Strain Fitness in Escherichia coli ECOR27 around NOLOHH_00660

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_00655 and NOLOHH_00660 are separated by 288 nucleotidesNOLOHH_00660 and NOLOHH_00665 overlap by 4 nucleotidesNOLOHH_00665 and NOLOHH_00670 overlap by 4 nucleotides NOLOHH_00655: NOLOHH_00655 - DUF4145 domain-containing protein, at 26,384 to 27,136 _00655 NOLOHH_00660: NOLOHH_00660 - protein ren, at 27,425 to 27,718 _00660 NOLOHH_00665: NOLOHH_00665 - Replication protein P, at 27,715 to 28,416 _00665 NOLOHH_00670: NOLOHH_00670 - Replication protein, at 28,413 to 29,417 _00670 Position (kb) 27 28Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 26.425 kb on + strandat 26.432 kb on - strandat 26.432 kb on - strandat 26.432 kb on - strandat 26.498 kb on - strand, within NOLOHH_00655at 26.518 kb on + strand, within NOLOHH_00655at 26.591 kb on - strand, within NOLOHH_00655at 26.599 kb on - strand, within NOLOHH_00655at 26.631 kb on - strand, within NOLOHH_00655at 26.631 kb on - strand, within NOLOHH_00655at 26.634 kb on - strand, within NOLOHH_00655at 26.634 kb on - strand, within NOLOHH_00655at 26.634 kb on - strand, within NOLOHH_00655at 26.664 kb on - strand, within NOLOHH_00655at 26.664 kb on - strand, within NOLOHH_00655at 26.694 kb on - strand, within NOLOHH_00655at 26.748 kb on - strand, within NOLOHH_00655at 26.768 kb on + strand, within NOLOHH_00655at 26.769 kb on - strand, within NOLOHH_00655at 26.769 kb on - strand, within NOLOHH_00655at 26.769 kb on - strand, within NOLOHH_00655at 26.824 kb on - strand, within NOLOHH_00655at 26.824 kb on - strand, within NOLOHH_00655at 26.828 kb on - strand, within NOLOHH_00655at 26.828 kb on - strand, within NOLOHH_00655at 26.848 kb on - strand, within NOLOHH_00655at 26.958 kb on - strand, within NOLOHH_00655at 26.958 kb on - strand, within NOLOHH_00655at 26.987 kb on + strand, within NOLOHH_00655at 26.988 kb on - strand, within NOLOHH_00655at 27.067 kb on + strandat 27.068 kb on - strandat 27.068 kb on - strandat 27.118 kb on - strandat 27.118 kb on - strandat 27.122 kb on + strandat 27.122 kb on + strandat 27.127 kb on + strandat 27.180 kb on + strandat 27.181 kb on - strandat 27.200 kb on - strandat 27.202 kb on + strandat 27.203 kb on - strandat 27.203 kb on - strandat 27.203 kb on - strandat 27.203 kb on - strandat 27.203 kb on - strandat 27.232 kb on + strandat 27.233 kb on - strandat 27.233 kb on - strandat 27.254 kb on + strandat 27.254 kb on + strandat 27.255 kb on - strandat 27.265 kb on - strandat 27.278 kb on - strandat 27.278 kb on - strandat 27.379 kb on - strandat 27.427 kb on - strandat 27.429 kb on - strandat 27.429 kb on - strandat 27.549 kb on + strand, within NOLOHH_00660at 27.550 kb on - strand, within NOLOHH_00660at 27.550 kb on - strand, within NOLOHH_00660at 27.550 kb on - strand, within NOLOHH_00660at 27.630 kb on - strand, within NOLOHH_00660at 27.653 kb on + strand, within NOLOHH_00660at 27.653 kb on + strand, within NOLOHH_00660at 27.653 kb on + strand, within NOLOHH_00660at 27.654 kb on - strand, within NOLOHH_00660at 27.691 kb on - strandat 27.691 kb on - strandat 27.718 kb on + strandat 27.719 kb on - strandat 27.719 kb on - strandat 27.719 kb on - strandat 27.719 kb on - strandat 27.719 kb on - strandat 27.719 kb on - strandat 27.786 kb on + strand, within NOLOHH_00665at 27.796 kb on - strand, within NOLOHH_00665at 27.832 kb on + strand, within NOLOHH_00665at 27.835 kb on - strand, within NOLOHH_00665at 27.849 kb on + strand, within NOLOHH_00665at 27.850 kb on - strand, within NOLOHH_00665at 27.865 kb on - strand, within NOLOHH_00665at 27.865 kb on - strand, within NOLOHH_00665at 27.895 kb on + strand, within NOLOHH_00665at 27.895 kb on + strand, within NOLOHH_00665at 27.946 kb on - strand, within NOLOHH_00665at 28.026 kb on - strand, within NOLOHH_00665at 28.289 kb on - strand, within NOLOHH_00665at 28.289 kb on - strand, within NOLOHH_00665at 28.289 kb on - strand, within NOLOHH_00665at 28.310 kb on - strand, within NOLOHH_00665at 28.318 kb on + strand, within NOLOHH_00665

