - araC NOLOHH_03120 0.85 -0.1 538,709 - araC NOLOHH_03120 0.85 -1.7 538,709 - araC NOLOHH_03120 0.85 -2.2 538,709 - araC NOLOHH_03120 0.85 -0.5 538,709 - araC NOLOHH_03120 0.85 -3.0 538,710 + araC NOLOHH_03120 0.85 -1.7 538,710 + araC NOLOHH_03120 0.85 -2.4 538,711 - araC NOLOHH_03120 0.85 -1.3 538,711 - araC NOLOHH_03120 0.85 -1.1 538,711 - araC NOLOHH_03120 0.85 -2.0 538,711 - araC NOLOHH_03120 0.85 -3.0 538,753 - araC NOLOHH_03120 0.90 -3.6 538,843 + -1.7 538,853 - -2.7 538,958 + +0.0 538,961 + -1.4 538,961 + -3.6 538,961 + -0.1 538,961 + -0.8 538,962 - -0.4 538,962 - +0.4 539,010 - -0.0 539,023 - -1.1 539,023 - +0.4 539,023 - +1.3 539,025 - +0.2 539,114 + -3.7 539,141 + -2.2 539,274 - -1.6 539,274 - -2.1 539,274 - -2.2 539,350 + -3.9 539,350 + -1.9 539,350 + -1.1 539,351 - -3.0 539,351 - -3.3 539,351 - -4.2 539,398 - araB NOLOHH_03125 0.13 -0.7 539,398 - araB NOLOHH_03125 0.13 -2.9 539,531 + araB NOLOHH_03125 0.21 -1.7 539,531 + araB NOLOHH_03125 0.21 -2.0 539,532 - araB NOLOHH_03125 0.21 -3.2 539,617 + araB NOLOHH_03125 0.26 -4.3 539,628 + araB NOLOHH_03125 0.26 +0.2 539,628 + araB NOLOHH_03125 0.26 -3.8 539,629 - araB NOLOHH_03125 0.26 -1.9 539,629 - araB NOLOHH_03125 0.26 +0.5 539,632 + araB NOLOHH_03125 0.26 +0.6 539,799 + araB NOLOHH_03125 0.36 -0.5 539,800 - araB NOLOHH_03125 0.36 -2.6 539,800 - araB NOLOHH_03125 0.36 -3.0 540,121 - araB NOLOHH_03125 0.55 -1.7 540,127 - araB NOLOHH_03125 0.56 -3.0 540,205 + araB NOLOHH_03125 0.60 -3.2 540,205 + araB NOLOHH_03125 0.60 -3.6 540,205 + araB NOLOHH_03125 0.60 -1.3 540,205 + araB NOLOHH_03125 0.60 -2.0 540,206 - araB NOLOHH_03125 0.60 -0.5 540,206 - araB NOLOHH_03125 0.60 +1.3 540,206 - araB NOLOHH_03125 0.60 -3.4 540,206 - araB NOLOHH_03125 0.60 -1.0 540,433 - araB NOLOHH_03125 0.74 -2.4 540,585 + araB NOLOHH_03125 0.82 -2.0 540,788 - -2.1 540,829 + -1.6 540,829 + +0.4 540,829 + -2.3 540,830 - -3.3 540,830 - -3.4 540,878 + -2.0 540,878 + +0.1 540,878 + -0.6 540,878 + -0.8 540,878 + -1.3 540,879 - -3.7 540,881 - -2.4 540,881 - -2.7 540,911 + -4.1 540,911 + -2.6 540,911 + -4.1 540,911 + -0.9 540,912 - -2.1 540,912 - -1.6 540,912 - -3.0 540,912 - -0.3 540,912 - -1.8 540,947 + -3.9 540,947 + -3.8 540,997 + -2.1 540,997 + -0.3 541,078 + araB NOLOHH_03130 0.12 -3.2 541,098 - araB NOLOHH_03130 0.14 -0.9 541,098 - araB NOLOHH_03130 0.14 -2.5 541,098 - araB NOLOHH_03130 0.14 -4.3 541,252 + araB NOLOHH_03130 0.24 -2.2 541,253 - araB NOLOHH_03130 0.24 -3.8 541,310 - araB NOLOHH_03130 0.28 -3.8 541,399 + araB NOLOHH_03130 0.34 -2.3 541,400 - araB NOLOHH_03130 0.34 +0.7 541,475 - araB NOLOHH_03130 0.39 -0.1 541,589 + araB NOLOHH_03130 0.46 -3.2 541,590 - araB NOLOHH_03130 0.46 -3.0 541,601 + araB NOLOHH_03130 0.47 -2.3 541,601 + araB NOLOHH_03130 0.47 -3.1
Or see this region's nucleotide sequence