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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26,425 + -0.3
26,432 - -0.5
26,432 - +0.9
26,432 - -0.6
26,498 - NOLOHH_00655 0.15 -0.5
26,518 + NOLOHH_00655 0.18 +0.1
26,591 - NOLOHH_00655 0.27 +1.1
26,599 - NOLOHH_00655 0.29 -1.2
26,631 - NOLOHH_00655 0.33 +0.0
26,631 - NOLOHH_00655 0.33 +1.0
26,634 - NOLOHH_00655 0.33 +0.2
26,634 - NOLOHH_00655 0.33 -0.2
26,634 - NOLOHH_00655 0.33 +0.0
26,664 - NOLOHH_00655 0.37 -2.8
26,664 - NOLOHH_00655 0.37 -0.5
26,694 - NOLOHH_00655 0.41 +1.3
26,748 - NOLOHH_00655 0.48 -1.3
26,768 + NOLOHH_00655 0.51 +1.8
26,769 - NOLOHH_00655 0.51 -0.1
26,769 - NOLOHH_00655 0.51 -1.1
26,769 - NOLOHH_00655 0.51 +1.0
26,824 - NOLOHH_00655 0.58 -0.3
26,824 - NOLOHH_00655 0.58 +0.2
26,828 - NOLOHH_00655 0.59 +0.6
26,828 - NOLOHH_00655 0.59 +1.2
26,848 - NOLOHH_00655 0.62 -0.8
26,958 - NOLOHH_00655 0.76 +0.8
26,958 - NOLOHH_00655 0.76 -1.6
26,987 + NOLOHH_00655 0.80 -1.0
26,988 - NOLOHH_00655 0.80 +0.2
27,067 + -0.5
27,068 - +1.2
27,068 - -2.1
27,118 - -0.5
27,118 - +0.6
27,122 + +0.3
27,122 + -0.2
27,127 + -1.3
27,180 + +1.6
27,181 - -0.2
27,200 - +0.8
27,202 + +0.4
27,203 - -0.0
27,203 - +2.9
27,203 - -0.3
27,203 - -0.7
27,203 - +0.4
27,232 + +0.3
27,233 - +0.7
27,233 - +0.1
27,254 + -0.2
27,254 + -0.7
27,255 - +3.4
27,265 - +1.2
27,278 - -1.2
27,278 - -0.0
27,379 - +0.2
27,427 - -0.5
27,429 - +1.5
27,429 - -1.5
27,549 + NOLOHH_00660 0.42 -3.2
27,550 - NOLOHH_00660 0.43 -2.4
27,550 - NOLOHH_00660 0.43 -1.5
27,550 - NOLOHH_00660 0.43 -1.5
27,630 - NOLOHH_00660 0.70 +1.3
27,653 + NOLOHH_00660 0.78 -1.6
27,653 + NOLOHH_00660 0.78 -2.2
27,653 + NOLOHH_00660 0.78 -0.3
27,654 - NOLOHH_00660 0.78 -1.4
27,691 - +0.5
27,691 - +0.4
27,718 + -0.3
27,719 - +1.2
27,719 - -0.6
27,719 - +0.8
27,719 - -1.9
27,719 - +0.1
27,719 - -2.8
27,786 + NOLOHH_00665 0.10 -1.3
27,796 - NOLOHH_00665 0.12 +0.4
27,832 + NOLOHH_00665 0.17 -1.3
27,835 - NOLOHH_00665 0.17 -0.5
27,849 + NOLOHH_00665 0.19 -0.9
27,850 - NOLOHH_00665 0.19 +0.2
27,865 - NOLOHH_00665 0.21 +0.1
27,865 - NOLOHH_00665 0.21 +0.3
27,895 + NOLOHH_00665 0.26 +1.2
27,895 + NOLOHH_00665 0.26 -0.4
27,946 - NOLOHH_00665 0.33 -1.9
28,026 - NOLOHH_00665 0.44 +0.2
28,289 - NOLOHH_00665 0.82 -0.6
28,289 - NOLOHH_00665 0.82 +0.8
28,289 - NOLOHH_00665 0.82 -0.3
28,310 - NOLOHH_00665 0.85 -1.1
28,318 + NOLOHH_00665 0.86 -2.3

Or see this region's nucleotide sequence